Wall clock time and date at job start Mon Mar 8 2021 04:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86293 * 109.47318 * 2 1 4 4 C 1.86300 * 109.47468 * 239.99557 * 2 1 3 5 5 C 1.86304 * 109.46900 * 119.99616 * 2 1 3 6 6 C 1.53010 * 109.47018 * 59.99899 * 5 2 1 7 7 C 1.52997 * 109.47191 * 179.97438 * 6 5 2 8 8 N 1.46499 * 109.47012 * 180.02562 * 7 6 5 9 9 C 1.34779 * 119.99872 * 180.02562 * 8 7 6 10 10 O 1.21286 * 120.00040 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00201 * 179.97438 * 9 8 7 12 12 C 1.52992 * 109.47592 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 9 14 14 O 1.42898 * 109.47319 * 180.02562 * 13 12 11 15 15 C 1.35900 * 117.00172 * 179.97438 * 14 13 12 16 16 C 1.38710 * 120.05544 * 359.72769 * 15 14 13 17 17 C 1.38159 * 119.94311 * 179.72143 * 16 15 14 18 18 C 1.38250 * 120.05742 * 0.57011 * 17 16 15 19 19 C 1.38280 * 120.10833 * 359.68104 * 18 17 16 20 20 C 1.50697 * 119.97205 * 180.02562 * 19 18 17 21 21 O 1.42902 * 109.47393 * 245.02079 * 20 19 18 22 22 Si 1.86306 * 109.47148 * 5.02162 * 20 19 18 23 23 H 1.48504 * 109.46673 * 59.99962 * 22 20 19 24 24 H 1.48495 * 109.47180 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.46932 * 300.00295 * 22 20 19 26 26 C 1.38129 * 120.05716 * 0.04353 * 19 18 17 27 27 H 1.09002 * 109.47176 * 300.00293 * 1 2 3 28 28 H 1.09000 * 109.46368 * 60.00033 * 1 2 3 29 29 H 1.08996 * 109.46896 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47688 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47615 * 299.99810 * 3 2 1 32 32 H 1.09002 * 109.47236 * 59.99744 * 3 2 1 33 33 H 1.09000 * 109.47053 * 300.00427 * 4 2 1 34 34 H 1.09004 * 109.46909 * 60.00311 * 4 2 1 35 35 H 1.09001 * 109.47383 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.47734 * 300.00311 * 5 2 1 37 37 H 1.09001 * 109.47312 * 179.97438 * 5 2 1 38 38 H 1.09001 * 109.46274 * 60.00161 * 6 5 2 39 39 H 1.08988 * 109.47194 * 300.00401 * 6 5 2 40 40 H 1.09002 * 109.47045 * 60.00167 * 7 6 5 41 41 H 1.09001 * 109.46922 * 300.00375 * 7 6 5 42 42 H 0.96992 * 119.99793 * 359.97438 * 8 7 6 43 43 H 1.09002 * 109.47210 * 59.99599 * 11 9 8 44 44 H 1.09001 * 109.46665 * 299.99857 * 11 9 8 45 45 H 1.09002 * 109.47103 * 59.99616 * 12 11 9 46 46 H 1.08998 * 109.46862 * 300.00428 * 12 11 9 47 47 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 48 48 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 49 49 H 1.08006 * 120.02494 * 359.97438 * 16 15 14 50 50 H 1.08006 * 119.97038 * 180.27439 * 17 16 15 51 51 H 1.08000 * 119.94133 * 179.70045 * 18 17 16 52 52 H 1.09005 * 109.47122 * 125.02014 * 20 19 18 53 53 H 0.96696 * 113.99487 * 59.99932 * 21 20 19 54 54 H 1.07998 * 120.02418 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5210 5 6 2.4840 -0.8782 1.5212 6 6 1.9739 -2.3207 1.5213 7 6 2.4843 -3.0421 2.7703 8 7 1.9964 -4.4235 2.7700 9 6 2.3220 -5.2534 3.7808 10 8 3.0194 -4.8567 4.6904 11 6 1.8197 -6.6741 3.7809 12 6 2.3302 -7.3956 5.0297 13 6 1.8197 -8.8379 5.0301 14 8 2.2960 -9.5115 6.1968 15 6 1.9300 -10.8111 6.3516 16 6 1.1242 -11.4236 5.4031 17 6 0.7582 -12.7466 5.5598 18 6 1.1846 -13.4565 6.6668 19 6 1.9836 -12.8467 7.6165 20 6 2.4471 -13.6236 8.8217 21 8 1.8758 -13.0567 10.0025 22 14 1.9068 -15.3993 8.6613 23 1 2.5005 -15.9884 7.4342 24 1 2.3640 -16.1651 9.8486 25 1 0.4257 -15.4600 8.5728 26 6 2.3570 -11.5259 7.4615 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1208 2.2703 -0.8899 32 1 2.1207 2.2703 0.8900 33 1 2.1208 -1.9060 -1.5210 34 1 2.1208 -0.3645 -2.4111 35 1 3.5741 -0.8779 -1.5212 36 1 2.1206 -0.3644 2.4113 37 1 3.5740 -0.8786 1.5211 38 1 2.3373 -2.8345 0.6313 39 1 0.8840 -2.3207 1.5212 40 1 2.1213 -2.5284 3.6604 41 1 3.5743 -3.0421 2.7698 42 1 1.4385 -4.7405 2.0427 43 1 2.1829 -7.1880 2.8909 44 1 0.7297 -6.6741 3.7810 45 1 1.9673 -6.8819 5.9200 46 1 3.4202 -7.3956 5.0292 47 1 2.1822 -9.3519 4.1398 48 1 0.7297 -8.8374 5.0308 49 1 0.7867 -10.8679 4.5407 50 1 0.1345 -13.2252 4.8193 51 1 0.8934 -14.4892 6.7899 52 1 3.5343 -13.5791 8.8866 53 1 0.9089 -13.0629 10.0136 54 1 2.9814 -11.0502 8.2033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_4549616.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:08:07 Heat of formation + Delta-G solvation = -146.755782 kcal Electronic energy + Delta-G solvation = -27274.479419 eV Core-core repulsion = 23334.185169 eV Total energy + Delta-G solvation = -3940.294250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.198 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.29912 -40.77592 -39.19245 -37.30678 -36.82403 -34.90024 -33.45654 -32.45961 -31.24946 -29.46528 -28.68213 -28.29619 -28.26431 -26.95142 -26.20486 -23.73837 -23.34522 -22.45675 -21.85315 -21.17049 -19.19457 -18.10426 -17.95294 -17.50193 -17.20907 -16.97272 -16.81975 -16.76995 -16.17135 -15.84150 -15.62018 -15.07910 -14.94597 -14.65545 -14.49550 -14.27793 -14.11697 -14.05723 -13.96895 -13.79113 -13.50636 -13.40724 -13.24008 -13.20648 -13.07472 -13.01108 -12.96185 -12.94971 -12.73996 -12.48121 -12.33062 -12.26735 -12.11492 -11.87520 -11.70179 -11.60664 -11.50005 -11.06631 -10.68857 -10.64549 -10.46008 -10.38850 -10.11479 -9.92542 -9.25129 0.21323 0.39353 1.16438 1.47785 1.54758 1.61511 1.87809 1.93042 2.01438 2.06668 2.08267 2.44565 2.67495 2.77694 3.51877 3.65195 3.69927 3.84729 3.88197 3.97086 4.08143 4.12291 4.13957 4.21731 4.25442 4.35727 4.38415 4.41615 4.47469 4.56322 4.64248 4.69424 4.70938 4.79710 4.82550 4.84043 4.88652 4.90038 4.91130 4.91569 4.98963 5.01042 5.08974 5.15900 5.27613 5.28036 5.36929 5.42070 5.43913 5.53174 5.61763 5.69225 5.71109 5.73534 6.43099 6.55605 6.68545 7.26266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.087 2.913 3 C -0.475 4.475 4 C -0.465 4.465 5 C -0.424 4.424 6 C -0.117 4.117 7 C 0.115 3.885 8 N -0.720 5.720 9 C 0.503 3.497 10 O -0.595 6.595 11 C -0.127 4.127 12 C -0.102 4.102 13 C 0.058 3.942 14 O -0.338 6.338 15 C 0.117 3.883 16 C -0.206 4.206 17 C -0.074 4.074 18 C -0.174 4.174 19 C -0.084 4.084 20 C -0.089 4.089 21 O -0.554 6.554 22 Si 0.995 3.005 23 H -0.255 1.255 24 H -0.277 1.277 25 H -0.246 1.246 26 C -0.147 4.147 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.419 0.581 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.154 0.846 50 H 0.156 0.844 51 H 0.136 0.864 52 H 0.119 0.881 53 H 0.389 0.611 54 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 -1.398 -8.249 10.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.278 2.722 3 C -0.580 4.580 4 C -0.571 4.571 5 C -0.508 4.508 6 C -0.154 4.154 7 C -0.009 4.009 8 N -0.373 5.373 9 C 0.291 3.709 10 O -0.476 6.476 11 C -0.166 4.166 12 C -0.141 4.141 13 C -0.016 4.016 14 O -0.252 6.252 15 C 0.072 3.928 16 C -0.224 4.224 17 C -0.092 4.092 18 C -0.192 4.192 19 C -0.085 4.085 20 C -0.198 4.198 21 O -0.361 6.361 22 Si 0.818 3.182 23 H -0.179 1.179 24 H -0.202 1.202 25 H -0.170 1.170 26 C -0.166 4.166 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.257 0.743 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.172 0.828 50 H 0.173 0.827 51 H 0.153 0.847 52 H 0.137 0.863 53 H 0.238 0.762 54 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.655 -1.732 -7.416 8.926 hybrid contribution -0.258 0.758 -0.167 0.818 sum -4.913 -0.975 -7.583 9.088 Atomic orbital electron populations 1.26328 1.21953 1.04704 1.04119 0.78014 0.65243 0.64316 0.64655 1.26436 1.06251 1.21198 1.04117 1.26330 1.06179 1.08641 1.15957 1.26327 1.06099 1.01670 1.16736 1.21448 1.02149 0.95322 0.96509 1.21493 0.98578 0.81266 0.99538 1.46004 1.53608 1.12228 1.25427 1.21272 0.79403 0.89053 0.81153 1.90734 1.40254 1.78634 1.37943 1.21535 1.04571 0.90268 1.00232 1.21154 1.01522 0.92844 0.98536 1.22991 1.00022 0.92080 0.86523 1.86057 1.71569 1.21982 1.45614 1.19220 0.94915 0.83625 0.95080 1.21586 1.02533 0.97258 1.01049 1.21262 0.97534 0.93253 0.97124 1.21210 1.00986 1.00936 0.96019 1.20214 0.97431 0.93850 0.96966 1.25219 1.03132 1.07864 0.83607 1.86496 1.26641 1.84720 1.38269 0.85041 0.80632 0.72985 0.79510 1.17862 1.20249 1.16982 1.20353 1.04309 0.94314 0.97612 0.91612 0.91631 0.90606 0.91626 0.91562 0.91627 0.90605 0.91635 0.91612 0.90675 0.90678 0.89557 0.89549 0.93290 0.93294 0.74321 0.85336 0.85333 0.92274 0.92254 0.89778 0.89793 0.82845 0.82671 0.84687 0.86281 0.76187 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.70 8.65 113.37 0.98 3.68 16 2 Si 1.09 -8.46 12.19 68.60 0.84 -7.63 16 3 C -0.47 1.58 8.65 113.37 0.98 2.57 16 4 C -0.46 2.70 8.65 113.37 0.98 3.68 16 5 C -0.42 2.44 4.45 71.99 0.32 2.76 16 6 C -0.12 0.78 4.70 30.60 0.14 0.92 16 7 C 0.12 -0.05 5.67 86.38 0.49 0.44 16 8 N -0.72 2.23 5.56 -463.06 -2.57 -0.34 16 9 C 0.50 1.28 7.83 87.66 0.69 1.97 16 10 O -0.59 -8.42 15.98 -3.05 -0.05 -8.47 16 11 C -0.13 0.75 5.70 29.84 0.17 0.92 16 12 C -0.10 -0.07 4.87 30.59 0.15 0.07 16 13 C 0.06 -0.12 4.74 71.98 0.34 0.22 16 14 O -0.34 -2.14 10.14 -92.43 -0.94 -3.07 16 15 C 0.12 0.61 6.69 22.50 0.15 0.76 16 16 C -0.21 0.00 9.04 22.36 0.20 0.20 16 17 C -0.07 0.10 10.04 22.25 0.22 0.32 16 18 C -0.17 -0.09 8.67 22.28 0.19 0.11 16 19 C -0.08 -0.26 5.35 -19.88 -0.11 -0.36 16 20 C -0.09 -0.10 2.80 71.23 0.20 0.10 16 21 O -0.55 -1.65 12.83 -148.98 -1.91 -3.56 16 22 Si 1.00 -0.95 25.14 68.60 1.72 0.77 16 23 H -0.25 0.08 7.11 99.48 0.71 0.79 16 24 H -0.28 -0.74 7.11 99.48 0.71 -0.04 16 25 H -0.25 0.48 7.04 99.48 0.70 1.18 16 26 C -0.15 -0.94 9.62 22.37 0.22 -0.73 16 27 H 0.06 -0.32 7.96 -2.39 -0.02 -0.34 16 28 H 0.06 -0.31 7.96 -2.39 -0.02 -0.33 16 29 H 0.07 -0.54 7.79 -2.39 -0.02 -0.56 16 30 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 31 H 0.07 -0.19 7.96 -2.39 -0.02 -0.20 16 32 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 33 H 0.07 -0.54 7.79 -2.39 -0.02 -0.56 16 34 H 0.06 -0.31 7.96 -2.38 -0.02 -0.33 16 35 H 0.06 -0.32 7.96 -2.39 -0.02 -0.34 16 36 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 37 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 38 H 0.09 -0.81 7.79 -2.39 -0.02 -0.83 16 39 H 0.09 -0.81 7.79 -2.39 -0.02 -0.83 16 40 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 42 H 0.42 -4.55 8.47 -92.71 -0.79 -5.33 16 43 H 0.13 -1.50 8.14 -2.39 -0.02 -1.52 16 44 H 0.13 -1.50 8.14 -2.39 -0.02 -1.52 16 45 H 0.06 0.32 8.10 -2.39 -0.02 0.30 16 46 H 0.06 0.32 8.10 -2.39 -0.02 0.30 16 47 H 0.08 -0.51 7.68 -2.39 -0.02 -0.53 16 48 H 0.08 -0.51 7.65 -2.39 -0.02 -0.53 16 49 H 0.15 -0.87 6.30 -2.91 -0.02 -0.89 16 50 H 0.16 -1.09 8.06 -2.91 -0.02 -1.11 16 51 H 0.14 -0.38 4.86 -2.91 -0.01 -0.39 16 52 H 0.12 0.04 7.96 -2.38 -0.02 0.02 16 53 H 0.39 -1.50 8.70 -74.06 -0.64 -2.15 16 54 H 0.12 0.97 8.06 -2.91 -0.02 0.95 16 Total: 0.00 -23.87 438.55 3.60 -20.27 By element: Atomic # 1 Polarization: -15.80 SS G_CDS: 0.19 Total: -15.62 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 6.32 Total: 17.65 kcal Atomic # 7 Polarization: 2.23 SS G_CDS: -2.57 Total: -0.34 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -2.90 Total: -15.10 kcal Atomic # 14 Polarization: -9.42 SS G_CDS: 2.56 Total: -6.85 kcal Total: -23.87 3.60 -20.27 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_4549616.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.488 kcal (2) G-P(sol) polarization free energy of solvation -23.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds