Wall clock time and date at job start Mon Mar 8 2021 06:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34771 * 119.99680 * 2 1 4 4 O 1.21566 * 120.00016 * 175.46279 * 3 2 1 5 5 C 1.47724 * 120.00161 * 355.46928 * 3 2 1 6 6 C 1.39714 * 120.02244 * 221.34655 * 5 3 2 7 7 C 1.37660 * 119.97212 * 179.71500 * 6 5 3 8 8 C 1.39502 * 120.02635 * 0.56014 * 7 6 5 9 9 C 1.48277 * 119.97970 * 179.74169 * 8 7 6 10 10 C 1.39400 * 120.13018 * 179.69984 * 9 8 7 11 11 C 1.38006 * 119.87259 * 179.76387 * 10 9 8 12 12 C 1.38333 * 120.12318 * 0.51320 * 11 10 9 13 13 C 1.50700 * 119.86870 * 179.76196 * 12 11 10 14 14 O 1.42903 * 109.47224 * 244.97561 * 13 12 11 15 15 Si 1.86302 * 109.47418 * 4.97780 * 13 12 11 16 16 C 1.38337 * 120.25890 * 359.73966 * 12 11 10 17 17 C 1.37994 * 120.12626 * 0.02562 * 16 12 11 18 18 C 1.39511 * 120.04765 * 359.71852 * 8 7 6 19 19 C 1.37658 * 120.02281 * 359.97438 * 18 8 7 20 20 C 1.46498 * 120.00137 * 180.02562 * 2 1 3 21 21 H 1.08998 * 109.47250 * 180.02562 * 20 2 1 22 22 C 1.53002 * 109.46818 * 300.00270 * 20 2 1 23 23 C 1.53012 * 109.46875 * 180.02562 * 22 20 2 24 24 C 1.52999 * 109.46674 * 299.99716 * 23 22 20 25 25 H 1.08998 * 109.47417 * 300.00294 * 24 23 22 26 26 O 1.42902 * 109.47025 * 179.97438 * 24 23 22 27 27 C 1.53002 * 109.47461 * 60.00188 * 24 23 22 28 28 C 1.52999 * 109.47068 * 299.99813 * 27 24 23 29 29 H 1.08997 * 109.47399 * 275.16569 * 1 2 3 30 30 H 1.08999 * 109.47244 * 35.16984 * 1 2 3 31 31 H 1.09011 * 109.46939 * 155.16934 * 1 2 3 32 32 H 1.07994 * 120.00912 * 359.97438 * 6 5 3 33 33 H 1.07998 * 119.98928 * 180.29485 * 7 6 5 34 34 H 1.08004 * 120.06219 * 0.02562 * 10 9 8 35 35 H 1.07992 * 119.93912 * 180.22824 * 11 10 9 36 36 H 1.08998 * 109.46952 * 124.97692 * 13 12 11 37 37 H 0.96699 * 114.00267 * 180.02562 * 14 13 12 38 38 H 1.48498 * 110.00130 * 178.67915 * 15 13 12 39 39 H 1.48498 * 109.99774 * 300.00106 * 15 13 12 40 40 H 1.07998 * 119.93662 * 179.97438 * 16 12 11 41 41 H 1.08004 * 120.06809 * 179.97438 * 17 16 12 42 42 H 1.08006 * 119.98467 * 179.97438 * 18 8 7 43 43 H 1.08001 * 120.01095 * 179.97438 * 19 18 8 44 44 H 1.08993 * 109.47905 * 60.00334 * 22 20 2 45 45 H 1.09001 * 109.47280 * 299.99329 * 22 20 2 46 46 H 1.08999 * 109.46822 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.46835 * 59.99583 * 23 22 20 48 48 H 0.96699 * 114.00159 * 179.97438 * 26 24 23 49 49 H 1.08998 * 109.46895 * 59.99153 * 27 24 23 50 50 H 1.08996 * 109.47607 * 179.97438 * 27 24 23 51 51 H 1.09002 * 109.47155 * 300.00058 * 28 27 24 52 52 H 1.08992 * 109.47478 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1689 0.0833 5 6 1.4036 2.4445 -0.1011 6 6 1.8956 3.4722 -0.9096 7 6 1.2066 4.6599 -1.0077 8 6 0.0237 4.8419 -0.2909 9 6 -0.7146 6.1238 -0.3928 10 6 -1.9002 6.3067 0.3172 11 6 -2.5805 7.5037 0.2223 12 6 -2.0935 8.5170 -0.5837 13 6 -2.8438 9.8198 -0.6873 14 8 -3.3250 9.9876 -2.0224 15 14 -4.2841 9.8027 0.4943 16 6 -0.9202 8.3392 -1.2947 17 6 -0.2289 7.1484 -1.2038 18 6 -0.4654 3.8185 0.5214 19 6 0.2187 2.6277 0.6159 20 6 2.1976 -1.2687 -0.0006 21 1 3.2692 -1.0695 0.0000 22 6 1.8279 -2.0715 1.2483 23 6 2.5934 -3.3964 1.2481 24 6 2.2243 -4.1983 -0.0016 25 1 1.1528 -4.3978 -0.0019 26 8 2.9397 -5.4354 -0.0022 27 6 2.5939 -3.3955 -1.2505 28 6 1.8285 -2.0707 -1.2502 29 1 -0.3634 0.0925 1.0234 30 1 -0.3634 0.8400 -0.5919 31 1 -0.3633 -0.9328 -0.4316 32 1 2.8139 3.3332 -1.4608 33 1 1.5842 5.4527 -1.6363 34 1 -2.2834 5.5148 0.9436 35 1 -3.4971 7.6479 0.7747 36 1 -2.1768 10.6442 -0.4352 37 1 -3.8184 10.8073 -2.1626 38 1 -5.0134 11.0943 0.4248 39 1 -5.2010 8.6831 0.1612 40 1 -0.5449 9.1336 -1.9227 41 1 0.6868 7.0104 -1.7596 42 1 -1.3811 3.9607 1.0762 43 1 -0.1600 1.8357 1.2451 44 1 0.7563 -2.2708 1.2483 45 1 2.0912 -1.5004 2.1386 46 1 2.3304 -3.9681 2.1380 47 1 3.6650 -3.1967 1.2484 48 1 2.7540 -5.9968 -0.7673 49 1 3.6655 -3.1958 -1.2501 50 1 2.3314 -3.9669 -2.1407 51 1 0.7569 -2.2703 -1.2505 52 1 2.0921 -1.4986 -2.1396 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9156390_13158362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:50:57 Heat of formation + Delta-G solvation = -54.523663 kcal Electronic energy + Delta-G solvation = -32203.811799 eV Core-core repulsion = 27906.593053 eV Total energy + Delta-G solvation = -4297.218746 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.182 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.79966 -40.85621 -39.92107 -39.07727 -37.66965 -37.34328 -35.41016 -34.01735 -32.61165 -31.92167 -31.67399 -31.10831 -29.59008 -28.00386 -26.85807 -24.71460 -24.48470 -23.86143 -23.12012 -22.58045 -21.81709 -20.95630 -20.53870 -18.64605 -18.55782 -18.24337 -18.18275 -17.73985 -16.91118 -16.88569 -16.51355 -16.37128 -15.67679 -15.60823 -15.52796 -15.45920 -15.00200 -14.92930 -14.83597 -14.68454 -14.39273 -14.22119 -14.11761 -13.99219 -13.92119 -13.72721 -13.46679 -13.39869 -13.28818 -13.10051 -12.87081 -12.77262 -12.51016 -12.38043 -12.21499 -12.05438 -11.90624 -11.68698 -11.59077 -11.28436 -11.07617 -10.78775 -10.69959 -10.45320 -10.03486 -9.94634 -9.75622 -9.05205 -4.92725 -0.62829 0.34830 0.41316 0.54889 1.29559 1.58368 1.60054 1.84278 1.94009 2.50814 2.95743 3.25371 3.32570 3.39260 3.53367 3.62550 3.64921 3.66562 3.84842 3.87857 3.96395 4.00493 4.06188 4.08301 4.14442 4.19630 4.26566 4.28166 4.29375 4.34882 4.36867 4.40582 4.44316 4.59279 4.60883 4.65983 4.70495 4.79351 4.87393 4.90216 4.92125 4.96230 4.99224 5.05031 5.08225 5.08946 5.13114 5.21339 5.22598 5.27527 5.31569 5.40872 5.48904 5.51403 5.66441 5.80373 5.93448 6.21919 6.56738 6.87109 6.97716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.599 5.599 3 C 0.554 3.446 4 O -0.584 6.584 5 C -0.144 4.144 6 C -0.077 4.077 7 C -0.121 4.121 8 C -0.025 4.025 9 C -0.059 4.059 10 C -0.101 4.101 11 C -0.122 4.122 12 C -0.082 4.082 13 C -0.089 4.089 14 O -0.559 6.559 15 Si 0.765 3.235 16 C -0.104 4.104 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.080 4.080 20 C 0.135 3.865 21 H 0.070 0.930 22 C -0.113 4.113 23 C -0.113 4.113 24 C 0.105 3.895 25 H 0.075 0.925 26 O -0.590 6.590 27 C -0.145 4.145 28 C -0.117 4.117 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.143 0.857 34 H 0.157 0.843 35 H 0.144 0.856 36 H 0.093 0.907 37 H 0.395 0.605 38 H -0.289 1.289 39 H -0.295 1.295 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.053 0.947 48 H 0.395 0.605 49 H 0.055 0.945 50 H 0.086 0.914 51 H 0.092 0.908 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 0.317 1.412 7.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.330 5.330 3 C 0.344 3.656 4 O -0.465 6.465 5 C -0.147 4.147 6 C -0.096 4.096 7 C -0.138 4.138 8 C -0.026 4.026 9 C -0.059 4.059 10 C -0.119 4.119 11 C -0.139 4.139 12 C -0.082 4.082 13 C -0.198 4.198 14 O -0.369 6.369 15 Si 0.671 3.329 16 C -0.122 4.122 17 C -0.132 4.132 18 C -0.132 4.132 19 C -0.099 4.099 20 C 0.032 3.968 21 H 0.088 0.912 22 C -0.151 4.151 23 C -0.151 4.151 24 C 0.047 3.953 25 H 0.093 0.907 26 O -0.399 6.399 27 C -0.184 4.184 28 C -0.156 4.156 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.141 0.859 33 H 0.161 0.839 34 H 0.174 0.826 35 H 0.161 0.839 36 H 0.111 0.889 37 H 0.245 0.755 38 H -0.216 1.216 39 H -0.222 1.222 40 H 0.148 0.852 41 H 0.156 0.844 42 H 0.178 0.822 43 H 0.177 0.823 44 H 0.111 0.889 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.072 0.928 48 H 0.244 0.756 49 H 0.073 0.927 50 H 0.105 0.895 51 H 0.110 0.890 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.864 0.029 2.022 7.156 hybrid contribution 0.173 0.642 -1.905 2.018 sum -6.691 0.671 0.116 6.726 Atomic orbital electron populations 1.22416 0.77171 1.05068 1.03534 1.47873 1.08493 1.04711 1.71907 1.18772 0.86564 0.84819 0.75421 1.90776 1.15879 1.87887 1.51990 1.19890 0.97733 0.94118 1.02949 1.21131 0.98949 0.92345 0.97199 1.21319 0.94916 0.97433 1.00178 1.19102 0.94121 0.93134 0.96203 1.18931 0.95537 0.92992 0.98445 1.21476 0.93769 0.97786 0.98843 1.21158 1.00379 0.93082 0.99303 1.19612 0.95524 0.95105 0.97973 1.25070 1.06308 0.97664 0.90744 1.86546 1.75252 1.47201 1.27893 0.94110 0.75831 0.76691 0.86309 1.21088 0.94752 0.97828 0.98548 1.21500 1.00451 0.92822 0.98379 1.21487 1.01203 0.91867 0.98596 1.21680 0.92126 0.98600 0.97445 1.21171 0.96895 0.82478 0.96221 0.91160 1.21740 1.01926 0.94560 0.96873 1.21441 1.00430 0.95233 0.98008 1.21875 0.95663 0.83475 0.94327 0.90715 1.86492 1.70889 1.31594 1.50894 1.22197 1.00579 0.96380 0.99197 1.21768 1.01997 0.95217 0.96588 0.89989 0.89951 0.88726 0.85936 0.83914 0.82598 0.83894 0.88869 0.75508 1.21615 1.22241 0.85240 0.84353 0.82168 0.82302 0.88867 0.91675 0.90591 0.92846 0.75551 0.92665 0.89531 0.88968 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.43 7.95 127.77 1.02 0.58 16 2 N -0.60 -0.56 2.76 -826.12 -2.28 -2.84 16 3 C 0.55 4.33 7.32 86.75 0.63 4.97 16 4 O -0.58 -10.04 16.28 -3.92 -0.06 -10.10 16 5 C -0.14 -0.55 5.16 -20.06 -0.10 -0.65 16 6 C -0.08 -0.35 9.63 22.49 0.22 -0.13 16 7 C -0.12 -0.19 9.41 22.44 0.21 0.02 16 8 C -0.03 -0.01 5.88 -19.99 -0.12 -0.12 16 9 C -0.06 -0.03 5.88 -20.05 -0.12 -0.15 16 10 C -0.10 0.18 9.43 22.49 0.21 0.39 16 11 C -0.12 0.09 8.65 22.24 0.19 0.28 16 12 C -0.08 -0.12 5.39 -19.82 -0.11 -0.22 16 13 C -0.09 0.10 2.79 71.24 0.20 0.30 16 14 O -0.56 -1.05 12.81 -148.98 -1.91 -2.96 16 15 Si 0.77 -2.27 29.84 68.60 2.05 -0.23 16 16 C -0.10 -0.21 9.67 22.24 0.21 0.01 16 17 C -0.11 -0.13 9.43 22.49 0.21 0.08 16 18 C -0.11 0.36 9.41 22.44 0.21 0.57 16 19 C -0.08 0.19 7.60 22.49 0.17 0.36 16 20 C 0.14 0.19 2.51 44.99 0.11 0.30 16 21 H 0.07 0.61 6.91 -2.39 -0.02 0.60 16 22 C -0.11 0.20 5.20 30.60 0.16 0.35 16 23 C -0.11 -0.06 5.57 30.60 0.17 0.11 16 24 C 0.11 -0.16 3.47 30.59 0.11 -0.06 16 25 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 26 O -0.59 -0.91 13.32 -148.98 -1.98 -2.90 16 27 C -0.15 0.31 5.54 30.59 0.17 0.48 16 28 C -0.12 0.28 5.19 30.60 0.16 0.44 16 29 H 0.08 -0.89 6.85 -2.39 -0.02 -0.90 16 30 H 0.08 -0.60 6.00 -2.39 -0.01 -0.61 16 31 H 0.09 -1.00 6.44 -2.38 -0.02 -1.02 16 32 H 0.12 0.69 8.06 -2.91 -0.02 0.67 16 33 H 0.14 -0.22 6.19 -2.91 -0.02 -0.24 16 34 H 0.16 -1.19 6.19 -2.91 -0.02 -1.21 16 35 H 0.14 -0.62 4.85 -2.91 -0.01 -0.64 16 36 H 0.09 -0.44 7.96 -2.39 -0.02 -0.46 16 37 H 0.39 -2.39 8.74 -74.06 -0.65 -3.03 16 38 H -0.29 -0.44 7.11 99.48 0.71 0.27 16 39 H -0.29 -1.07 7.04 99.48 0.70 -0.37 16 40 H 0.13 0.07 8.06 -2.91 -0.02 0.05 16 41 H 0.14 -0.26 6.19 -2.91 -0.02 -0.28 16 42 H 0.16 -1.44 6.19 -2.91 -0.02 -1.46 16 43 H 0.16 -1.20 5.52 -2.91 -0.02 -1.22 16 44 H 0.09 -0.59 7.67 -2.39 -0.02 -0.60 16 45 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 47 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 48 H 0.39 -2.64 9.08 -74.06 -0.67 -3.31 16 49 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 50 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 51 H 0.09 -0.62 6.67 -2.39 -0.02 -0.64 16 52 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 Total: 0.00 -25.44 404.78 -0.58 -26.02 By element: Atomic # 1 Polarization: -14.61 SS G_CDS: -0.31 Total: -14.93 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 3.92 Total: 7.92 kcal Atomic # 7 Polarization: -0.56 SS G_CDS: -2.28 Total: -2.84 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -3.96 Total: -15.95 kcal Atomic # 14 Polarization: -2.27 SS G_CDS: 2.05 Total: -0.23 kcal Total: -25.44 -0.58 -26.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9156390_13158362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.506 kcal (2) G-P(sol) polarization free energy of solvation -25.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds