Wall clock time and date at job start Mon Mar 8 2021 06:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38970 * 119.95216 * 2 1 4 4 O 1.35709 * 119.91693 * 359.97438 * 3 2 1 5 5 C 1.39032 * 120.17406 * 179.76542 * 3 2 1 6 6 C 1.50691 * 119.95600 * 180.23177 * 5 3 2 7 7 O 1.42902 * 109.47504 * 285.27701 * 6 5 3 8 8 Si 1.86302 * 109.46974 * 165.27560 * 6 5 3 9 9 C 1.37675 * 120.08393 * 0.51166 * 5 3 2 10 10 C 1.39751 * 119.91222 * 359.74581 * 9 5 3 11 11 C 1.47612 * 120.08913 * 180.02562 * 10 9 5 12 12 O 1.21586 * 119.99471 * 320.62181 * 11 10 9 13 13 N 1.34771 * 120.00360 * 140.61787 * 11 10 9 14 14 C 1.46503 * 119.99747 * 4.87293 * 13 11 10 15 15 C 1.46501 * 120.00189 * 184.87795 * 13 11 10 16 16 H 1.09000 * 109.46916 * 0.02562 * 15 13 11 17 17 C 1.52999 * 109.47107 * 119.99638 * 15 13 11 18 18 C 1.53003 * 109.47059 * 179.97438 * 17 15 13 19 19 C 1.53001 * 109.47308 * 300.00445 * 18 17 15 20 20 H 1.09003 * 109.46878 * 299.99495 * 19 18 17 21 21 O 1.42894 * 109.47119 * 179.97438 * 19 18 17 22 22 C 1.53001 * 109.47062 * 59.99815 * 19 18 17 23 23 C 1.52998 * 109.47175 * 299.99894 * 22 19 18 24 24 C 1.37719 * 119.95353 * 180.27424 * 2 1 3 25 25 H 1.09000 * 109.46693 * 269.72433 * 1 2 3 26 26 H 1.09001 * 109.47185 * 149.72501 * 1 2 3 27 27 H 1.09002 * 109.47031 * 29.72462 * 1 2 3 28 28 H 0.96704 * 113.99678 * 89.99920 * 4 3 2 29 29 H 1.08999 * 109.47110 * 45.28038 * 6 5 3 30 30 H 0.96696 * 114.00172 * 300.00233 * 7 6 5 31 31 H 1.48506 * 109.99837 * 179.97438 * 8 6 5 32 32 H 1.48492 * 110.00052 * 301.32175 * 8 6 5 33 33 H 1.07995 * 120.04473 * 179.71875 * 9 5 3 34 34 H 1.09006 * 109.46629 * 85.68102 * 14 13 11 35 35 H 1.09000 * 109.47066 * 205.67540 * 14 13 11 36 36 H 1.08997 * 109.47416 * 325.68198 * 14 13 11 37 37 H 1.08998 * 109.47252 * 300.00120 * 17 15 13 38 38 H 1.09000 * 109.46863 * 60.00420 * 17 15 13 39 39 H 1.08996 * 109.47133 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.46824 * 60.00538 * 18 17 15 41 41 H 0.96704 * 114.00165 * 60.00203 * 21 19 18 42 42 H 1.08998 * 109.46890 * 180.02562 * 22 19 18 43 43 H 1.08993 * 109.47054 * 60.00345 * 22 19 18 44 44 H 1.09003 * 109.47043 * 300.00490 * 23 22 19 45 45 H 1.08999 * 109.47553 * 180.02562 * 23 22 19 46 46 H 1.07999 * 120.05069 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2009 1.2041 0.0000 4 8 1.5197 2.3778 -0.0005 5 6 3.5912 1.2095 0.0049 6 6 4.3386 2.5180 0.0102 7 8 4.2712 3.1104 -1.2885 8 14 6.1201 2.2137 0.4623 9 6 4.2860 0.0209 -0.0008 10 6 3.5918 -1.1920 -0.0062 11 6 4.3328 -2.4687 -0.0118 12 8 5.3420 -2.5829 -0.6804 13 7 3.8908 -3.5077 0.7241 14 6 2.6193 -3.4065 1.4447 15 6 4.6819 -4.7382 0.8035 16 1 5.5879 -4.6267 0.2078 17 6 5.0607 -5.0078 2.2611 18 6 5.8863 -6.2932 2.3442 19 6 5.0619 -7.4645 1.8063 20 1 4.1562 -7.5754 2.4026 21 8 5.8333 -8.6649 1.8833 22 6 4.6832 -7.1949 0.3487 23 6 3.8575 -5.9095 0.2657 24 6 2.1947 -1.1932 -0.0057 25 1 -0.3633 -0.0049 1.0277 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5096 28 1 1.3219 2.7181 0.8828 29 1 3.8883 3.1907 0.7401 30 1 4.6544 2.5657 -1.9896 31 1 6.8682 3.4966 0.4704 32 1 6.2023 1.5688 1.7973 33 1 5.3659 0.0259 -0.0016 34 1 1.8012 -3.6793 0.7780 35 1 2.6317 -4.0820 2.3000 36 1 2.4790 -2.3829 1.7921 37 1 5.6476 -4.1731 2.6444 38 1 4.1549 -5.1190 2.8572 39 1 6.1558 -6.4855 3.3826 40 1 6.7921 -6.1823 1.7480 41 1 6.1092 -8.8983 2.7803 42 1 4.0955 -8.0291 -0.0343 43 1 5.5889 -7.0841 -0.2475 44 1 2.9518 -6.0203 0.8619 45 1 3.5873 -5.7176 -0.7727 46 1 1.6548 -2.1286 -0.0106 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9156390_13287732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:51:23 Heat of formation + Delta-G solvation = -130.969503 kcal Electronic energy + Delta-G solvation = -28302.422799 eV Core-core repulsion = 24351.649102 eV Total energy + Delta-G solvation = -3950.773698 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.97520 -40.87956 -39.60026 -37.86599 -37.56451 -37.32548 -35.27882 -34.00847 -32.01285 -31.88671 -29.65637 -28.21286 -27.80576 -26.84711 -24.88367 -23.84060 -22.84911 -22.09019 -20.88597 -20.40353 -19.58250 -18.47255 -18.21925 -18.17398 -17.50669 -17.16279 -16.75845 -16.41625 -16.07180 -15.76566 -15.58609 -15.53873 -15.01535 -14.82117 -14.72118 -14.54069 -14.24640 -14.20442 -14.05715 -13.82435 -13.41264 -13.34753 -13.25781 -13.13455 -12.90064 -12.77894 -12.68811 -12.37873 -12.31320 -12.23079 -12.18595 -11.67317 -11.56988 -11.26380 -11.02720 -10.76698 -10.46945 -9.92956 -9.81321 -9.60425 -5.06172 -0.31526 0.06829 1.19909 1.49405 1.52951 1.80819 1.82726 2.42988 3.11266 3.26649 3.33028 3.37706 3.58763 3.61416 3.67436 3.73496 3.98169 3.99864 4.09859 4.13219 4.18362 4.22978 4.30771 4.33705 4.36925 4.41902 4.42533 4.58236 4.61749 4.63250 4.76040 4.80432 4.81771 4.90289 4.96044 5.00557 5.04198 5.06754 5.09311 5.10774 5.19981 5.24817 5.32781 5.34307 5.47926 5.60874 6.21916 6.67392 6.72669 6.88502 6.97884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.118 4.118 3 C 0.150 3.850 4 O -0.496 6.496 5 C -0.156 4.156 6 C -0.053 4.053 7 O -0.549 6.549 8 Si 0.740 3.260 9 C -0.061 4.061 10 C -0.144 4.144 11 C 0.556 3.444 12 O -0.574 6.574 13 N -0.600 5.600 14 C 0.057 3.943 15 C 0.136 3.864 16 H 0.075 0.925 17 C -0.118 4.118 18 C -0.145 4.145 19 C 0.104 3.896 20 H 0.074 0.926 21 O -0.590 6.590 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.064 4.064 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.409 0.591 29 H 0.114 0.886 30 H 0.391 0.609 31 H -0.288 1.288 32 H -0.283 1.283 33 H 0.138 0.862 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.394 0.606 42 H 0.074 0.926 43 H 0.054 0.946 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.757 -2.880 5.596 8.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.119 4.119 3 C 0.104 3.896 4 O -0.309 6.309 5 C -0.157 4.157 6 C -0.164 4.164 7 O -0.357 6.357 8 Si 0.645 3.355 9 C -0.079 4.079 10 C -0.147 4.147 11 C 0.346 3.654 12 O -0.455 6.455 13 N -0.330 5.330 14 C -0.085 4.085 15 C 0.033 3.967 16 H 0.093 0.907 17 C -0.156 4.156 18 C -0.183 4.183 19 C 0.046 3.954 20 H 0.091 0.909 21 O -0.399 6.399 22 C -0.151 4.151 23 C -0.151 4.151 24 C -0.082 4.082 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.269 0.731 29 H 0.131 0.869 30 H 0.241 0.759 31 H -0.215 1.215 32 H -0.210 1.210 33 H 0.155 0.845 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.244 0.756 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.110 0.890 45 H 0.084 0.916 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.961 -2.351 4.925 7.375 hybrid contribution -0.019 0.402 1.089 1.161 sum -4.979 -1.949 6.014 8.047 Atomic orbital electron populations 1.20759 0.88302 1.03912 1.03796 1.20441 0.98275 0.91602 1.01588 1.18472 0.88777 0.85853 0.96472 1.84756 1.75511 1.35746 1.34895 1.20601 0.94259 0.95581 1.05243 1.24854 1.09246 0.92925 0.89383 1.86505 1.84882 1.47581 1.16690 0.93790 0.76261 0.81196 0.84217 1.20894 0.99657 0.90540 0.96854 1.19730 0.94552 0.92491 1.07927 1.18552 0.83813 0.84128 0.78903 1.90793 1.27613 1.83764 1.43285 1.47854 1.23396 1.13685 1.48105 1.22472 0.83732 1.04460 0.97788 1.21181 0.94761 0.83059 0.97690 0.90701 1.21774 1.01257 0.97465 0.95136 1.22191 0.98989 0.94678 1.02467 1.21884 0.93409 0.83461 0.96660 0.90859 1.86494 1.74460 1.43250 1.35681 1.21435 1.00263 0.97629 0.95774 1.21738 0.98987 0.92313 1.02093 1.21658 0.91727 0.99301 0.95514 0.89242 0.89961 0.91387 0.73110 0.86900 0.75930 1.21525 1.20983 0.84476 0.90052 0.88646 0.89835 0.91940 0.89085 0.89666 0.92510 0.75576 0.90758 0.92704 0.89021 0.91590 0.81803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.71 9.79 71.24 0.70 1.40 16 2 C -0.12 0.28 5.89 -19.81 -0.12 0.16 16 3 C 0.15 0.09 6.66 22.64 0.15 0.24 16 4 O -0.50 0.08 11.84 -90.30 -1.07 -0.99 16 5 C -0.16 -0.23 5.27 -19.81 -0.10 -0.33 16 6 C -0.05 -0.08 2.37 71.23 0.17 0.09 16 7 O -0.55 -2.02 12.88 -148.98 -1.92 -3.94 16 8 Si 0.74 1.05 29.91 68.60 2.05 3.10 16 9 C -0.06 -0.15 8.23 22.50 0.19 0.04 16 10 C -0.14 -0.27 5.23 -20.08 -0.11 -0.38 16 11 C 0.56 2.92 7.34 86.72 0.64 3.56 16 12 O -0.57 -7.78 16.25 -3.99 -0.06 -7.84 16 13 N -0.60 0.65 2.76 -826.26 -2.28 -1.63 16 14 C 0.06 -0.51 7.91 127.77 1.01 0.50 16 15 C 0.14 -0.07 2.52 44.99 0.11 0.05 16 16 H 0.07 0.47 6.91 -2.39 -0.02 0.45 16 17 C -0.12 0.48 5.19 30.59 0.16 0.63 16 18 C -0.14 0.50 5.54 30.60 0.17 0.66 16 19 C 0.10 -0.27 3.47 30.59 0.11 -0.16 16 20 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 21 O -0.59 -0.41 13.32 -148.98 -1.98 -2.40 16 22 C -0.11 0.07 5.57 30.59 0.17 0.24 16 23 C -0.11 0.36 5.20 30.59 0.16 0.52 16 24 C -0.06 0.19 7.19 22.50 0.16 0.35 16 25 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 26 H 0.08 -0.68 8.08 -2.39 -0.02 -0.70 16 27 H 0.07 -0.25 7.51 -2.39 -0.02 -0.27 16 28 H 0.41 -3.65 9.06 -74.05 -0.67 -4.32 16 29 H 0.11 0.07 7.83 -2.39 -0.02 0.05 16 30 H 0.39 -1.20 8.70 -74.06 -0.64 -1.85 16 31 H -0.29 -2.25 7.11 99.48 0.71 -1.54 16 32 H -0.28 -1.66 7.11 99.48 0.71 -0.96 16 33 H 0.14 0.25 5.11 -2.91 -0.01 0.24 16 34 H 0.08 -0.99 6.90 -2.38 -0.02 -1.01 16 35 H 0.10 -1.16 6.43 -2.39 -0.02 -1.18 16 36 H 0.08 -0.77 5.81 -2.39 -0.01 -0.78 16 37 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.09 -0.75 6.66 -2.39 -0.02 -0.76 16 39 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.39 -2.93 9.08 -74.05 -0.67 -3.60 16 42 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.09 -0.68 7.67 -2.39 -0.02 -0.70 16 45 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 46 H 0.16 -1.34 5.31 -2.91 -0.02 -1.36 16 Total: 0.00 -23.74 360.77 -2.62 -26.36 By element: Atomic # 1 Polarization: -19.32 SS G_CDS: -0.91 Total: -20.23 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 3.56 Total: 7.57 kcal Atomic # 7 Polarization: 0.65 SS G_CDS: -2.28 Total: -1.63 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -5.04 Total: -15.17 kcal Atomic # 14 Polarization: 1.05 SS G_CDS: 2.05 Total: 3.10 kcal Total: -23.74 -2.62 -26.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9156390_13287732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.610 kcal (2) G-P(sol) polarization free energy of solvation -23.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds