Wall clock time and date at job start Mon Mar 8 2021 05:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86298 * 109.47172 * 2 1 4 4 C 1.50697 * 109.47165 * 120.00297 * 2 1 3 5 5 C 1.31116 * 118.54929 * 249.97459 * 4 2 1 6 6 N 1.38921 * 121.85135 * 180.38312 * 5 4 2 7 7 C 1.47032 * 118.88299 * 346.70897 * 6 5 4 8 8 C 1.50698 * 109.82348 * 163.20059 * 7 6 5 9 9 O 1.21279 * 119.99800 * 340.00556 * 8 7 6 10 10 N 1.34778 * 120.00125 * 159.99613 * 8 7 6 11 11 C 1.46494 * 120.00243 * 180.02562 * 10 8 7 12 12 H 1.09001 * 112.84646 * 336.20305 * 11 10 8 13 13 C 1.53782 * 113.61573 * 107.50177 * 11 10 8 14 14 C 1.53784 * 87.07611 * 89.11912 * 13 11 10 15 15 H 1.08997 * 113.69164 * 270.87221 * 14 13 11 16 16 C 1.50706 * 113.61222 * 139.98511 * 14 13 11 17 17 C 1.38242 * 119.98446 * 322.22291 * 16 14 13 18 18 C 1.38216 * 120.01299 * 179.77161 * 17 16 14 19 19 C 1.38351 * 119.98338 * 0.53014 * 18 17 16 20 20 Cl 1.73601 * 120.01235 * 179.70545 * 19 18 17 21 21 C 1.38357 * 119.97524 * 359.72467 * 19 18 17 22 22 C 1.38215 * 119.98712 * 359.97438 * 21 19 18 23 23 C 1.53781 * 87.08370 * 25.43577 * 14 13 11 24 24 C 1.53184 * 107.57631 * 43.65800 * 7 6 5 25 25 C 1.50207 * 118.54488 * 69.99870 * 4 2 1 26 26 H 0.96701 * 113.99603 * 59.99198 * 1 2 3 27 27 H 1.08999 * 109.46939 * 240.00219 * 2 1 3 28 28 H 1.48496 * 109.99902 * 60.00546 * 3 2 1 29 29 H 1.48504 * 110.00017 * 181.32071 * 3 2 1 30 30 H 1.08003 * 119.07194 * 0.40698 * 5 4 2 31 31 H 0.96994 * 120.55742 * 166.73030 * 6 5 4 32 32 H 1.09006 * 109.82407 * 284.06280 * 7 6 5 33 33 H 0.97005 * 119.99617 * 0.02562 * 10 8 7 34 34 H 1.08997 * 113.61861 * 203.66821 * 13 11 10 35 35 H 1.09002 * 113.61316 * 334.57365 * 13 11 10 36 36 H 1.08003 * 119.99712 * 0.02562 * 17 16 14 37 37 H 1.07999 * 120.00605 * 180.25981 * 18 17 16 38 38 H 1.07995 * 120.00288 * 179.97438 * 21 19 18 39 39 H 1.07994 * 119.99401 * 179.97438 * 22 21 19 40 40 H 1.08996 * 113.60961 * 220.02187 * 23 14 13 41 41 H 1.08996 * 113.69407 * 89.12322 * 23 14 13 42 42 H 1.08999 * 109.41267 * 179.25072 * 24 7 6 43 43 H 1.09000 * 109.64521 * 58.80536 * 24 7 6 44 44 H 1.09002 * 109.32969 * 280.20806 * 25 4 2 45 45 H 1.08996 * 109.33365 * 39.86136 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.5121 -0.0030 2.1693 6 7 3.0072 -0.5883 3.3278 7 6 2.6226 -1.9715 3.6450 8 6 3.5618 -2.5390 4.6779 9 8 4.6510 -2.0341 4.8496 10 7 3.1912 -3.6075 5.4110 11 6 4.1039 -4.1589 6.4155 12 1 5.1487 -3.9234 6.2126 13 6 3.6749 -3.8682 7.8634 14 6 2.8667 -5.1751 7.8030 15 1 1.8490 -5.0441 7.4354 16 6 2.9304 -5.9834 9.0734 17 6 4.1103 -6.0514 9.7905 18 6 4.1681 -6.7888 10.9582 19 6 3.0479 -7.4678 11.4033 20 17 3.1218 -8.4003 12.8657 21 6 1.8688 -7.4036 10.6823 22 6 1.8105 -6.6609 9.5181 23 6 3.8560 -5.6450 6.7236 24 6 2.7177 -2.7863 2.3514 25 6 1.7451 -2.1978 1.3267 26 1 -0.3933 0.4418 -0.7650 27 1 1.7923 -0.5138 -0.8900 28 1 1.5616 2.4678 1.2085 29 1 3.5347 1.7702 -0.0322 30 1 2.6078 1.0648 2.0384 31 1 3.5965 -0.0927 3.9176 32 1 1.6005 -1.9935 4.0233 33 1 2.3200 -4.0115 5.2735 34 1 4.4984 -3.8966 8.5769 35 1 3.0563 -2.9765 7.9648 36 1 4.9860 -5.5250 9.4406 37 1 5.0888 -6.8384 11.5206 38 1 0.9942 -7.9338 11.0291 39 1 0.8903 -6.6111 8.9550 40 1 3.3835 -6.1876 5.9049 41 1 4.7295 -6.1595 7.1241 42 1 2.4507 -3.8232 2.5559 43 1 3.7343 -2.7373 1.9614 44 1 0.7221 -2.4142 1.6345 45 1 1.9316 -2.6487 0.3520 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9610464_15413834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:01:39 Heat of formation + Delta-G solvation = 2.937446 kcal Electronic energy + Delta-G solvation = -27301.549926 eV Core-core repulsion = 23312.269269 eV Total energy + Delta-G solvation = -3989.280657 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.123 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.86063 -40.93094 -39.72404 -38.82918 -37.41370 -37.29943 -34.78473 -33.39473 -33.09471 -32.09438 -31.47428 -27.80230 -26.73471 -26.04310 -25.41910 -24.00057 -23.65171 -22.61512 -21.99458 -20.25833 -19.29980 -19.14600 -18.34586 -18.21640 -17.64159 -17.26725 -16.71493 -16.45609 -16.22007 -15.98117 -15.55793 -15.31966 -15.29268 -14.89731 -14.67270 -14.62437 -14.47397 -14.35393 -14.18855 -13.81603 -13.71494 -13.59812 -13.50224 -13.28233 -12.95193 -12.63124 -12.47054 -12.45711 -12.03888 -11.96529 -11.77167 -11.73362 -11.63078 -11.41561 -11.26198 -10.98153 -10.21160 -10.08700 -10.03017 -9.51880 -8.61120 -4.92618 0.09964 0.29864 1.14675 1.16846 1.33185 1.38346 1.63721 1.77053 1.97220 2.48663 2.56815 3.41793 3.42704 3.55286 3.63179 3.67240 3.70027 3.82587 3.87668 3.92532 3.94348 3.98646 4.17315 4.18397 4.33730 4.33975 4.41122 4.54493 4.57690 4.60454 4.70786 4.71839 4.75143 4.81317 4.87677 4.93842 4.98959 5.02305 5.10360 5.14782 5.17971 5.23533 5.25520 5.43951 5.46442 5.62233 5.82097 6.10683 6.36224 6.62040 7.02845 7.03528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.050 4.050 3 Si 0.750 3.250 4 C -0.243 4.243 5 C 0.116 3.884 6 N -0.740 5.740 7 C 0.138 3.862 8 C 0.518 3.482 9 O -0.573 6.573 10 N -0.691 5.691 11 C 0.114 3.886 12 H 0.085 0.915 13 C -0.143 4.143 14 C -0.065 4.065 15 H 0.118 0.882 16 C -0.069 4.069 17 C -0.109 4.109 18 C -0.119 4.119 19 C -0.055 4.055 20 Cl -0.083 7.083 21 C -0.119 4.119 22 C -0.105 4.105 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.051 4.051 26 H 0.396 0.604 27 H 0.082 0.918 28 H -0.299 1.299 29 H -0.299 1.299 30 H 0.116 0.884 31 H 0.404 0.596 32 H 0.110 0.890 33 H 0.420 0.580 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.153 0.847 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.202 -1.708 -4.593 6.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.162 4.162 3 Si 0.659 3.341 4 C -0.253 4.253 5 C -0.004 4.004 6 N -0.373 5.373 7 C 0.029 3.971 8 C 0.304 3.696 9 O -0.452 6.452 10 N -0.343 5.343 11 C 0.009 3.991 12 H 0.103 0.897 13 C -0.182 4.182 14 C -0.083 4.083 15 H 0.136 0.864 16 C -0.069 4.069 17 C -0.127 4.127 18 C -0.138 4.138 19 C -0.082 4.082 20 Cl -0.055 7.055 21 C -0.137 4.137 22 C -0.123 4.123 23 C -0.161 4.161 24 C -0.161 4.161 25 C -0.088 4.088 26 H 0.247 0.753 27 H 0.100 0.900 28 H -0.227 1.227 29 H -0.227 1.227 30 H 0.133 0.867 31 H 0.240 0.760 32 H 0.128 0.872 33 H 0.257 0.743 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.170 0.830 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.127 0.873 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.917 -1.295 -3.358 4.632 hybrid contribution 0.285 -0.288 0.987 1.067 sum -2.631 -1.583 -2.371 3.880 Atomic orbital electron populations 1.86458 1.17985 1.82131 1.50955 1.24495 0.85204 1.08769 0.97733 0.94703 0.77218 0.77288 0.84865 1.20507 1.11341 0.96891 0.96570 1.20305 0.97479 0.95487 0.87121 1.44316 1.55038 1.13313 1.24652 1.21088 0.97781 0.83386 0.94795 1.20764 0.87141 0.80392 0.81320 1.90725 1.24254 1.60996 1.69240 1.45473 1.20686 1.30839 1.37290 1.21874 0.94290 0.95222 0.87760 0.89699 1.23566 1.00604 0.97573 0.96455 1.21633 1.00534 0.94136 0.91978 0.86433 1.19986 0.93246 0.97152 0.96490 1.21198 0.98866 0.98577 0.94014 1.21250 0.97801 0.97223 0.97511 1.21177 0.96886 0.99483 0.90647 1.98383 1.98690 1.72314 1.36074 1.21294 0.96849 1.00072 0.95511 1.21316 0.99462 0.96056 0.95470 1.23374 1.00053 0.94236 0.98458 1.21821 1.00653 1.00116 0.93490 1.20010 0.99057 0.90288 0.99457 0.75345 0.90030 1.22730 1.22675 0.86687 0.76043 0.87224 0.74250 0.88504 0.91366 0.83678 0.84419 0.84186 0.82954 0.88925 0.88118 0.87349 0.92323 0.90514 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -0.03 12.86 -148.98 -1.92 -1.94 16 2 C -0.05 -0.01 2.80 71.23 0.20 0.19 16 3 Si 0.75 -0.14 29.92 68.60 2.05 1.92 16 4 C -0.24 -0.95 5.40 -16.76 -0.09 -1.04 16 5 C 0.12 0.69 9.61 83.41 0.80 1.49 16 6 N -0.74 -3.56 5.46 -329.57 -1.80 -5.35 16 7 C 0.14 -0.03 3.35 44.20 0.15 0.12 16 8 C 0.52 0.92 7.08 87.66 0.62 1.54 16 9 O -0.57 -6.29 15.70 -3.03 -0.05 -6.34 16 10 N -0.69 3.51 5.26 -440.05 -2.32 1.20 16 11 C 0.11 -0.46 4.32 45.52 0.20 -0.26 16 12 H 0.08 0.09 7.46 -2.39 -0.02 0.07 16 13 C -0.14 0.68 7.25 31.12 0.23 0.91 16 14 C -0.06 0.49 3.86 -11.01 -0.04 0.45 16 15 H 0.12 -1.26 8.09 -2.39 -0.02 -1.28 16 16 C -0.07 0.26 5.29 -19.86 -0.11 0.16 16 17 C -0.11 0.27 8.60 22.27 0.19 0.46 16 18 C -0.12 -0.05 9.83 22.29 0.22 0.17 16 19 C -0.06 -0.12 6.32 22.33 0.14 0.02 16 20 Cl -0.08 -0.32 28.96 -2.72 -0.08 -0.40 16 21 C -0.12 0.03 9.83 22.29 0.22 0.25 16 22 C -0.11 0.35 9.71 22.27 0.22 0.57 16 23 C -0.12 0.98 7.29 31.12 0.23 1.21 16 24 C -0.12 0.22 5.44 30.67 0.17 0.39 16 25 C -0.05 0.01 5.86 29.71 0.17 0.18 16 26 H 0.40 -3.89 8.74 -74.06 -0.65 -4.54 16 27 H 0.08 -0.25 7.96 -2.39 -0.02 -0.27 16 28 H -0.30 -2.08 6.88 99.48 0.68 -1.40 16 29 H -0.30 -1.96 7.11 99.48 0.71 -1.25 16 30 H 0.12 0.76 4.34 -2.91 -0.01 0.75 16 31 H 0.40 2.39 8.12 -92.71 -0.75 1.64 16 32 H 0.11 -0.44 8.14 -2.38 -0.02 -0.46 16 33 H 0.42 -4.80 8.70 -92.70 -0.81 -5.60 16 34 H 0.10 -0.45 6.32 -2.39 -0.02 -0.47 16 35 H 0.07 -0.19 8.14 -2.39 -0.02 -0.20 16 36 H 0.15 -0.82 6.67 -2.91 -0.02 -0.84 16 37 H 0.14 -0.19 8.06 -2.91 -0.02 -0.21 16 38 H 0.14 -0.33 8.06 -2.91 -0.02 -0.35 16 39 H 0.15 -1.23 8.05 -2.91 -0.02 -1.26 16 40 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 41 H 0.10 -0.75 7.72 -2.39 -0.02 -0.77 16 42 H 0.11 -0.82 8.14 -2.39 -0.02 -0.84 16 43 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 45 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 Total: 0.00 -20.70 379.29 -1.74 -22.43 By element: Atomic # 1 Polarization: -17.15 SS G_CDS: -1.14 Total: -18.29 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 3.51 Total: 6.78 kcal Atomic # 7 Polarization: -0.04 SS G_CDS: -4.12 Total: -4.16 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -1.96 Total: -8.28 kcal Atomic # 14 Polarization: -0.14 SS G_CDS: 2.05 Total: 1.92 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.40 kcal Total: -20.70 -1.74 -22.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9610464_15413834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.372 kcal (2) G-P(sol) polarization free energy of solvation -20.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds