Wall clock time and date at job start Mon Mar 8 2021 06:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38212 * 120.00198 * 2 1 4 4 C 1.38255 * 120.00263 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.00232 * 179.97438 * 4 3 2 6 6 H 1.08998 * 112.85041 * 11.19328 * 5 4 3 7 7 C 1.53787 * 113.61763 * 142.50003 * 5 4 3 8 8 C 1.53781 * 87.08169 * 139.98055 * 7 5 4 9 9 H 1.08997 * 113.61140 * 220.02236 * 8 7 5 10 10 N 1.46499 * 113.61480 * 89.11843 * 8 7 5 11 11 C 1.34770 * 120.00184 * 107.50031 * 10 8 7 12 12 O 1.21282 * 119.99580 * 0.02562 * 11 10 8 13 13 C 1.50698 * 120.00145 * 180.02562 * 11 10 8 14 14 N 1.46504 * 109.47018 * 180.02562 * 13 11 10 15 15 C 1.36838 * 125.06054 * 265.02298 * 14 13 11 16 16 C 1.34234 * 109.93510 * 180.02562 * 15 14 13 17 17 C 1.50704 * 126.49432 * 180.02562 * 16 15 14 18 18 O 1.42904 * 109.46810 * 255.02243 * 17 16 15 19 19 Si 1.86291 * 109.47425 * 15.02482 * 17 16 15 20 20 C 1.46484 * 107.00163 * 0.02562 * 16 15 14 21 21 C 1.39597 * 134.03653 * 180.02562 * 20 16 15 22 22 C 1.36661 * 119.75928 * 179.23697 * 21 20 16 23 23 C 1.38786 * 120.53481 * 0.65697 * 22 21 20 24 24 C 1.37790 * 120.66304 * 359.57598 * 23 22 21 25 25 C 1.37693 * 125.06432 * 84.72145 * 14 13 11 26 26 C 1.53784 * 87.08251 * 334.56754 * 8 7 5 27 27 C 1.38217 * 119.99761 * 359.97438 * 4 3 2 28 28 C 1.38256 * 120.00088 * 359.97438 * 27 4 3 29 29 C 1.38215 * 119.99734 * 0.02885 * 28 27 4 30 30 H 1.08997 * 109.47013 * 270.02686 * 1 2 3 31 31 H 1.09005 * 109.46873 * 30.02029 * 1 2 3 32 32 H 1.08998 * 109.47033 * 150.02519 * 1 2 3 33 33 H 1.08000 * 119.99961 * 359.97326 * 3 2 1 34 34 H 1.08991 * 113.61239 * 254.53257 * 7 5 4 35 35 H 1.08997 * 113.60892 * 25.43129 * 7 5 4 36 36 H 0.97005 * 119.99478 * 287.50020 * 10 8 7 37 37 H 1.09004 * 109.46789 * 299.99703 * 13 11 10 38 38 H 1.08989 * 109.47435 * 60.00093 * 13 11 10 39 39 H 1.08004 * 125.02930 * 359.97438 * 15 14 13 40 40 H 1.09001 * 109.46817 * 135.02938 * 17 16 15 41 41 H 0.96702 * 113.99563 * 179.97438 * 18 17 16 42 42 H 1.48505 * 109.99989 * 299.99818 * 19 17 16 43 43 H 1.48499 * 110.00147 * 61.31759 * 19 17 16 44 44 H 1.07998 * 120.11329 * 359.97306 * 21 20 16 45 45 H 1.08005 * 119.73498 * 180.21254 * 22 21 20 46 46 H 1.07993 * 119.67363 * 179.60126 * 23 22 21 47 47 H 1.08003 * 120.11629 * 179.97438 * 24 23 22 48 48 H 1.08997 * 113.61718 * 270.88486 * 26 8 7 49 49 H 1.08999 * 113.61507 * 139.98252 * 26 8 7 50 50 H 1.08001 * 119.99701 * 180.02562 * 27 4 3 51 51 H 1.07995 * 120.00047 * 180.29818 * 28 27 4 52 52 H 1.08000 * 119.99306 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1969 0.0000 4 6 3.5806 1.1969 -0.0005 5 6 4.3342 2.5020 -0.0011 6 1 3.6926 3.3613 0.1939 7 6 5.6107 2.4768 0.8562 8 6 6.2810 3.2974 -0.2583 9 1 7.3076 2.9955 -0.4655 10 7 6.1354 4.7453 -0.0895 11 6 7.1955 5.4906 0.2807 12 8 8.2702 4.9626 0.4736 13 6 7.0456 6.9800 0.4549 14 7 8.3311 7.5565 0.8566 15 6 8.7135 7.8018 2.1474 16 6 9.9464 8.3323 2.1665 17 6 10.7264 8.7434 3.3887 18 8 10.7249 10.1683 3.4977 19 14 9.9386 8.0037 4.9061 20 6 10.3899 8.4357 0.7742 21 6 11.5548 8.8969 0.1586 22 6 11.6694 8.8441 -1.2022 23 6 10.6313 8.3481 -1.9785 24 6 9.4709 7.8923 -1.3919 25 6 9.3368 7.9267 -0.0079 26 6 5.2519 2.6829 -1.2218 27 6 4.2717 -0.0001 -0.0005 28 6 3.5804 -1.1974 0.0005 29 6 2.1982 -1.1973 0.0010 30 1 -0.3633 0.0005 1.0276 31 1 -0.3633 0.8899 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 1.6581 2.1322 -0.0004 34 1 5.5146 3.0164 1.7982 35 1 6.0341 1.4800 0.9794 36 1 5.2759 5.1676 -0.2442 37 1 6.7266 7.4256 -0.4874 38 1 6.3000 7.1827 1.2235 39 1 8.1120 7.5995 3.0213 40 1 11.7528 8.3869 3.3016 41 1 11.2094 10.5046 4.2640 42 1 8.5388 8.4822 5.0362 43 1 9.9627 6.5214 4.8196 44 1 12.3672 9.2829 0.7563 45 1 12.5722 9.1978 -1.6779 46 1 10.7342 8.3187 -3.0531 47 1 8.6685 7.5085 -2.0045 48 1 5.5773 1.7425 -1.6666 49 1 4.8663 3.3890 -1.9572 50 1 5.3517 0.0000 -0.0005 51 1 4.1203 -2.1327 0.0054 52 1 1.6583 -2.1326 0.0014 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9650858_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:38:52 Heat of formation + Delta-G solvation = 57.183019 kcal Electronic energy + Delta-G solvation = -33033.200158 eV Core-core repulsion = 28737.629377 eV Total energy + Delta-G solvation = -4295.570781 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.178 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.66413 -41.61686 -40.43146 -39.01449 -38.09808 -37.59079 -34.95336 -34.24138 -33.36638 -32.03851 -31.40390 -30.37688 -29.11347 -27.81778 -26.76730 -26.42065 -25.52709 -23.89025 -23.10980 -22.98857 -22.10571 -21.81756 -20.63715 -19.92232 -18.78439 -18.29473 -18.22561 -17.81859 -17.67787 -16.98973 -16.55204 -16.47022 -16.40334 -16.10129 -15.78318 -15.53778 -15.12209 -15.00424 -14.99242 -14.79261 -14.75593 -14.66405 -14.37796 -14.20602 -14.04934 -13.89844 -13.64600 -13.55228 -13.37284 -13.06580 -12.84145 -12.76111 -12.75059 -12.65413 -12.49025 -12.21024 -12.08074 -11.82550 -11.76904 -11.71371 -11.29216 -11.25197 -10.65306 -10.26488 -10.19467 -9.71938 -9.48903 -9.26751 -8.74721 -4.99348 0.03837 0.37609 0.44355 0.56347 1.28046 1.29909 1.31149 1.48741 1.67781 1.96183 2.04981 2.74407 2.88138 3.38515 3.42865 3.46429 3.53859 3.60612 3.65388 3.66004 3.79009 3.87156 3.95811 3.96154 4.00325 4.02494 4.13405 4.17764 4.21440 4.21793 4.34581 4.45095 4.49724 4.51148 4.56666 4.60493 4.68403 4.69542 4.70456 4.76188 4.77407 4.82874 4.86691 4.91503 4.98312 5.05531 5.06471 5.14999 5.26848 5.42025 5.43683 5.54356 5.57803 5.64576 5.65408 5.66894 5.69621 6.03096 6.09563 6.14511 6.34220 6.98654 7.00517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.097 4.097 3 C -0.128 4.128 4 C -0.075 4.075 5 C -0.062 4.062 6 H 0.114 0.886 7 C -0.143 4.143 8 C 0.117 3.883 9 H 0.079 0.921 10 N -0.692 5.692 11 C 0.494 3.506 12 O -0.571 6.571 13 C 0.087 3.913 14 N -0.467 5.467 15 C 0.052 3.948 16 C -0.180 4.180 17 C -0.046 4.046 18 O -0.565 6.565 19 Si 0.785 3.215 20 C -0.119 4.119 21 C -0.082 4.082 22 C -0.151 4.151 23 C -0.102 4.102 24 C -0.136 4.136 25 C 0.090 3.910 26 C -0.122 4.122 27 C -0.135 4.135 28 C -0.126 4.126 29 C -0.140 4.140 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.135 0.865 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.421 0.579 37 H 0.150 0.850 38 H 0.156 0.844 39 H 0.174 0.826 40 H 0.075 0.925 41 H 0.399 0.601 42 H -0.280 1.280 43 H -0.302 1.302 44 H 0.128 0.872 45 H 0.144 0.856 46 H 0.150 0.850 47 H 0.134 0.866 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.128 0.872 51 H 0.132 0.868 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.972 0.974 0.402 5.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.075 4.075 5 C -0.080 4.080 6 H 0.132 0.868 7 C -0.182 4.182 8 C 0.011 3.989 9 H 0.097 0.903 10 N -0.345 5.345 11 C 0.280 3.720 12 O -0.449 6.449 13 C -0.038 4.038 14 N -0.150 5.150 15 C -0.073 4.073 16 C -0.187 4.187 17 C -0.156 4.156 18 O -0.374 6.374 19 Si 0.690 3.310 20 C -0.124 4.124 21 C -0.100 4.100 22 C -0.170 4.170 23 C -0.121 4.121 24 C -0.157 4.157 25 C -0.015 4.015 26 C -0.160 4.160 27 C -0.153 4.153 28 C -0.144 4.144 29 C -0.158 4.158 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.153 0.847 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.259 0.741 37 H 0.167 0.833 38 H 0.173 0.827 39 H 0.191 0.809 40 H 0.092 0.908 41 H 0.250 0.750 42 H -0.207 1.207 43 H -0.230 1.230 44 H 0.146 0.854 45 H 0.162 0.838 46 H 0.168 0.832 47 H 0.152 0.848 48 H 0.114 0.886 49 H 0.110 0.890 50 H 0.146 0.854 51 H 0.150 0.850 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.516 -0.067 0.232 5.521 hybrid contribution -0.178 -0.391 -0.527 0.679 sum -5.694 -0.457 -0.294 5.720 Atomic orbital electron populations 1.20839 0.90038 1.03491 1.02851 1.20241 0.97178 0.93305 0.98958 1.21176 0.93728 0.98185 1.01455 1.19845 0.93608 0.94865 0.99166 1.21577 0.94513 0.95145 0.96793 0.86784 1.23538 0.96005 1.00891 0.97743 1.21809 0.99783 0.79834 0.97481 0.90278 1.45465 1.12969 1.07088 1.68971 1.21398 0.84068 0.90299 0.76247 1.90798 1.28642 1.74363 1.51075 1.21988 0.84747 0.89438 1.07604 1.43391 1.14237 1.53019 1.04373 1.21713 0.96207 1.02297 0.87079 1.20051 0.95867 1.09688 0.93120 1.24224 1.02771 0.86423 1.02149 1.86483 1.78810 1.18898 1.53232 0.94271 0.79907 0.75853 0.80985 1.19350 0.95769 1.04624 0.92610 1.20500 0.95902 0.98378 0.95241 1.20984 1.00395 1.02323 0.93253 1.21198 0.92290 0.97561 1.01023 1.20271 1.00355 1.04976 0.90068 1.18488 0.89064 1.01428 0.92532 1.23343 0.94556 1.01940 0.96176 1.21181 1.00389 0.92236 1.01489 1.21386 0.94629 0.98725 0.99621 1.21306 0.94630 0.98278 1.01580 0.90725 0.90727 0.91078 0.84738 0.91467 0.89048 0.74067 0.83269 0.82687 0.80873 0.90752 0.75046 1.20681 1.22968 0.85387 0.83800 0.83192 0.84819 0.88604 0.88981 0.85425 0.85038 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.29 10.01 71.23 0.71 1.00 16 2 C -0.10 -0.13 5.88 -19.87 -0.12 -0.25 16 3 C -0.13 -0.03 9.37 22.27 0.21 0.18 16 4 C -0.07 0.01 5.29 -19.87 -0.11 -0.10 16 5 C -0.06 0.27 3.86 -11.01 -0.04 0.23 16 6 H 0.11 -0.89 8.09 -2.39 -0.02 -0.91 16 7 C -0.14 0.23 7.25 31.12 0.23 0.45 16 8 C 0.12 -0.16 4.32 45.52 0.20 0.03 16 9 H 0.08 0.36 7.47 -2.39 -0.02 0.34 16 10 N -0.69 2.97 5.26 -440.05 -2.32 0.66 16 11 C 0.49 1.20 7.90 87.66 0.69 1.89 16 12 O -0.57 -8.20 16.02 -3.04 -0.05 -8.24 16 13 C 0.09 -0.23 6.48 85.63 0.56 0.32 16 14 N -0.47 -3.36 2.27 -519.99 -1.18 -4.54 16 15 C 0.05 0.47 9.89 83.00 0.82 1.29 16 16 C -0.18 -2.04 5.61 -18.63 -0.10 -2.14 16 17 C -0.05 -0.23 3.05 71.24 0.22 -0.01 16 18 O -0.56 -2.36 12.86 -148.98 -1.92 -4.27 16 19 Si 0.79 0.61 30.79 68.60 2.11 2.73 16 20 C -0.12 -1.58 6.35 -20.20 -0.13 -1.70 16 21 C -0.08 -0.84 10.05 22.23 0.22 -0.62 16 22 C -0.15 -1.02 9.97 22.03 0.22 -0.80 16 23 C -0.10 -0.57 10.01 22.29 0.22 -0.35 16 24 C -0.14 -0.99 10.00 22.37 0.22 -0.77 16 25 C 0.09 0.98 6.80 39.03 0.27 1.25 16 26 C -0.12 0.60 7.29 31.12 0.23 0.83 16 27 C -0.14 -0.16 8.61 22.27 0.19 0.03 16 28 C -0.13 -0.23 10.05 22.27 0.22 -0.01 16 29 C -0.14 -0.28 9.70 22.27 0.22 -0.06 16 30 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.07 -0.31 8.09 -2.38 -0.02 -0.33 16 32 H 0.07 -0.23 8.09 -2.39 -0.02 -0.25 16 33 H 0.13 -0.48 8.05 -2.91 -0.02 -0.50 16 34 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.09 -0.05 6.31 -2.39 -0.02 -0.06 16 36 H 0.42 -4.97 8.70 -92.70 -0.81 -5.77 16 37 H 0.15 -1.30 8.14 -2.39 -0.02 -1.32 16 38 H 0.16 -1.51 8.12 -2.39 -0.02 -1.53 16 39 H 0.17 0.85 6.30 -2.91 -0.02 0.83 16 40 H 0.07 0.23 7.96 -2.39 -0.02 0.21 16 41 H 0.40 -2.82 8.74 -74.06 -0.65 -3.47 16 42 H -0.28 -1.35 7.04 99.48 0.70 -0.65 16 43 H -0.30 -2.51 7.11 99.48 0.71 -1.80 16 44 H 0.13 0.96 8.06 -2.91 -0.02 0.94 16 45 H 0.14 0.23 8.06 -2.91 -0.02 0.21 16 46 H 0.15 -0.03 8.06 -2.91 -0.02 -0.05 16 47 H 0.13 0.30 8.06 -2.91 -0.02 0.28 16 48 H 0.10 -0.35 7.72 -2.39 -0.02 -0.37 16 49 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 50 H 0.13 -0.13 6.66 -2.91 -0.02 -0.14 16 51 H 0.13 -0.15 8.06 -2.91 -0.02 -0.17 16 52 H 0.13 -0.10 8.06 -2.91 -0.02 -0.12 16 Total: 0.00 -29.92 430.30 1.32 -28.59 By element: Atomic # 1 Polarization: -15.15 SS G_CDS: -0.47 Total: -15.63 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 5.15 Total: 0.70 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -3.50 Total: -3.88 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -1.96 Total: -12.52 kcal Atomic # 14 Polarization: 0.61 SS G_CDS: 2.11 Total: 2.73 kcal Total: -29.92 1.32 -28.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650858_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.778 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds