Wall clock time and date at job start Mon Mar 8 2021 04:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50699 * 109.46830 * 240.00466 * 2 1 3 5 5 C 1.37946 * 119.92427 * 299.72724 * 4 2 1 6 6 C 1.39597 * 119.87496 * 179.75037 * 5 4 2 7 7 C 1.47844 * 120.13868 * 180.29127 * 6 5 4 8 8 O 1.21551 * 120.00192 * 0.22984 * 7 6 5 9 9 N 1.34781 * 120.00000 * 180.23286 * 7 6 5 10 10 C 1.46499 * 120.00168 * 180.02562 * 9 7 6 11 11 H 1.08996 * 112.85063 * 25.32796 * 10 9 7 12 12 C 1.53781 * 113.61399 * 156.52903 * 10 9 7 13 13 C 1.53778 * 87.08453 * 89.11450 * 12 10 9 14 14 H 1.09002 * 113.61338 * 270.80354 * 13 12 10 15 15 C 1.50702 * 113.61659 * 139.97753 * 13 12 10 16 16 C 1.38237 * 119.98673 * 299.72458 * 15 13 12 17 17 C 1.38210 * 120.01285 * 179.76447 * 16 15 13 18 18 C 1.38362 * 119.98584 * 0.53452 * 17 16 15 19 19 Cl 1.73595 * 120.01378 * 179.70291 * 18 17 16 20 20 C 1.38346 * 119.96959 * 359.72028 * 18 17 16 21 21 C 1.38214 * 119.99117 * 0.02562 * 20 18 17 22 22 C 1.53783 * 113.61313 * 254.13600 * 10 9 7 23 23 C 1.39547 * 119.71760 * 0.52047 * 6 5 4 24 24 C 1.38071 * 119.84433 * 359.74933 * 23 6 5 25 25 Br 1.89102 * 119.93692 * 180.02562 * 24 23 6 26 26 C 1.38372 * 119.92398 * 119.99381 * 4 2 1 27 27 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 28 28 H 1.08991 * 109.47274 * 120.00272 * 2 1 3 29 29 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 30 30 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 31 31 H 1.07999 * 120.05517 * 0.02562 * 5 4 2 32 32 H 0.97003 * 119.99729 * 359.97438 * 9 7 6 33 33 H 1.08999 * 113.60918 * 203.66093 * 12 10 9 34 34 H 1.08996 * 113.61700 * 334.47889 * 12 10 9 35 35 H 1.08005 * 119.99568 * 0.02562 * 16 15 13 36 36 H 1.07996 * 120.01267 * 180.25670 * 17 16 15 37 37 H 1.08002 * 120.00361 * 180.02562 * 20 18 17 38 38 H 1.08000 * 119.99876 * 179.97438 * 21 20 18 39 39 H 1.09002 * 113.61744 * 25.42695 * 22 10 9 40 40 H 1.08995 * 113.61745 * 156.33496 * 22 10 9 41 41 H 1.08002 * 120.07025 * 179.77197 * 23 6 5 42 42 H 1.08003 * 119.85180 * 359.96538 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.6017 -2.0326 -1.4445 6 6 2.0632 -2.6881 -2.5874 7 6 1.7081 -4.1033 -2.8258 8 8 1.0096 -4.6974 -2.0279 9 7 2.1591 -4.7348 -3.9278 10 6 1.8069 -6.1370 -4.1643 11 1 0.8775 -6.4284 -3.6749 12 6 1.8794 -6.5492 -5.6441 13 6 3.3535 -6.9068 -5.3909 14 1 4.0385 -6.0743 -5.5515 15 6 3.7956 -8.1705 -6.0827 16 6 3.1756 -9.3711 -5.7910 17 6 3.5773 -10.5296 -6.4287 18 6 4.6078 -10.4894 -7.3512 19 17 5.1182 -11.9453 -8.1470 20 6 5.2314 -9.2884 -7.6388 21 6 4.8253 -8.1296 -7.0043 22 6 2.9674 -7.1144 -3.9139 23 6 2.8650 -2.0032 -3.5014 24 6 3.1924 -0.6815 -3.2728 25 35 4.2782 0.2493 -4.5101 26 6 2.7266 -0.0362 -2.1404 27 1 -0.3934 0.4418 -0.7650 28 1 1.7923 -0.5138 0.8899 29 1 1.5616 2.4678 1.2086 30 1 3.5346 1.7703 -0.0322 31 1 0.9841 -2.5584 -0.7314 32 1 2.7163 -4.2606 -4.5646 33 1 1.2571 -7.4101 -5.8884 34 1 1.7430 -5.7182 -6.3360 35 1 2.3742 -9.4032 -5.0677 36 1 3.0902 -11.4668 -6.2039 37 1 6.0356 -9.2563 -8.3591 38 1 5.3123 -7.1921 -7.2284 39 1 3.7103 -6.7391 -3.2101 40 1 2.6421 -8.1295 -3.6863 41 1 3.2282 -2.5059 -4.3856 42 1 2.9848 0.9979 -1.9661 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9610464_12335870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:59:31 Heat of formation + Delta-G solvation = 17.218097 kcal Electronic energy + Delta-G solvation = -27848.202534 eV Core-core repulsion = 23639.771998 eV Total energy + Delta-G solvation = -4208.430536 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.007 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.88195 -41.03270 -40.00698 -38.86890 -37.67818 -37.35904 -34.85503 -33.60519 -32.98441 -32.06969 -31.38839 -30.44540 -27.08288 -26.71310 -26.53833 -25.07885 -23.83911 -22.82135 -22.54719 -21.68109 -20.22539 -19.18710 -18.34030 -17.82760 -17.68207 -17.24523 -16.80443 -16.49017 -16.34898 -16.25292 -16.07142 -15.68169 -15.30704 -15.23767 -14.96340 -14.71197 -14.54193 -14.37010 -14.29506 -14.15000 -13.62145 -13.48456 -13.30232 -13.22740 -13.02689 -12.61207 -12.44837 -12.20209 -12.02158 -11.95995 -11.94444 -11.75698 -11.61732 -11.46275 -11.23364 -11.20781 -10.59569 -10.34086 -10.10091 -10.00591 -9.90473 -9.49705 -5.05395 -0.52063 -0.15901 0.12219 0.32198 0.43801 1.16661 1.21312 1.50415 1.59249 1.88651 1.96139 2.45969 2.59182 3.27021 3.34337 3.43630 3.54098 3.65897 3.69398 3.80871 3.84624 3.87838 3.94737 3.96124 3.96524 4.20309 4.21738 4.28442 4.36180 4.43303 4.48105 4.62376 4.72988 4.75817 4.78257 4.83026 4.89811 4.92972 5.01538 5.04754 5.07959 5.13412 5.25711 5.27769 5.36668 5.47659 5.64513 5.84373 6.35332 6.71430 7.03098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.075 4.075 3 Si 0.771 3.229 4 C -0.116 4.116 5 C -0.030 4.030 6 C -0.135 4.135 7 C 0.563 3.437 8 O -0.571 6.571 9 N -0.693 5.693 10 C 0.114 3.886 11 H 0.088 0.912 12 C -0.123 4.123 13 C -0.066 4.066 14 H 0.117 0.883 15 C -0.068 4.068 16 C -0.108 4.108 17 C -0.119 4.119 18 C -0.056 4.056 19 Cl -0.084 7.084 20 C -0.119 4.119 21 C -0.105 4.105 22 C -0.144 4.144 23 C -0.043 4.043 24 C -0.099 4.099 25 Br -0.028 7.028 26 C -0.062 4.062 27 H 0.397 0.603 28 H 0.113 0.887 29 H -0.294 1.294 30 H -0.276 1.276 31 H 0.130 0.870 32 H 0.415 0.585 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.153 0.847 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.164 0.836 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.017 4.750 -4.524 6.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.184 4.184 3 Si 0.676 3.324 4 C -0.118 4.118 5 C -0.049 4.049 6 C -0.140 4.140 7 C 0.351 3.649 8 O -0.451 6.451 9 N -0.344 5.344 10 C 0.008 3.992 11 H 0.106 0.894 12 C -0.161 4.161 13 C -0.084 4.084 14 H 0.135 0.865 15 C -0.068 4.068 16 C -0.126 4.126 17 C -0.138 4.138 18 C -0.082 4.082 19 Cl -0.055 7.055 20 C -0.137 4.137 21 C -0.123 4.123 22 C -0.182 4.182 23 C -0.063 4.063 24 C -0.178 4.178 25 Br 0.058 6.942 26 C -0.081 4.081 27 H 0.247 0.753 28 H 0.130 0.870 29 H -0.222 1.222 30 H -0.203 1.203 31 H 0.148 0.852 32 H 0.254 0.746 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.164 0.836 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.170 0.830 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.181 0.819 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.545 4.805 -3.570 6.182 hybrid contribution 0.185 -1.185 0.311 1.239 sum 1.730 3.620 -3.259 5.169 Atomic orbital electron populations 1.86513 1.16873 1.82137 1.50563 1.25241 0.85603 1.11012 0.96591 0.93844 0.78299 0.74766 0.85472 1.20331 0.99355 0.94331 0.97732 1.21249 0.94848 0.93555 0.95273 1.19855 1.02812 0.93680 0.97604 1.18323 0.79046 0.86238 0.81330 1.90808 1.39436 1.68180 1.46697 1.45470 1.52795 1.12390 1.23777 1.21909 0.98763 0.80307 0.98192 0.89360 1.23376 0.95395 1.02901 0.94424 1.21687 0.97264 0.95044 0.94377 0.86512 1.19972 0.95424 0.95091 0.96310 1.21205 1.00470 0.91235 0.99693 1.21252 0.96275 1.00297 0.95949 1.21177 0.99649 0.88122 0.99258 1.98382 1.90527 1.37135 1.79471 1.21285 1.00496 0.91075 1.00891 1.21312 0.96720 0.98479 0.95794 1.23626 0.98039 1.00411 0.96160 1.21463 0.93954 0.92369 0.98551 1.21737 1.02947 0.95871 0.97260 1.96867 1.65645 1.75310 1.56372 1.21386 0.94557 1.00456 0.91691 0.75277 0.86987 1.22186 1.20270 0.85204 0.74633 0.87879 0.88949 0.83582 0.84421 0.84232 0.82972 0.91372 0.88299 0.81893 0.82684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.40 12.77 -148.98 -1.90 -1.51 16 2 C -0.07 0.15 2.82 71.24 0.20 0.35 16 3 Si 0.77 -3.20 29.78 68.60 2.04 -1.16 16 4 C -0.12 0.22 5.38 -19.90 -0.11 0.11 16 5 C -0.03 -0.05 9.16 22.53 0.21 0.16 16 6 C -0.14 0.02 5.87 -20.09 -0.12 -0.10 16 7 C 0.56 1.63 7.77 86.79 0.67 2.30 16 8 O -0.57 -6.80 15.97 -3.88 -0.06 -6.86 16 9 N -0.69 2.86 5.21 -442.91 -2.31 0.55 16 10 C 0.11 -0.43 4.30 45.52 0.20 -0.24 16 11 H 0.09 0.07 7.50 -2.39 -0.02 0.05 16 12 C -0.12 0.99 7.29 31.12 0.23 1.21 16 13 C -0.07 0.50 3.87 -10.92 -0.04 0.46 16 14 H 0.12 -1.26 8.09 -2.39 -0.02 -1.27 16 15 C -0.07 0.27 5.29 -19.86 -0.11 0.17 16 16 C -0.11 0.29 8.62 22.26 0.19 0.48 16 17 C -0.12 -0.02 9.83 22.29 0.22 0.20 16 18 C -0.06 -0.11 6.32 22.32 0.14 0.03 16 19 Cl -0.08 -0.31 28.96 -2.72 -0.08 -0.39 16 20 C -0.12 0.05 9.83 22.29 0.22 0.27 16 21 C -0.11 0.37 9.71 22.26 0.22 0.59 16 22 C -0.14 0.67 7.27 31.22 0.23 0.90 16 23 C -0.04 0.21 9.28 22.55 0.21 0.42 16 24 C -0.10 0.39 6.22 22.27 0.14 0.53 16 25 Br -0.03 0.12 33.69 -20.37 -0.69 -0.57 16 26 C -0.06 0.24 8.41 22.34 0.19 0.43 16 27 H 0.40 -3.63 8.70 -74.05 -0.64 -4.27 16 28 H 0.11 -0.08 7.96 -2.39 -0.02 -0.10 16 29 H -0.29 -1.06 7.11 99.48 0.71 -0.36 16 30 H -0.28 0.08 7.11 99.48 0.71 0.78 16 31 H 0.13 0.68 7.65 -2.91 -0.02 0.66 16 32 H 0.42 -4.30 6.74 -92.71 -0.62 -4.92 16 33 H 0.10 -0.81 7.73 -2.39 -0.02 -0.83 16 34 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 35 H 0.15 -0.88 6.64 -2.91 -0.02 -0.90 16 36 H 0.14 -0.21 8.06 -2.91 -0.02 -0.24 16 37 H 0.14 -0.34 8.06 -2.91 -0.02 -0.37 16 38 H 0.15 -1.26 8.05 -2.91 -0.02 -1.29 16 39 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.10 -0.48 6.30 -2.39 -0.02 -0.50 16 41 H 0.16 -1.76 6.40 -2.91 -0.02 -1.78 16 42 H 0.16 -1.11 4.86 -2.91 -0.01 -1.13 16 Total: 0.00 -19.00 386.86 -0.24 -19.24 By element: Atomic # 1 Polarization: -17.46 SS G_CDS: -0.13 Total: -17.59 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 2.88 Total: 8.28 kcal Atomic # 7 Polarization: 2.86 SS G_CDS: -2.31 Total: 0.55 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -1.96 Total: -8.37 kcal Atomic # 14 Polarization: -3.20 SS G_CDS: 2.04 Total: -1.16 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.08 Total: -0.39 kcal Atomic # 35 Polarization: 0.12 SS G_CDS: -0.69 Total: -0.57 kcal Total: -19.00 -0.24 -19.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9610464_12335870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.458 kcal (2) G-P(sol) polarization free energy of solvation -18.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds