Wall clock time and date at job start Mon Mar 8 2021 04:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35992 * 116.99565 * 2 1 4 4 C 1.38670 * 119.99783 * 0.02562 * 3 2 1 5 5 C 1.38154 * 119.99915 * 179.97438 * 4 3 2 6 6 C 1.38681 * 119.99691 * 0.02562 * 5 4 3 7 7 O 1.35986 * 119.99886 * 180.02562 * 6 5 4 8 8 C 1.42905 * 117.00016 * 0.02562 * 7 6 5 9 9 C 1.50700 * 109.47021 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99684 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99976 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99835 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47082 * 180.02562 * 12 11 9 14 14 C 1.52993 * 109.47350 * 179.97438 * 13 12 11 15 15 Si 1.86306 * 109.47220 * 179.97438 * 14 13 12 16 16 C 1.86301 * 109.46894 * 59.99972 * 15 14 13 17 17 C 1.86305 * 109.46939 * 179.97438 * 15 14 13 18 18 C 1.86298 * 109.47113 * 299.99763 * 15 14 13 19 19 C 1.38712 * 120.00083 * 0.02562 * 6 5 4 20 20 C 1.50701 * 119.99957 * 179.97438 * 19 6 5 21 21 O 1.42895 * 109.47079 * 75.00898 * 20 19 6 22 22 Si 1.86301 * 109.47149 * 195.00393 * 20 19 6 23 23 H 1.48506 * 109.47302 * 59.99966 * 22 20 19 24 24 H 1.48503 * 109.47334 * 300.00099 * 22 20 19 25 25 H 1.48500 * 109.47376 * 180.02562 * 22 20 19 26 26 C 1.38110 * 119.99936 * 0.24058 * 19 6 5 27 27 H 1.08997 * 109.46779 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46818 * 299.99390 * 1 2 3 29 29 H 1.08993 * 109.47435 * 59.99660 * 1 2 3 30 30 H 1.07996 * 120.00591 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.00545 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.47003 * 300.00171 * 8 7 6 33 33 H 1.09004 * 109.46705 * 60.00512 * 8 7 6 34 34 H 0.96998 * 119.99988 * 0.02562 * 11 9 8 35 35 H 1.08999 * 109.47039 * 299.99536 * 12 11 9 36 36 H 1.08998 * 109.47755 * 60.00032 * 12 11 9 37 37 H 1.09003 * 109.46968 * 299.99728 * 13 12 11 38 38 H 1.09004 * 109.47479 * 59.99137 * 13 12 11 39 39 H 1.08999 * 109.46971 * 299.99314 * 14 13 12 40 40 H 1.08998 * 109.47555 * 59.99647 * 14 13 12 41 41 H 1.08999 * 109.47540 * 60.00159 * 16 15 14 42 42 H 1.08998 * 109.46799 * 180.02562 * 16 15 14 43 43 H 1.09003 * 109.47272 * 299.99822 * 16 15 14 44 44 H 1.08993 * 109.47129 * 60.00056 * 17 15 14 45 45 H 1.08998 * 109.46984 * 180.02562 * 17 15 14 46 46 H 1.09000 * 109.46747 * 299.99646 * 17 15 14 47 47 H 1.09003 * 109.47026 * 60.00195 * 18 15 14 48 48 H 1.08998 * 109.46852 * 179.97438 * 18 15 14 49 49 H 1.08999 * 109.46893 * 300.00394 * 18 15 14 50 50 H 1.09001 * 109.47380 * 315.00295 * 20 19 6 51 51 H 0.96708 * 113.99763 * 299.99687 * 21 20 19 52 52 H 1.08008 * 119.99731 * 179.72155 * 26 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2909 2.3746 0.0005 5 6 1.9180 3.6057 0.0011 6 6 3.3029 3.6783 0.0005 7 8 3.9202 4.8900 0.0016 8 6 3.0802 6.0461 0.0038 9 6 3.9343 7.2876 0.0053 10 8 5.1433 7.1918 0.0041 11 7 3.3546 8.5044 0.0070 12 6 4.1850 9.7113 0.0079 13 6 3.2856 10.9491 0.0104 14 6 4.1528 12.2095 0.0120 15 14 3.0576 13.7167 0.0142 16 6 1.9823 13.7007 1.5355 17 6 4.1136 15.2516 0.0170 18 6 1.9819 13.7050 -1.5068 19 6 4.0585 2.5150 -0.0011 20 6 5.5634 2.5940 -0.0022 21 8 6.0219 2.9658 1.2991 22 14 6.2721 0.9327 -0.4590 23 1 5.7957 0.5460 -1.8113 24 1 5.8305 -0.0829 0.5304 25 1 7.7551 1.0103 -0.4595 26 6 3.4315 1.2844 -0.0072 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.2125 2.3181 0.0005 31 1 1.3298 4.5114 0.0011 32 1 2.4502 6.0391 -0.8856 33 1 2.4517 6.0368 0.8944 34 1 2.3877 8.5809 0.0076 35 1 4.8146 9.7184 0.8976 36 1 4.8138 9.7205 -0.8823 37 1 2.6556 10.9422 -0.8791 38 1 2.6570 10.9397 0.9009 39 1 4.7824 12.2162 0.9017 40 1 4.7816 12.2192 -0.8782 41 1 2.6117 13.7076 2.4255 42 1 1.3413 14.5823 1.5366 43 1 1.3645 12.8027 1.5344 44 1 4.7430 15.2612 -0.8728 45 1 3.4729 16.1334 0.0188 46 1 4.7426 15.2582 0.9072 47 1 1.3641 12.8070 -1.5079 48 1 1.3409 14.5866 -1.5052 49 1 2.6111 13.7143 -2.3968 50 1 5.8876 3.3394 -0.7285 51 1 5.6914 3.8225 1.6026 52 1 4.0199 0.3787 -0.0130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_4974302.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:14:29 Heat of formation + Delta-G solvation = -167.278723 kcal Electronic energy + Delta-G solvation = -28892.193064 eV Core-core repulsion = 24787.864299 eV Total energy + Delta-G solvation = -4104.328765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.182 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.82044 -40.84220 -39.83814 -38.15504 -36.99113 -36.69769 -33.65212 -32.82744 -31.07986 -29.74148 -29.26839 -28.28897 -28.25147 -28.01371 -26.60004 -26.37760 -23.70628 -22.47485 -22.41132 -21.47862 -19.55523 -18.82095 -18.48602 -18.04801 -17.54076 -17.42367 -16.89713 -16.69211 -16.42341 -16.24584 -15.66488 -15.59450 -15.41392 -15.18676 -14.82299 -14.30257 -14.19703 -14.08366 -14.02361 -13.97783 -13.75994 -13.60819 -13.52539 -13.34248 -13.28829 -13.06527 -13.01551 -12.97895 -12.94945 -12.50792 -12.47010 -12.28977 -12.26510 -11.83049 -11.68447 -11.45081 -11.25757 -11.11161 -11.03633 -10.67794 -10.63181 -10.38724 -10.17947 -10.11247 -8.83326 0.04660 0.32116 1.14941 1.44030 1.47126 1.48688 1.49830 1.90591 2.00612 2.04807 2.09858 2.32727 2.53456 2.63196 2.79345 3.50119 3.57604 3.73061 3.87845 3.98005 4.07777 4.09094 4.13345 4.16557 4.18344 4.22019 4.33883 4.39251 4.41393 4.42954 4.68065 4.71201 4.75965 4.80188 4.83680 4.84323 4.89636 4.91094 4.92326 4.92420 4.97655 5.09600 5.11455 5.18954 5.29489 5.33604 5.40603 5.53918 5.62981 5.70589 5.72417 6.14325 6.40491 6.49556 6.56629 7.15564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.089 3.911 4 C -0.160 4.160 5 C -0.157 4.157 6 C 0.096 3.904 7 O -0.313 6.313 8 C 0.037 3.963 9 C 0.509 3.491 10 O -0.574 6.574 11 N -0.711 5.711 12 C 0.118 3.882 13 C -0.117 4.117 14 C -0.424 4.424 15 Si 1.091 2.909 16 C -0.466 4.466 17 C -0.477 4.477 18 C -0.466 4.466 19 C -0.116 4.116 20 C -0.088 4.088 21 O -0.550 6.550 22 Si 1.035 2.965 23 H -0.239 1.239 24 H -0.261 1.261 25 H -0.271 1.271 26 C -0.137 4.137 27 H 0.113 0.887 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.163 0.837 31 H 0.171 0.829 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.421 0.579 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.078 0.922 51 H 0.375 0.625 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.367 4.403 -1.078 11.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.043 3.957 4 C -0.179 4.179 5 C -0.175 4.175 6 C 0.051 3.949 7 O -0.226 6.226 8 C -0.040 4.040 9 C 0.295 3.705 10 O -0.452 6.452 11 N -0.366 5.366 12 C -0.005 4.005 13 C -0.155 4.155 14 C -0.508 4.508 15 Si 1.282 2.718 16 C -0.572 4.572 17 C -0.582 4.582 18 C -0.572 4.572 19 C -0.117 4.117 20 C -0.196 4.196 21 O -0.356 6.356 22 Si 0.855 3.145 23 H -0.162 1.162 24 H -0.185 1.185 25 H -0.196 1.196 26 C -0.156 4.156 27 H 0.131 0.869 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.180 0.820 31 H 0.188 0.812 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.259 0.741 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.096 0.904 51 H 0.224 0.776 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.574 2.847 -1.347 9.134 hybrid contribution -0.880 1.349 0.244 1.629 sum -9.454 4.195 -1.103 10.402 Atomic orbital electron populations 1.23360 0.76240 1.05586 1.02504 1.86082 1.23587 1.26641 1.89034 1.18979 0.91851 0.85432 0.99389 1.21409 1.01578 0.90829 1.04045 1.21411 0.92125 0.99962 1.04024 1.18717 0.91602 0.84209 1.00374 1.86093 1.35427 1.11778 1.89334 1.22739 0.92617 0.81779 1.06910 1.20586 0.88349 0.85619 0.75978 1.90771 1.16807 1.87469 1.50178 1.45773 1.11709 1.04429 1.74673 1.21540 0.94190 0.83580 1.01231 1.21462 0.98032 0.91619 1.04378 1.26307 1.08766 1.10697 1.05039 0.77948 0.64611 0.63945 0.65319 1.26346 1.10251 1.04553 1.16065 1.26461 1.10332 1.17273 1.04091 1.26344 1.10252 1.04556 1.16055 1.19417 0.96403 0.90703 1.05218 1.25288 0.92266 1.13424 0.88607 1.86633 1.74151 1.42556 1.32278 0.84214 0.78213 0.72333 0.79711 1.16200 1.18549 1.19606 1.20280 0.92864 0.97261 1.05181 0.86867 0.91394 0.91242 0.82000 0.81160 0.85736 0.85622 0.74067 0.92909 0.92949 0.89396 0.89386 0.90573 0.90584 0.91625 0.91754 0.90538 0.91647 0.91671 0.91652 0.90535 0.91748 0.91621 0.90360 0.77614 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.34 -1.47 10.50 -93.46 -0.98 -2.45 16 3 C 0.09 0.40 6.69 22.49 0.15 0.55 16 4 C -0.16 0.20 9.03 22.35 0.20 0.41 16 5 C -0.16 0.39 9.03 22.36 0.20 0.59 16 6 C 0.10 0.32 6.62 22.49 0.15 0.46 16 7 O -0.31 -1.21 8.56 -74.35 -0.64 -1.84 16 8 C 0.04 -0.18 5.22 71.24 0.37 0.19 16 9 C 0.51 0.88 7.91 87.66 0.69 1.57 16 10 O -0.57 -7.83 16.50 16.00 0.26 -7.56 16 11 N -0.71 3.63 5.56 -463.07 -2.57 1.06 16 12 C 0.12 -0.28 5.67 86.38 0.49 0.21 16 13 C -0.12 0.99 4.70 30.59 0.14 1.14 16 14 C -0.42 3.02 4.45 71.98 0.32 3.34 16 15 Si 1.09 -9.54 12.19 68.60 0.84 -8.70 16 16 C -0.47 3.08 8.65 113.37 0.98 4.06 16 17 C -0.48 1.86 8.65 113.37 0.98 2.84 16 18 C -0.47 3.09 8.65 113.37 0.98 4.07 16 19 C -0.12 -0.79 5.28 -19.78 -0.10 -0.90 16 20 C -0.09 -0.70 2.33 71.24 0.17 -0.53 16 21 O -0.55 -5.62 12.65 -148.98 -1.89 -7.50 16 22 Si 1.03 6.77 25.73 68.60 1.77 8.54 16 23 H -0.24 -1.13 7.11 99.48 0.71 -0.42 16 24 H -0.26 -2.04 6.74 99.48 0.67 -1.37 16 25 H -0.27 -2.36 7.11 99.48 0.71 -1.65 16 26 C -0.14 -0.97 8.59 22.35 0.19 -0.78 16 27 H 0.11 -0.81 8.14 -2.39 -0.02 -0.83 16 28 H 0.07 -0.48 7.66 -2.39 -0.02 -0.50 16 29 H 0.07 -0.51 7.66 -2.39 -0.02 -0.53 16 30 H 0.16 -1.19 6.29 -2.91 -0.02 -1.21 16 31 H 0.17 -1.82 6.29 -2.91 -0.02 -1.84 16 32 H 0.13 -1.38 7.66 -2.39 -0.02 -1.40 16 33 H 0.13 -1.42 7.66 -2.38 -0.02 -1.44 16 34 H 0.42 -5.62 8.47 -92.71 -0.79 -6.41 16 35 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.09 -0.99 7.79 -2.39 -0.02 -1.01 16 38 H 0.09 -0.99 7.79 -2.38 -0.02 -1.01 16 39 H 0.08 -0.46 7.96 -2.39 -0.02 -0.48 16 40 H 0.08 -0.46 7.96 -2.39 -0.02 -0.48 16 41 H 0.06 -0.36 7.96 -2.39 -0.02 -0.38 16 42 H 0.06 -0.34 7.96 -2.39 -0.02 -0.36 16 43 H 0.08 -0.62 7.79 -2.39 -0.02 -0.64 16 44 H 0.06 -0.21 7.96 -2.39 -0.02 -0.23 16 45 H 0.06 -0.21 7.96 -2.39 -0.02 -0.23 16 46 H 0.06 -0.21 7.96 -2.39 -0.02 -0.23 16 47 H 0.08 -0.62 7.79 -2.39 -0.02 -0.64 16 48 H 0.06 -0.35 7.96 -2.39 -0.02 -0.36 16 49 H 0.06 -0.37 7.96 -2.39 -0.02 -0.39 16 50 H 0.08 0.60 7.82 -2.39 -0.02 0.58 16 51 H 0.38 2.68 8.60 -74.05 -0.64 2.05 16 52 H 0.13 0.93 4.88 -2.91 -0.01 0.92 16 Total: 0.00 -24.64 424.20 4.04 -20.60 By element: Atomic # 1 Polarization: -20.61 SS G_CDS: 0.22 Total: -20.39 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 7.03 Total: 18.26 kcal Atomic # 7 Polarization: 3.63 SS G_CDS: -2.57 Total: 1.06 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -3.24 Total: -19.36 kcal Atomic # 14 Polarization: -2.77 SS G_CDS: 2.60 Total: -0.16 kcal Total: -24.64 4.04 -20.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_4974302.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.675 kcal (2) G-P(sol) polarization free energy of solvation -24.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds