Wall clock time and date at job start Mon Mar 8 2021 04:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38519 * 120.06958 * 359.72831 * 3 2 1 5 5 C 1.38296 * 119.99696 * 179.74377 * 4 3 2 6 6 C 1.50701 * 119.92580 * 180.23141 * 5 4 3 7 7 O 1.42903 * 109.47261 * 300.27493 * 6 5 4 8 8 Si 1.86295 * 109.47147 * 180.27619 * 6 5 4 9 9 H 1.48505 * 109.47118 * 59.99881 * 8 6 5 10 10 H 1.48498 * 109.47234 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46989 * 300.00353 * 8 6 5 12 12 C 1.38203 * 120.14679 * 0.51103 * 5 4 3 13 13 C 1.38288 * 120.14554 * 359.76377 * 12 5 4 14 14 C 1.38522 * 119.99990 * 359.97438 * 13 12 5 15 15 O 1.35994 * 120.07549 * 179.97438 * 14 13 12 16 16 C 1.42901 * 116.99839 * 0.02908 * 15 14 13 17 17 C 1.50695 * 109.47370 * 179.97438 * 16 15 14 18 18 O 1.21285 * 119.99773 * 359.97438 * 17 16 15 19 19 N 1.34768 * 120.00497 * 179.97438 * 17 16 15 20 20 C 1.46497 * 120.00646 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47618 * 180.02562 * 20 19 17 22 22 C 1.53001 * 109.47296 * 179.97438 * 21 20 19 23 23 Si 1.86291 * 109.47176 * 180.02562 * 22 21 20 24 24 C 1.86303 * 109.47412 * 60.00000 * 23 22 21 25 25 C 1.86299 * 109.47460 * 180.02562 * 23 22 21 26 26 C 1.86307 * 109.47156 * 299.99998 * 23 22 21 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 30 30 H 1.08002 * 120.00791 * 359.97438 * 4 3 2 31 31 H 1.09002 * 109.47150 * 60.27802 * 6 5 4 32 32 H 0.96692 * 114.00195 * 300.00172 * 7 6 5 33 33 H 1.07996 * 119.92818 * 179.74666 * 12 5 4 34 34 H 1.07992 * 120.00165 * 179.97438 * 13 12 5 35 35 H 1.09003 * 109.46967 * 299.99497 * 16 15 14 36 36 H 1.08999 * 109.47403 * 59.99407 * 16 15 14 37 37 H 0.97006 * 120.00221 * 0.02562 * 19 17 16 38 38 H 1.09003 * 109.46836 * 300.00525 * 20 19 17 39 39 H 1.08999 * 109.47022 * 60.00121 * 20 19 17 40 40 H 1.08998 * 109.46886 * 300.00339 * 21 20 19 41 41 H 1.09003 * 109.46538 * 59.99829 * 21 20 19 42 42 H 1.09003 * 109.47099 * 300.00231 * 22 21 20 43 43 H 1.08999 * 109.47081 * 60.00024 * 22 21 20 44 44 H 1.09003 * 109.47014 * 59.99938 * 24 23 22 45 45 H 1.09003 * 109.47107 * 180.02562 * 24 23 22 46 46 H 1.09001 * 109.46660 * 300.00134 * 24 23 22 47 47 H 1.08999 * 109.47185 * 59.99525 * 25 23 22 48 48 H 1.08995 * 109.47634 * 180.02562 * 25 23 22 49 49 H 1.09003 * 109.46711 * 299.99905 * 25 23 22 50 50 H 1.08998 * 109.46923 * 60.00092 * 26 23 22 51 51 H 1.08991 * 109.47304 * 180.02562 * 26 23 22 52 52 H 1.08999 * 109.46933 * 300.00135 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2936 2.3743 -0.0057 5 6 1.9230 3.6057 -0.0003 6 6 1.1023 4.8696 -0.0012 7 8 0.2783 4.9017 -1.1683 8 14 2.2371 6.3470 -0.0016 9 1 3.0943 6.3125 -1.2138 10 1 1.4284 7.5925 -0.0019 11 1 3.0935 6.3137 1.2112 12 6 3.3031 3.6798 0.0001 13 6 4.0606 2.5229 0.0000 14 6 3.4364 1.2862 0.0001 15 8 4.1799 0.1475 -0.0005 16 6 5.6007 0.3005 -0.0005 17 6 6.2523 -1.0583 -0.0006 18 8 5.5673 -2.0593 -0.0001 19 7 7.5960 -1.1614 -0.0012 20 6 8.2294 -2.4824 -0.0018 21 6 9.7507 -2.3187 -0.0017 22 6 10.4122 -3.6983 -0.0017 23 14 12.2644 -3.4989 -0.0008 24 6 12.7872 -2.5596 1.5207 25 6 13.0699 -5.1788 -0.0016 26 6 12.7885 -2.5590 -1.5216 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2150 2.3193 -0.0105 31 1 0.4732 4.8950 0.8885 32 1 0.7723 4.8817 -1.9993 33 1 3.7909 4.6433 0.0001 34 1 5.1389 2.5835 -0.0001 35 1 5.9069 0.8506 -0.8904 36 1 5.9071 0.8499 0.8896 37 1 8.1439 -0.3609 -0.0012 38 1 7.9235 -3.0324 0.8882 39 1 7.9229 -3.0319 -0.8918 40 1 10.0569 -1.7685 -0.8914 41 1 10.0569 -1.7693 0.8885 42 1 10.1058 -4.2481 0.8883 43 1 10.1059 -4.2481 -0.8917 44 1 12.4806 -3.1096 2.4105 45 1 13.8710 -2.4426 1.5209 46 1 12.3160 -1.5767 1.5207 47 1 12.7639 -5.7280 -0.8920 48 1 14.1536 -5.0622 -0.0007 49 1 12.7633 -5.7291 0.8879 50 1 12.3173 -1.5761 -1.5216 51 1 13.8722 -2.4427 -1.5214 52 1 12.4826 -3.1085 -2.4118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_60476.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:19:11 Heat of formation + Delta-G solvation = -164.150188 kcal Electronic energy + Delta-G solvation = -28624.287872 eV Core-core repulsion = 24520.094771 eV Total energy + Delta-G solvation = -4104.193101 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.182 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.82436 -40.84420 -39.35589 -38.88018 -36.98714 -36.72375 -33.67582 -32.02493 -31.47226 -29.90153 -29.29997 -28.46294 -28.28946 -28.25298 -26.59202 -25.96836 -23.55508 -22.57422 -22.47286 -21.48728 -19.80925 -18.61643 -18.36736 -17.97417 -17.60048 -17.16026 -16.87968 -16.80426 -16.30722 -16.07701 -15.96925 -15.82948 -15.33881 -15.21449 -14.96008 -14.55603 -14.18521 -14.05498 -14.00562 -13.77633 -13.76544 -13.62672 -13.55806 -13.34265 -13.28958 -13.01553 -13.01023 -12.95140 -12.63382 -12.55651 -12.47602 -12.18443 -12.15518 -12.03158 -11.98628 -11.69630 -11.57354 -11.10554 -10.68112 -10.63408 -10.41389 -10.39540 -10.20801 -9.78770 -8.92493 0.15959 0.25486 1.21093 1.43923 1.48816 1.51553 1.56402 1.96003 1.99929 2.04635 2.09562 2.30902 2.54991 2.60159 2.78772 3.50193 3.54160 3.70844 3.85676 3.87498 4.02180 4.06543 4.14715 4.14786 4.16235 4.26496 4.33145 4.36803 4.38067 4.60424 4.65681 4.68201 4.69648 4.79000 4.83437 4.83743 4.89631 4.90838 4.92155 4.92278 4.99199 5.08425 5.09432 5.28321 5.31552 5.34957 5.53153 5.58055 5.62523 5.70311 5.72276 5.96077 6.41783 6.53972 6.71776 7.13697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.079 3.921 4 C -0.148 4.148 5 C -0.117 4.117 6 C -0.081 4.081 7 O -0.554 6.554 8 Si 0.987 3.013 9 H -0.246 1.246 10 H -0.279 1.279 11 H -0.251 1.251 12 C -0.124 4.124 13 C -0.160 4.160 14 C 0.083 3.917 15 O -0.315 6.315 16 C 0.035 3.965 17 C 0.508 3.492 18 O -0.578 6.578 19 N -0.710 5.710 20 C 0.117 3.883 21 C -0.117 4.117 22 C -0.425 4.425 23 Si 1.091 2.909 24 C -0.466 4.466 25 C -0.476 4.476 26 C -0.466 4.466 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.147 0.853 31 H 0.123 0.877 32 H 0.389 0.611 33 H 0.146 0.854 34 H 0.173 0.827 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.422 0.578 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.075 0.925 51 H 0.064 0.936 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.879 5.732 -0.142 8.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.033 3.967 4 C -0.167 4.167 5 C -0.118 4.118 6 C -0.191 4.191 7 O -0.361 6.361 8 Si 0.811 3.189 9 H -0.169 1.169 10 H -0.205 1.205 11 H -0.175 1.175 12 C -0.141 4.141 13 C -0.179 4.179 14 C 0.037 3.963 15 O -0.228 6.228 16 C -0.043 4.043 17 C 0.294 3.706 18 O -0.456 6.456 19 N -0.364 5.364 20 C -0.006 4.006 21 C -0.154 4.154 22 C -0.509 4.509 23 Si 1.281 2.719 24 C -0.572 4.572 25 C -0.581 4.581 26 C -0.572 4.572 27 H 0.128 0.872 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.165 0.835 31 H 0.140 0.860 32 H 0.238 0.762 33 H 0.164 0.836 34 H 0.190 0.810 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.261 0.739 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.095 0.905 51 H 0.083 0.917 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.484 5.320 0.298 7.646 hybrid contribution -0.017 -0.482 -0.331 0.585 sum 5.466 4.838 -0.033 7.299 Atomic orbital electron populations 1.23305 0.76681 1.05223 1.02267 1.86193 1.23130 1.26603 1.89047 1.18679 0.89801 0.85742 1.02459 1.21026 1.00736 0.90233 1.04662 1.20225 0.94164 0.95305 1.02122 1.25102 1.00667 1.01300 0.92024 1.86478 1.36557 1.96891 1.16196 0.85151 0.76976 0.75124 0.81648 1.16944 1.20479 1.17511 1.21010 0.92898 0.98936 1.01306 1.21329 1.02129 0.89449 1.04960 1.18592 0.88345 0.86415 1.02908 1.86226 1.18214 1.29069 1.89326 1.22776 0.79386 0.95138 1.06977 1.20625 0.83212 0.90851 0.75937 1.90769 1.64268 1.40333 1.50269 1.45758 1.05084 1.10951 1.74636 1.21562 0.94233 0.83646 1.01191 1.21465 0.91015 0.98496 1.04445 1.26330 1.20694 0.98846 1.05018 0.77954 0.63987 0.64530 0.65391 1.26341 1.05625 1.09198 1.16028 1.26451 1.07700 1.19848 1.04098 1.26339 1.05628 1.09206 1.16013 0.87171 0.91596 0.91567 0.83505 0.85969 0.76188 0.83618 0.80992 0.85486 0.85525 0.73950 0.93002 0.92985 0.89306 0.89322 0.90610 0.90602 0.91625 0.91682 0.90543 0.91638 0.91604 0.91649 0.90540 0.91687 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.81 113.37 1.11 1.16 16 2 O -0.34 -3.88 10.28 -79.61 -0.82 -4.69 16 3 C 0.08 0.67 6.70 22.57 0.15 0.83 16 4 C -0.15 -0.56 8.59 22.35 0.19 -0.37 16 5 C -0.12 -0.06 5.39 -19.86 -0.11 -0.17 16 6 C -0.08 0.17 2.82 71.24 0.20 0.37 16 7 O -0.55 0.23 12.76 -148.98 -1.90 -1.68 16 8 Si 0.99 -3.45 25.06 68.60 1.72 -1.73 16 9 H -0.25 1.06 7.11 99.48 0.71 1.76 16 10 H -0.28 -0.19 7.11 99.48 0.71 0.51 16 11 H -0.25 0.83 7.11 99.48 0.71 1.54 16 12 C -0.12 0.19 8.66 22.27 0.19 0.38 16 13 C -0.16 0.16 9.04 22.35 0.20 0.36 16 14 C 0.08 0.55 6.70 22.57 0.15 0.70 16 15 O -0.31 -3.11 9.46 -67.08 -0.63 -3.74 16 16 C 0.03 -0.04 5.22 71.23 0.37 0.34 16 17 C 0.51 2.72 7.91 87.66 0.69 3.41 16 18 O -0.58 -10.55 16.50 15.99 0.26 -10.28 16 19 N -0.71 1.95 5.56 -463.07 -2.57 -0.62 16 20 C 0.12 -0.06 5.67 86.38 0.49 0.43 16 21 C -0.12 0.84 4.70 30.60 0.14 0.99 16 22 C -0.42 2.61 4.45 71.98 0.32 2.93 16 23 Si 1.09 -8.83 12.19 68.60 0.84 -7.99 16 24 C -0.47 2.81 8.65 113.37 0.98 3.80 16 25 C -0.48 1.64 8.65 113.37 0.98 2.62 16 26 C -0.47 2.82 8.65 113.37 0.98 3.80 16 27 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 28 H 0.07 0.01 7.65 -2.39 -0.02 -0.01 16 29 H 0.07 -0.01 7.68 -2.38 -0.02 -0.03 16 30 H 0.15 0.24 6.30 -2.91 -0.02 0.23 16 31 H 0.12 -0.40 7.96 -2.39 -0.02 -0.42 16 32 H 0.39 -2.60 8.70 -74.06 -0.64 -3.24 16 33 H 0.15 -0.87 4.86 -2.91 -0.01 -0.89 16 34 H 0.17 -1.55 6.30 -2.91 -0.02 -1.57 16 35 H 0.13 -1.05 7.66 -2.39 -0.02 -1.07 16 36 H 0.13 -1.04 7.66 -2.39 -0.02 -1.05 16 37 H 0.42 -4.85 8.47 -92.70 -0.79 -5.64 16 38 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.09 -0.91 7.79 -2.39 -0.02 -0.92 16 41 H 0.09 -0.90 7.79 -2.39 -0.02 -0.92 16 42 H 0.08 -0.38 7.96 -2.39 -0.02 -0.40 16 43 H 0.08 -0.39 7.96 -2.39 -0.02 -0.40 16 44 H 0.06 -0.33 7.96 -2.39 -0.02 -0.35 16 45 H 0.06 -0.32 7.96 -2.39 -0.02 -0.34 16 46 H 0.08 -0.57 7.79 -2.39 -0.02 -0.59 16 47 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 48 H 0.06 -0.19 7.96 -2.39 -0.02 -0.21 16 49 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 50 H 0.08 -0.57 7.79 -2.39 -0.02 -0.59 16 51 H 0.06 -0.32 7.96 -2.39 -0.02 -0.34 16 52 H 0.06 -0.33 7.96 -2.39 -0.02 -0.35 16 Total: 0.00 -28.79 425.27 4.20 -24.59 By element: Atomic # 1 Polarization: -15.67 SS G_CDS: 0.24 Total: -15.42 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 7.06 Total: 21.58 kcal Atomic # 7 Polarization: 1.95 SS G_CDS: -2.57 Total: -0.62 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -3.09 Total: -20.39 kcal Atomic # 14 Polarization: -12.28 SS G_CDS: 2.56 Total: -9.72 kcal Total: -28.79 4.20 -24.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_60476.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.561 kcal (2) G-P(sol) polarization free energy of solvation -28.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds