Wall clock time and date at job start Mon Mar 8 2021 06:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39280 * 121.03576 * 2 1 4 4 C 1.46499 * 134.19224 * 359.95726 * 3 2 1 5 5 C 1.50692 * 126.60288 * 0.26164 * 4 3 2 6 6 O 1.42896 * 109.47298 * 285.03326 * 5 4 3 7 7 Si 1.86306 * 109.47225 * 165.03095 * 5 4 3 8 8 C 1.34184 * 106.79970 * 180.31064 * 4 3 2 9 9 N 1.36949 * 109.95240 * 359.97438 * 8 4 3 10 10 C 1.37156 * 110.11339 * 359.97438 * 9 8 4 11 11 N 1.32827 * 132.96965 * 180.02562 * 10 9 8 12 12 C 1.31302 * 121.89178 * 179.97438 * 11 10 9 13 13 C 1.39752 * 121.02759 * 179.75873 * 2 1 3 14 14 C 1.47659 * 120.45650 * 359.97181 * 13 2 1 15 15 O 1.21573 * 120.00700 * 310.23210 * 14 13 2 16 16 N 1.34780 * 120.00028 * 130.22836 * 14 13 2 17 17 C 1.46502 * 119.99776 * 4.63121 * 16 14 13 18 18 C 1.46497 * 120.00414 * 184.62397 * 16 14 13 19 19 H 1.09005 * 109.46892 * 0.02562 * 18 16 14 20 20 C 1.53002 * 109.46958 * 120.00233 * 18 16 14 21 21 C 1.52998 * 109.47308 * 180.02562 * 20 18 16 22 22 C 1.53000 * 109.47191 * 300.00003 * 21 20 18 23 23 H 1.08993 * 109.47145 * 300.00059 * 22 21 20 24 24 O 1.42895 * 109.47301 * 179.97438 * 22 21 20 25 25 C 1.53002 * 109.46996 * 59.99806 * 22 21 20 26 26 C 1.52998 * 109.47308 * 300.00122 * 25 22 21 27 27 H 1.08997 * 109.47655 * 265.83133 * 1 2 3 28 28 H 1.09000 * 109.46876 * 25.83149 * 1 2 3 29 29 H 1.08999 * 109.47260 * 145.82445 * 1 2 3 30 30 H 1.08999 * 109.47041 * 45.03573 * 5 4 3 31 31 H 0.96706 * 113.99935 * 299.99343 * 6 5 4 32 32 H 1.48503 * 110.00033 * 179.97438 * 7 5 4 33 33 H 1.48497 * 109.99894 * 301.31791 * 7 5 4 34 34 H 1.08001 * 125.02511 * 180.02562 * 8 4 3 35 35 H 0.96997 * 124.94510 * 179.97438 * 9 8 4 36 36 H 1.08004 * 119.31344 * 180.02562 * 12 11 10 37 37 H 1.08996 * 109.47450 * 84.92659 * 17 16 14 38 38 H 1.09002 * 109.47017 * 324.92156 * 17 16 14 39 39 H 1.09002 * 109.47194 * 204.92340 * 17 16 14 40 40 H 1.09001 * 109.47093 * 300.00275 * 20 18 16 41 41 H 1.09002 * 109.47209 * 60.00393 * 20 18 16 42 42 H 1.09000 * 109.47154 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.46935 * 59.99894 * 21 20 18 44 44 H 0.96706 * 113.99955 * 60.00745 * 24 22 21 45 45 H 1.09001 * 109.47093 * 180.02562 * 25 22 21 46 46 H 1.09002 * 109.47209 * 60.00061 * 25 22 21 47 47 H 1.09005 * 109.47423 * 300.00231 * 26 25 22 48 48 H 1.09001 * 109.47668 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1934 0.0000 4 6 1.8515 2.6100 -0.0008 5 6 0.4527 3.1704 0.0036 6 8 -0.1244 3.0211 -1.2951 7 14 0.5089 4.9772 0.4543 8 6 2.9948 3.3125 -0.0073 9 7 4.0669 2.4604 -0.0101 10 6 3.6348 1.1587 -0.0049 11 7 4.2720 -0.0067 -0.0045 12 6 3.6267 -1.1502 0.0017 13 6 2.2273 -1.1976 0.0050 14 6 1.5224 -2.4950 0.0111 15 8 0.6350 -2.7010 0.8162 16 7 1.8627 -3.4510 -0.8759 17 6 2.9979 -3.2424 -1.7782 18 6 1.0976 -4.6988 -0.9377 19 1 0.2980 -4.6717 -0.1973 20 6 0.4936 -4.8580 -2.3344 21 6 -0.3060 -6.1608 -2.3989 22 6 0.6204 -7.3428 -2.1061 23 1 1.4197 -7.3700 -2.8466 24 8 -0.1265 -8.5595 -2.1657 25 6 1.2244 -7.1836 -0.7094 26 6 2.0240 -5.8807 -0.6449 27 1 -0.3634 -0.0747 1.0249 28 1 -0.3633 0.9250 -0.4478 29 1 -0.3634 -0.8502 -0.5773 30 1 -0.1519 2.6325 0.7339 31 1 0.3626 3.4752 -1.9964 32 1 -0.8646 5.5419 0.4616 33 1 1.1360 5.1483 1.7895 34 1 3.0598 4.3906 -0.0091 35 1 4.9965 2.7372 -0.0152 36 1 4.1869 -2.0736 0.0022 37 1 3.9207 -3.5276 -1.2732 38 1 3.0486 -2.1910 -2.0612 39 1 2.8689 -3.8533 -2.6717 40 1 -0.1667 -4.0161 -2.5429 41 1 1.2929 -4.8849 -3.0750 42 1 -0.7359 -6.2744 -3.3941 43 1 -1.1053 -6.1335 -1.6583 44 1 -0.5389 -8.7262 -3.0244 45 1 1.8847 -8.0254 -0.5009 46 1 0.4250 -7.1563 0.0312 47 1 2.8233 -5.9079 -1.3855 48 1 2.4539 -5.7670 0.3502 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9156390_12890568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:50:53 Heat of formation + Delta-G solvation = -45.844877 kcal Electronic energy + Delta-G solvation = -31380.159963 eV Core-core repulsion = 27208.918016 eV Total energy + Delta-G solvation = -4171.241947 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.88505 -41.48563 -39.84507 -38.74088 -37.74572 -37.33843 -35.28289 -35.13569 -31.99591 -31.90975 -31.42171 -29.56401 -28.93839 -27.90311 -26.41507 -24.83240 -24.10859 -23.82997 -22.98547 -21.12873 -20.66672 -20.36258 -19.34660 -18.62402 -18.22723 -17.82201 -17.48150 -17.45660 -16.81893 -16.42094 -16.31738 -16.00217 -15.60866 -15.56663 -15.41730 -15.16057 -14.81511 -14.72618 -14.38594 -14.18565 -14.03303 -13.99152 -13.80871 -13.66632 -13.51142 -13.41988 -13.26326 -13.08680 -12.96179 -12.81638 -12.37783 -12.26344 -12.19731 -12.03717 -11.67302 -11.35255 -11.27133 -11.16519 -10.78796 -10.66231 -10.22716 -9.77273 -9.59777 -9.11668 -4.98782 -0.30501 -0.06778 1.35116 1.42914 1.50974 1.65091 1.75311 1.85499 2.06295 2.63043 3.22741 3.28414 3.44101 3.47304 3.57781 3.61897 3.62495 3.66933 3.76387 3.97216 4.08845 4.12202 4.16693 4.20136 4.21365 4.30055 4.32455 4.35375 4.40778 4.41412 4.48531 4.54670 4.60552 4.62456 4.74035 4.79506 4.88826 4.93455 4.97138 4.99441 5.05011 5.07039 5.09469 5.21408 5.23927 5.30419 5.33097 5.48913 5.73249 6.19512 6.24211 6.81946 6.87876 6.88931 6.98107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.048 3.952 3 C -0.160 4.160 4 C -0.209 4.209 5 C -0.048 4.048 6 O -0.557 6.557 7 Si 0.805 3.195 8 C 0.100 3.900 9 N -0.561 5.561 10 C 0.285 3.715 11 N -0.511 5.511 12 C 0.175 3.825 13 C -0.229 4.229 14 C 0.572 3.428 15 O -0.573 6.573 16 N -0.599 5.599 17 C 0.064 3.936 18 C 0.137 3.863 19 H 0.073 0.927 20 C -0.118 4.118 21 C -0.144 4.144 22 C 0.105 3.895 23 H 0.074 0.926 24 O -0.590 6.590 25 C -0.112 4.112 26 C -0.114 4.114 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.395 0.605 32 H -0.305 1.305 33 H -0.283 1.283 34 H 0.232 0.768 35 H 0.439 0.561 36 H 0.188 0.812 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.055 0.945 44 H 0.395 0.605 45 H 0.075 0.925 46 H 0.053 0.947 47 H 0.092 0.908 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.983 5.112 -7.316 10.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.039 3.961 3 C -0.167 4.167 4 C -0.216 4.216 5 C -0.157 4.157 6 O -0.365 6.365 7 Si 0.710 3.290 8 C -0.027 4.027 9 N -0.168 5.168 10 C 0.051 3.949 11 N -0.224 5.224 12 C 0.007 3.993 13 C -0.236 4.236 14 C 0.360 3.640 15 O -0.453 6.453 16 N -0.330 5.330 17 C -0.078 4.078 18 C 0.034 3.966 19 H 0.091 0.909 20 C -0.156 4.156 21 C -0.183 4.183 22 C 0.047 3.953 23 H 0.092 0.908 24 O -0.399 6.399 25 C -0.151 4.151 26 C -0.152 4.152 27 H 0.089 0.911 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.246 0.754 32 H -0.234 1.234 33 H -0.210 1.210 34 H 0.248 0.752 35 H 0.281 0.719 36 H 0.204 0.796 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.074 0.926 44 H 0.244 0.756 45 H 0.093 0.907 46 H 0.072 0.928 47 H 0.111 0.889 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.102 5.377 -5.425 9.777 hybrid contribution -1.076 -0.806 0.056 1.346 sum 5.026 4.571 -5.370 8.660 Atomic orbital electron populations 1.20886 0.89905 1.03844 1.02563 1.19868 0.96547 0.90199 0.89472 1.19727 0.93345 0.94354 1.09309 1.20780 0.96374 0.90155 1.14306 1.24697 0.89830 1.12447 0.88771 1.86460 1.54520 1.78599 1.16941 0.94079 0.80482 0.72488 0.81930 1.22412 0.83625 0.97370 0.99301 1.41612 1.10717 1.01586 1.62838 1.18752 0.89432 0.86902 0.99824 1.66537 1.40648 0.96401 1.18814 1.22917 0.89409 0.95234 0.91720 1.20434 0.95765 0.93051 1.14371 1.18179 0.81903 0.83673 0.80200 1.90774 1.33527 1.81171 1.39845 1.47855 1.32567 1.16362 1.36175 1.22222 0.87847 1.03256 0.94449 1.21173 0.94167 0.82635 0.98588 0.90918 1.21772 1.00312 0.97492 0.96022 1.22190 0.98666 0.94405 1.03010 1.21874 0.92931 0.83070 0.97474 0.90762 1.86492 1.71258 1.41447 1.40672 1.21434 0.99664 0.97666 0.96294 1.21749 0.98235 0.92071 1.03136 0.91082 0.88638 0.92230 0.88977 0.75442 1.23361 1.21022 0.75185 0.71947 0.79569 0.90137 0.91135 0.88320 0.92111 0.89042 0.89552 0.92614 0.75552 0.90650 0.92801 0.88910 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 8.58 71.24 0.61 -0.43 16 2 C 0.05 0.41 5.97 -19.25 -0.11 0.30 16 3 C -0.16 -0.94 6.16 -20.19 -0.12 -1.07 16 4 C -0.21 0.10 5.57 -18.64 -0.10 -0.01 16 5 C -0.05 0.06 1.88 71.23 0.13 0.19 16 6 O -0.56 0.50 11.62 -148.98 -1.73 -1.23 16 7 Si 0.81 -4.49 30.77 68.60 2.11 -2.38 16 8 C 0.10 -0.69 10.44 82.97 0.87 0.17 16 9 N -0.56 2.18 6.04 -192.24 -1.16 1.02 16 10 C 0.28 1.21 8.42 134.02 1.13 2.34 16 11 N -0.51 -2.85 10.37 -191.74 -1.99 -4.83 16 12 C 0.17 0.69 8.96 85.20 0.76 1.45 16 13 C -0.23 -1.71 4.87 -19.99 -0.10 -1.81 16 14 C 0.57 5.23 6.39 86.73 0.55 5.78 16 15 O -0.57 -9.91 15.29 -3.95 -0.06 -9.97 16 16 N -0.60 -1.25 2.76 -826.20 -2.28 -3.53 16 17 C 0.06 -0.33 8.10 127.77 1.04 0.71 16 18 C 0.14 0.26 2.51 44.99 0.11 0.38 16 19 H 0.07 0.64 6.91 -2.38 -0.02 0.62 16 20 C -0.12 0.22 5.19 30.59 0.16 0.38 16 21 C -0.14 0.25 5.54 30.59 0.17 0.42 16 22 C 0.10 -0.12 3.47 30.60 0.11 -0.01 16 23 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 24 O -0.59 -1.13 13.32 -148.98 -1.98 -3.11 16 25 C -0.11 -0.11 5.57 30.59 0.17 0.06 16 26 C -0.11 0.13 5.21 30.59 0.16 0.29 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 0.72 4.91 -2.39 -0.01 0.70 16 29 H 0.06 0.63 7.16 -2.39 -0.02 0.61 16 30 H 0.09 0.26 7.18 -2.39 -0.02 0.24 16 31 H 0.40 -3.88 8.70 -74.05 -0.64 -4.52 16 32 H -0.31 -1.00 7.11 99.48 0.71 -0.29 16 33 H -0.28 0.21 7.11 99.48 0.71 0.91 16 34 H 0.23 -3.94 6.35 -2.91 -0.02 -3.96 16 35 H 0.44 -4.18 8.96 -92.71 -0.83 -5.01 16 36 H 0.19 -0.34 6.35 -2.91 -0.02 -0.36 16 37 H 0.08 -0.68 7.10 -2.39 -0.02 -0.69 16 38 H 0.07 -0.26 6.29 -2.39 -0.02 -0.28 16 39 H 0.10 -0.89 6.44 -2.39 -0.02 -0.91 16 40 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.09 -0.56 6.66 -2.39 -0.02 -0.57 16 42 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.39 -2.50 9.08 -74.05 -0.67 -3.18 16 45 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 46 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 47 H 0.09 -0.51 7.67 -2.38 -0.02 -0.53 16 48 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 Total: 0.00 -28.99 372.12 -2.64 -31.63 By element: Atomic # 1 Polarization: -15.68 SS G_CDS: -1.07 Total: -16.75 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 5.53 Total: 9.15 kcal Atomic # 7 Polarization: -1.92 SS G_CDS: -5.43 Total: -7.35 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -3.78 Total: -14.31 kcal Atomic # 14 Polarization: -4.49 SS G_CDS: 2.11 Total: -2.38 kcal Total: -28.99 -2.64 -31.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9156390_12890568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.214 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds