Wall clock time and date at job start Mon Mar 8 2021 06:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 119.99829 * 2 1 4 4 O 1.21286 * 119.99960 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00265 * 0.02562 * 3 2 1 6 6 C 1.50696 * 109.47484 * 179.97438 * 5 3 2 7 7 C 1.34854 * 125.89121 * 275.32341 * 6 5 3 8 8 C 1.40890 * 107.41722 * 180.15763 * 7 6 5 9 9 C 1.34856 * 107.41764 * 359.55980 * 8 7 6 10 10 C 1.50694 * 125.88896 * 180.23979 * 9 8 7 11 11 O 1.42894 * 109.47447 * 245.02958 * 10 9 8 12 12 Si 1.86295 * 109.47514 * 5.03617 * 10 9 8 13 13 N 1.36337 * 108.21648 * 0.27154 * 9 8 7 14 14 C 1.46505 * 119.99998 * 180.02562 * 2 1 3 15 15 H 1.08999 * 109.46731 * 180.02562 * 14 2 1 16 16 C 1.52995 * 109.46675 * 299.99577 * 14 2 1 17 17 C 1.53004 * 109.46946 * 180.02562 * 16 14 2 18 18 C 1.53008 * 109.47045 * 300.00102 * 17 16 14 19 19 H 1.08999 * 109.46775 * 300.00324 * 18 17 16 20 20 O 1.42890 * 109.47091 * 179.97438 * 18 17 16 21 21 C 1.52995 * 109.46871 * 59.99858 * 18 17 16 22 22 C 1.52997 * 109.47221 * 59.99826 * 14 2 1 23 23 H 1.09001 * 109.47093 * 89.99706 * 1 2 3 24 24 H 1.09002 * 109.46989 * 209.99208 * 1 2 3 25 25 H 1.08988 * 109.47360 * 329.99756 * 1 2 3 26 26 H 1.09001 * 109.47211 * 59.98915 * 5 3 2 27 27 H 1.09004 * 109.46963 * 299.99521 * 5 3 2 28 28 H 1.07999 * 126.28920 * 0.02562 * 7 6 5 29 29 H 1.08002 * 126.29400 * 179.83402 * 8 7 6 30 30 H 1.09010 * 109.46677 * 125.03364 * 10 9 8 31 31 H 0.96701 * 114.00262 * 60.00209 * 11 10 9 32 32 H 1.48499 * 110.00169 * 58.67453 * 12 10 9 33 33 H 1.48505 * 110.00375 * 179.97438 * 12 10 9 34 34 H 0.97000 * 125.63784 * 180.02562 * 13 9 8 35 35 H 1.09004 * 109.47591 * 300.00194 * 16 14 2 36 36 H 1.08999 * 109.47053 * 60.00794 * 16 14 2 37 37 H 1.08998 * 109.47337 * 180.02562 * 17 16 14 38 38 H 1.08993 * 109.47195 * 59.99973 * 17 16 14 39 39 H 0.96708 * 114.00388 * 60.00488 * 20 18 17 40 40 H 1.09004 * 109.47130 * 180.02562 * 21 18 17 41 41 H 1.08997 * 109.47680 * 60.00248 * 21 18 17 42 42 H 1.08993 * 109.47161 * 299.99910 * 22 14 2 43 43 H 1.08999 * 109.47312 * 60.00055 * 22 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3646 3.6177 0.0011 7 6 2.9554 4.1523 1.0891 8 6 3.7894 5.1975 0.6454 9 6 3.6840 5.2555 -0.6978 10 6 4.4063 6.2230 -1.5996 11 8 3.4574 7.0849 -2.2309 12 14 5.5962 7.2419 -0.5914 13 7 2.8109 4.2884 -1.0990 14 6 2.1975 -1.2688 -0.0006 15 1 3.2692 -1.0695 0.0000 16 6 1.8279 -2.0715 1.2484 17 6 2.5934 -3.3963 1.2482 18 6 2.2243 -4.1984 -0.0015 19 1 1.1527 -4.3978 -0.0017 20 8 2.9396 -5.4353 -0.0020 21 6 2.5939 -3.3955 -1.2503 22 6 1.8279 -2.0705 -1.2501 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8901 0.5137 25 1 -0.3633 0.8898 0.5138 26 1 0.7589 2.5298 0.8907 27 1 0.7584 2.5302 -0.8892 28 1 2.8134 3.8384 2.1127 29 1 4.4039 5.8325 1.2664 30 1 4.9564 5.6690 -2.3604 31 1 2.9307 7.6099 -1.6128 32 1 6.5688 6.3548 0.0958 33 1 6.3153 8.1997 -1.4694 34 1 2.5505 4.1069 -2.0156 35 1 2.0913 -1.5003 2.1386 36 1 0.7563 -2.2707 1.2482 37 1 2.3298 -3.9684 2.1377 38 1 3.6649 -3.1967 1.2484 39 1 2.7541 -5.9973 0.7629 40 1 2.3305 -3.9667 -2.1406 41 1 3.6654 -3.1960 -1.2501 42 1 0.7563 -2.2697 -1.2502 43 1 2.0912 -1.4986 -2.1399 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9156390_14644196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:52:03 Heat of formation + Delta-G solvation = -77.985676 kcal Electronic energy + Delta-G solvation = -24211.817350 eV Core-core repulsion = 20644.823625 eV Total energy + Delta-G solvation = -3566.993725 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.37448 -41.23186 -39.60008 -37.72227 -37.27588 -35.28781 -33.10726 -31.94524 -31.93398 -30.27139 -28.93334 -27.65200 -25.28547 -23.88898 -23.32439 -21.49230 -21.32620 -20.84987 -20.20042 -18.87481 -18.27377 -18.16587 -17.55810 -16.85689 -16.67029 -16.25173 -16.06652 -15.59181 -15.36586 -14.89939 -14.85480 -14.57406 -14.39093 -14.24678 -14.08579 -13.98607 -13.84603 -13.63415 -13.45613 -13.29714 -13.04135 -12.83606 -12.77470 -12.37400 -12.23463 -12.12013 -12.01322 -11.68557 -11.30338 -10.95730 -10.80058 -10.64585 -9.81386 -9.68463 -8.97670 -4.97730 1.08597 1.25372 1.55088 1.68717 1.79846 1.93655 2.13193 2.46743 3.23829 3.47697 3.50341 3.63297 3.65061 3.78065 3.85233 3.98811 4.06826 4.14737 4.15312 4.24377 4.28215 4.33955 4.36450 4.38204 4.46436 4.56058 4.61695 4.70428 4.78395 4.80754 4.92070 4.94107 5.01096 5.03514 5.05980 5.20985 5.23944 5.27394 5.30611 5.52585 5.98601 6.11952 6.31770 6.63701 6.70478 6.84915 7.12438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.609 5.609 3 C 0.506 3.494 4 O -0.583 6.583 5 C -0.063 4.063 6 C 0.032 3.968 7 C -0.200 4.200 8 C -0.201 4.201 9 C -0.021 4.021 10 C -0.053 4.053 11 O -0.557 6.557 12 Si 0.812 3.188 13 N -0.538 5.538 14 C 0.136 3.864 15 H 0.064 0.936 16 C -0.116 4.116 17 C -0.146 4.146 18 C 0.105 3.895 19 H 0.075 0.925 20 O -0.591 6.591 21 C -0.114 4.114 22 C -0.112 4.112 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.145 0.855 27 H 0.126 0.874 28 H 0.141 0.859 29 H 0.154 0.846 30 H 0.099 0.901 31 H 0.398 0.602 32 H -0.296 1.296 33 H -0.292 1.292 34 H 0.417 0.583 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.395 0.605 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.527 -0.200 2.948 9.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.341 5.341 3 C 0.296 3.704 4 O -0.462 6.462 5 C -0.103 4.103 6 C -0.082 4.082 7 C -0.224 4.224 8 C -0.225 4.225 9 C -0.135 4.135 10 C -0.163 4.163 11 O -0.365 6.365 12 Si 0.717 3.283 13 N -0.134 5.134 14 C 0.033 3.967 15 H 0.083 0.917 16 C -0.154 4.154 17 C -0.184 4.184 18 C 0.047 3.953 19 H 0.093 0.907 20 O -0.400 6.400 21 C -0.152 4.152 22 C -0.150 4.150 23 H 0.090 0.910 24 H 0.107 0.893 25 H 0.114 0.886 26 H 0.163 0.837 27 H 0.144 0.856 28 H 0.159 0.841 29 H 0.172 0.828 30 H 0.116 0.884 31 H 0.248 0.752 32 H -0.224 1.224 33 H -0.219 1.219 34 H 0.255 0.745 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.245 0.755 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.110 0.890 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.664 -0.017 1.831 7.879 hybrid contribution 0.102 -1.042 -0.337 1.100 sum -7.561 -1.059 1.494 7.780 Atomic orbital electron populations 1.22191 0.76816 1.05450 1.03578 1.48000 1.08548 1.04715 1.72810 1.21162 0.87669 0.86417 0.75196 1.90740 1.16381 1.87821 1.51266 1.20279 0.95862 0.86008 1.08132 1.19939 1.03318 0.98312 0.86625 1.20850 1.02553 1.00525 0.98512 1.20924 1.05340 1.03135 0.93143 1.20991 1.00397 0.97070 0.95016 1.24927 0.97628 0.93643 1.00079 1.86440 1.54306 1.57737 1.38023 0.93075 0.76399 0.78938 0.79919 1.41899 1.35454 1.27102 1.08908 1.21058 0.96753 0.83077 0.95837 0.91734 1.21752 1.01910 0.95043 0.96741 1.22203 1.00485 0.96654 0.99098 1.21871 0.95661 0.83469 0.94322 0.90669 1.86491 1.70930 1.31604 1.50945 1.21454 1.00287 0.95430 0.98042 1.21725 1.01791 0.94494 0.97012 0.91033 0.89251 0.88579 0.83748 0.85559 0.84136 0.82832 0.88371 0.75209 1.22372 1.21945 0.74521 0.91931 0.88880 0.89504 0.92957 0.75500 0.90808 0.93121 0.88959 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.65 9.30 127.77 1.19 0.53 16 2 N -0.61 1.20 2.76 -822.61 -2.27 -1.08 16 3 C 0.51 1.82 7.67 87.66 0.67 2.49 16 4 O -0.58 -8.69 15.36 -3.05 -0.05 -8.74 16 5 C -0.06 0.22 4.79 29.10 0.14 0.36 16 6 C 0.03 0.11 5.66 41.08 0.23 0.34 16 7 C -0.20 -1.15 10.77 22.14 0.24 -0.91 16 8 C -0.20 -1.02 9.37 22.14 0.21 -0.81 16 9 C -0.02 -0.10 6.50 41.08 0.27 0.17 16 10 C -0.05 -0.13 3.08 71.23 0.22 0.09 16 11 O -0.56 -0.69 12.88 -148.98 -1.92 -2.61 16 12 Si 0.81 0.31 30.60 68.60 2.10 2.41 16 13 N -0.54 -1.97 6.07 -171.12 -1.04 -3.01 16 14 C 0.14 0.08 2.52 44.99 0.11 0.19 16 15 H 0.06 0.56 6.90 -2.39 -0.02 0.55 16 16 C -0.12 0.37 5.18 30.59 0.16 0.53 16 17 C -0.15 0.31 5.55 30.60 0.17 0.48 16 18 C 0.11 -0.14 3.47 30.60 0.11 -0.04 16 19 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 20 O -0.59 -1.09 13.32 -148.98 -1.98 -3.08 16 21 C -0.11 -0.11 5.57 30.61 0.17 0.06 16 22 C -0.11 0.20 5.21 30.61 0.16 0.36 16 23 H 0.07 -0.88 8.14 -2.39 -0.02 -0.90 16 24 H 0.09 -1.14 6.43 -2.39 -0.02 -1.16 16 25 H 0.10 -1.39 6.44 -2.39 -0.02 -1.40 16 26 H 0.14 -1.32 7.40 -2.39 -0.02 -1.34 16 27 H 0.13 -1.13 8.11 -2.39 -0.02 -1.15 16 28 H 0.14 0.50 8.06 -2.91 -0.02 0.48 16 29 H 0.15 0.17 6.24 -2.91 -0.02 0.15 16 30 H 0.10 0.41 7.96 -2.38 -0.02 0.40 16 31 H 0.40 -2.68 8.70 -74.06 -0.64 -3.32 16 32 H -0.30 -2.15 7.11 99.48 0.71 -1.44 16 33 H -0.29 -1.83 7.11 99.48 0.71 -1.12 16 34 H 0.42 0.17 8.96 -92.71 -0.83 -0.66 16 35 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.09 -0.73 6.66 -2.39 -0.02 -0.74 16 37 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 38 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.40 -2.58 9.08 -74.05 -0.67 -3.25 16 40 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.09 -0.58 7.67 -2.39 -0.02 -0.59 16 43 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 Total: 0.00 -26.09 343.59 -2.19 -28.28 By element: Atomic # 1 Polarization: -14.95 SS G_CDS: -1.07 Total: -16.02 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 4.04 Total: 3.85 kcal Atomic # 7 Polarization: -0.77 SS G_CDS: -3.31 Total: -4.08 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -3.95 Total: -14.43 kcal Atomic # 14 Polarization: 0.31 SS G_CDS: 2.10 Total: 2.41 kcal Total: -26.09 -2.19 -28.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9156390_14644196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.711 kcal (2) G-P(sol) polarization free energy of solvation -26.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds