Wall clock time and date at job start Mon Mar 8 2021 05:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35657 * 116.99980 * 2 1 4 4 C 1.38403 * 120.12216 * 0.02562 * 3 2 1 5 5 C 1.38718 * 120.03480 * 180.02562 * 4 3 2 6 6 O 1.35719 * 119.86401 * 179.97438 * 5 4 3 7 7 C 1.42900 * 116.99907 * 359.97438 * 6 5 4 8 8 C 1.39142 * 120.27413 * 359.97438 * 5 4 3 9 9 C 1.50700 * 119.88055 * 179.97438 * 8 5 4 10 10 O 1.42898 * 109.47496 * 74.99788 * 9 8 5 11 11 Si 1.86300 * 109.47267 * 195.00089 * 9 8 5 12 12 C 1.37590 * 120.24056 * 359.68137 * 8 5 4 13 13 C 1.39821 * 119.95767 * 0.61631 * 12 8 5 14 14 C 1.47301 * 120.13128 * 179.67279 * 13 12 8 15 15 O 1.21615 * 119.99818 * 179.72949 * 14 13 12 16 16 N 1.34784 * 119.99936 * 359.73299 * 14 13 12 17 17 C 1.46494 * 119.99635 * 179.97438 * 16 14 13 18 18 H 1.09005 * 112.85456 * 336.19315 * 17 16 14 19 19 C 1.53780 * 113.61660 * 107.50699 * 17 16 14 20 20 C 1.53774 * 87.08267 * 89.11129 * 19 17 16 21 21 H 1.09004 * 113.69401 * 270.87425 * 20 19 17 22 22 C 1.50705 * 113.61662 * 139.98347 * 20 19 17 23 23 C 1.38236 * 119.99419 * 322.23282 * 22 20 19 24 24 C 1.38240 * 119.99450 * 179.80570 * 23 22 20 25 25 C 1.38228 * 120.00199 * 0.42011 * 24 23 22 26 26 C 1.50705 * 120.00277 * 179.78760 * 25 24 23 27 27 F 1.39891 * 109.47113 * 270.02392 * 26 25 24 28 28 F 1.39904 * 109.46873 * 30.02278 * 26 25 24 29 29 F 1.39893 * 109.47169 * 150.01757 * 26 25 24 30 30 C 1.38235 * 120.00279 * 359.80869 * 25 24 23 31 31 C 1.38225 * 120.00326 * 142.49808 * 22 20 19 32 32 C 1.53782 * 87.08386 * 25.43475 * 20 19 17 33 33 H 1.09006 * 109.47087 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47338 * 300.00162 * 1 2 3 35 35 H 1.08994 * 109.47146 * 60.00399 * 1 2 3 36 36 H 1.08004 * 119.98008 * 359.97438 * 4 3 2 37 37 H 1.08999 * 109.47151 * 300.00176 * 7 6 5 38 38 H 1.09005 * 109.47091 * 60.00199 * 7 6 5 39 39 H 1.09001 * 109.47217 * 180.02562 * 7 6 5 40 40 H 1.09006 * 109.47051 * 315.00299 * 9 8 5 41 41 H 0.96701 * 114.00172 * 180.02562 * 10 9 8 42 42 H 1.48503 * 110.00034 * 300.00102 * 11 9 8 43 43 H 1.48502 * 109.99720 * 61.31864 * 11 9 8 44 44 H 1.07999 * 120.01908 * 180.30003 * 12 8 5 45 45 H 0.96995 * 120.00015 * 359.72314 * 16 14 13 46 46 H 1.08997 * 113.61467 * 203.66565 * 19 17 16 47 47 H 1.09000 * 113.60965 * 334.56513 * 19 17 16 48 48 H 1.07996 * 120.00700 * 359.97438 * 23 22 20 49 49 H 1.08006 * 119.99473 * 180.20496 * 24 23 22 50 50 H 1.07997 * 120.00751 * 179.97438 * 30 25 24 51 51 H 1.08005 * 120.00160 * 359.97438 * 31 22 20 52 52 H 1.09000 * 113.61415 * 220.01821 * 32 20 19 53 53 H 1.09000 * 113.68771 * 89.11987 * 32 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2935 2.3711 0.0005 5 6 1.9251 3.6061 0.0000 6 8 1.1850 4.7437 0.0000 7 6 -0.2360 4.5931 0.0000 8 6 3.3144 3.6834 -0.0005 9 6 3.9914 5.0298 -0.0017 10 8 3.8943 5.6130 1.2992 11 14 5.7860 4.8222 -0.4568 12 6 4.0724 2.5352 0.0061 13 6 3.4461 1.2851 0.0003 14 6 4.2538 0.0533 0.0001 15 8 3.7065 -1.0327 0.0001 16 7 5.5995 0.1299 0.0000 17 6 6.4028 -1.0952 0.0003 18 1 5.8664 -1.9530 0.4061 19 6 7.0950 -1.3784 -1.3434 20 6 8.2748 -0.5410 -0.8225 21 1 8.1903 0.5223 -1.0472 22 6 9.6236 -1.1094 -1.1815 23 6 9.8215 -2.4775 -1.1729 24 6 11.0575 -2.9992 -1.5060 25 6 12.0980 -2.1524 -1.8393 26 6 13.4469 -2.7209 -2.1978 27 9 14.2246 -2.8414 -1.0412 28 9 13.2814 -3.9813 -2.7819 29 9 14.0868 -1.8678 -3.1033 30 6 11.9015 -0.7841 -1.8433 31 6 10.6643 -0.2627 -1.5139 32 6 7.8085 -0.9098 0.5957 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8899 35 1 -0.3633 0.5137 -0.8900 36 1 0.2148 2.3165 0.0005 37 1 -0.5432 4.0438 -0.8900 38 1 -0.5432 4.0438 0.8900 39 1 -0.7057 5.5767 -0.0005 40 1 3.5051 5.6804 -0.7287 41 1 4.3094 6.4834 1.3721 42 1 6.4603 3.9372 0.5267 43 1 5.9006 4.2461 -1.8207 44 1 5.1504 2.5994 0.0105 45 1 6.0360 0.9961 -0.0040 46 1 7.3392 -2.4296 -1.4957 47 1 6.5871 -0.9325 -2.1986 48 1 9.0097 -3.1390 -0.9085 49 1 11.2112 -4.0683 -1.5025 50 1 12.7145 -0.1225 -2.1033 51 1 10.5108 0.8064 -1.5169 52 1 7.8768 -0.0858 1.3059 53 1 8.2473 -1.8328 0.9748 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705038_12297780.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:09:17 Heat of formation + Delta-G solvation = -192.923856 kcal Electronic energy + Delta-G solvation = -42773.665757 eV Core-core repulsion = 36743.401410 eV Total energy + Delta-G solvation = -6030.264348 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 438.153 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -51.24012 -48.76345 -48.71492 -42.25229 -41.54867 -40.50914 -39.99512 -38.91235 -38.35981 -37.07153 -34.84898 -32.92260 -32.43184 -32.13779 -31.58297 -29.04478 -28.35725 -27.80802 -26.77754 -26.10472 -25.43841 -24.59676 -24.00125 -23.01927 -22.34218 -21.68905 -20.36767 -20.01129 -19.60025 -19.53647 -19.40521 -18.84019 -18.37293 -18.17689 -17.54066 -17.20516 -17.13437 -16.66930 -16.58372 -16.47083 -16.39207 -15.98754 -15.85390 -15.82902 -15.67289 -15.55956 -15.42167 -15.28890 -15.17275 -14.96586 -14.87737 -14.79245 -14.56166 -14.41674 -14.36040 -14.20385 -14.08462 -13.92774 -13.81540 -13.53320 -13.48417 -13.28270 -12.81226 -12.76786 -12.60669 -12.57726 -12.41747 -12.17726 -11.97057 -11.91800 -11.85052 -11.74284 -11.31067 -11.08117 -10.24441 -10.21189 -10.08306 -10.03486 -9.96861 -9.30068 -4.91111 -0.40051 -0.15962 -0.04774 0.24911 1.31180 1.57661 1.60789 1.69929 1.93315 1.94053 2.02053 2.08762 2.37958 2.45787 2.67426 2.95732 3.24942 3.34223 3.35254 3.41892 3.56012 3.57803 3.63159 3.65290 3.78546 3.86201 3.89432 3.93618 3.95291 4.08566 4.12400 4.15835 4.22669 4.23264 4.27288 4.28303 4.35582 4.40420 4.55665 4.59490 4.64008 4.64332 4.65451 4.71403 4.75618 4.80447 4.84283 4.94777 4.95265 4.97000 5.06517 5.15915 5.16038 5.16913 5.41869 5.56184 5.74391 5.94664 6.18908 6.35305 6.96855 7.08491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.303 6.303 3 C 0.219 3.781 4 C -0.309 4.309 5 C 0.217 3.783 6 O -0.307 6.307 7 C 0.010 3.990 8 C -0.169 4.169 9 C -0.070 4.070 10 O -0.563 6.563 11 Si 0.761 3.239 12 C -0.013 4.013 13 C -0.232 4.232 14 C 0.566 3.434 15 O -0.557 6.557 16 N -0.706 5.706 17 C 0.113 3.887 18 H 0.091 0.909 19 C -0.141 4.141 20 C -0.072 4.072 21 H 0.112 0.888 22 C -0.039 4.039 23 C -0.120 4.120 24 C -0.076 4.076 25 C -0.202 4.202 26 C 0.507 3.493 27 F -0.184 7.184 28 F -0.182 7.182 29 F -0.182 7.182 30 C -0.075 4.075 31 C -0.118 4.118 32 C -0.124 4.124 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.169 0.831 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.400 0.600 42 H -0.268 1.268 43 H -0.279 1.279 44 H 0.146 0.854 45 H 0.405 0.595 46 H 0.106 0.894 47 H 0.067 0.933 48 H 0.151 0.849 49 H 0.142 0.858 50 H 0.144 0.856 51 H 0.155 0.845 52 H 0.086 0.914 53 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.601 8.402 0.135 9.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.214 6.214 3 C 0.170 3.830 4 C -0.329 4.329 5 C 0.169 3.831 6 O -0.218 6.218 7 C -0.084 4.084 8 C -0.170 4.170 9 C -0.179 4.179 10 O -0.373 6.373 11 Si 0.664 3.336 12 C -0.031 4.031 13 C -0.236 4.236 14 C 0.355 3.645 15 O -0.436 6.436 16 N -0.358 5.358 17 C 0.008 3.992 18 H 0.109 0.891 19 C -0.180 4.180 20 C -0.090 4.090 21 H 0.130 0.870 22 C -0.039 4.039 23 C -0.138 4.138 24 C -0.094 4.094 25 C -0.203 4.203 26 C 0.453 3.547 27 F -0.165 7.165 28 F -0.164 7.164 29 F -0.163 7.163 30 C -0.093 4.093 31 C -0.136 4.136 32 C -0.162 4.162 33 H 0.134 0.866 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.186 0.814 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.143 0.857 40 H 0.098 0.902 41 H 0.251 0.749 42 H -0.194 1.194 43 H -0.205 1.205 44 H 0.163 0.837 45 H 0.242 0.758 46 H 0.124 0.876 47 H 0.085 0.915 48 H 0.169 0.831 49 H 0.160 0.840 50 H 0.162 0.838 51 H 0.173 0.827 52 H 0.105 0.895 53 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.534 6.501 0.033 7.400 hybrid contribution -0.575 -0.219 -0.184 0.642 sum -4.109 6.282 -0.151 7.508 Atomic orbital electron populations 1.23514 0.76256 1.05975 1.02776 1.86360 1.23444 1.25604 1.85946 1.18917 0.90819 0.84969 0.88315 1.21479 1.02236 0.90612 1.18545 1.18871 0.90705 0.85235 0.88304 1.86123 1.21184 1.28185 1.86310 1.23521 0.76025 1.06218 1.02600 1.18834 0.90771 0.95421 1.12011 1.24721 1.11964 0.92078 0.89136 1.86462 1.82761 1.39134 1.28905 0.94133 0.74735 0.87892 0.76881 1.20848 0.99380 0.89871 0.93007 1.19135 0.91245 0.93590 1.19659 1.17996 0.82447 0.88336 0.75679 1.90809 1.72180 1.29953 1.50625 1.45513 1.05073 1.09825 1.75420 1.21921 0.91647 0.87655 0.98017 0.89107 1.23579 0.95505 1.01758 0.97114 1.21688 0.89809 1.00598 0.96906 0.86990 1.20077 0.95253 0.93510 0.95023 1.21233 0.96994 0.95374 1.00152 1.21120 0.92185 1.00476 0.95613 1.20036 0.92409 0.96454 1.11388 1.18499 0.86332 0.75577 0.74317 1.93217 1.77598 1.95882 1.49798 1.93185 1.95645 1.42776 1.84781 1.93181 1.84077 1.70579 1.68461 1.21154 0.99038 0.92956 0.96178 1.21332 0.91498 1.01473 0.99294 1.23412 0.92791 1.04219 0.95786 0.86633 0.90985 0.90810 0.81355 0.91063 0.91491 0.85675 0.90156 0.74915 1.19428 1.20494 0.83654 0.75835 0.87604 0.91450 0.83125 0.83983 0.83780 0.82730 0.89542 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.11 16 2 O -0.30 -2.94 8.56 -68.77 -0.59 -3.53 16 3 C 0.22 1.85 6.70 22.82 0.15 2.00 16 4 C -0.31 -1.10 8.01 22.42 0.18 -0.92 16 5 C 0.22 1.01 6.67 22.60 0.15 1.16 16 6 O -0.31 -0.71 9.80 -90.41 -0.89 -1.59 16 7 C 0.01 -0.06 9.80 113.37 1.11 1.06 16 8 C -0.17 -0.78 5.30 -19.80 -0.10 -0.89 16 9 C -0.07 0.05 2.36 71.24 0.17 0.22 16 10 O -0.56 0.11 12.86 -148.98 -1.92 -1.80 16 11 Si 0.76 -4.09 30.20 68.60 2.07 -2.02 16 12 C -0.01 -0.06 8.14 22.50 0.18 0.12 16 13 C -0.23 -2.02 5.89 -20.00 -0.12 -2.14 16 14 C 0.57 5.93 7.76 86.63 0.67 6.61 16 15 O -0.56 -9.96 14.75 16.88 0.25 -9.71 16 16 N -0.71 -2.12 5.21 -443.41 -2.31 -4.43 16 17 C 0.11 0.07 4.32 45.52 0.20 0.26 16 18 H 0.09 0.43 7.46 -2.38 -0.02 0.41 16 19 C -0.14 0.28 7.25 31.12 0.23 0.50 16 20 C -0.07 0.35 3.86 -11.01 -0.04 0.31 16 21 H 0.11 -0.79 8.09 -2.38 -0.02 -0.81 16 22 C -0.04 0.12 5.29 -19.87 -0.11 0.01 16 23 C -0.12 0.30 8.60 22.27 0.19 0.49 16 24 C -0.08 0.00 9.40 22.27 0.21 0.20 16 25 C -0.20 -0.42 5.45 -19.87 -0.11 -0.53 16 26 C 0.51 2.35 3.36 71.24 0.24 2.59 16 27 F -0.18 -1.18 17.30 44.97 0.78 -0.40 16 28 F -0.18 -1.08 16.46 44.97 0.74 -0.34 16 29 F -0.18 -1.02 16.46 44.97 0.74 -0.28 16 30 C -0.08 0.03 9.40 22.27 0.21 0.24 16 31 C -0.12 0.37 9.71 22.27 0.22 0.58 16 32 C -0.12 0.57 7.29 31.12 0.23 0.80 16 33 H 0.12 -0.32 8.14 -2.38 -0.02 -0.34 16 34 H 0.07 -0.27 7.66 -2.39 -0.02 -0.29 16 35 H 0.07 -0.31 7.66 -2.39 -0.02 -0.33 16 36 H 0.17 -0.41 4.50 -2.91 -0.01 -0.42 16 37 H 0.07 -0.55 7.65 -2.39 -0.02 -0.57 16 38 H 0.07 -0.45 7.65 -2.38 -0.02 -0.46 16 39 H 0.13 -1.14 8.14 -2.39 -0.02 -1.16 16 40 H 0.08 -0.19 7.82 -2.38 -0.02 -0.21 16 41 H 0.40 -4.25 8.74 -74.06 -0.65 -4.89 16 42 H -0.27 0.60 6.74 99.48 0.67 1.27 16 43 H -0.28 0.19 7.11 99.48 0.71 0.90 16 44 H 0.15 0.07 3.21 -2.91 -0.01 0.06 16 45 H 0.40 -0.64 6.72 -92.71 -0.62 -1.26 16 46 H 0.11 -0.37 6.32 -2.39 -0.02 -0.39 16 47 H 0.07 0.03 8.14 -2.39 -0.02 0.02 16 48 H 0.15 -0.90 6.68 -2.91 -0.02 -0.92 16 49 H 0.14 -0.26 7.61 -2.91 -0.02 -0.29 16 50 H 0.14 -0.40 7.60 -2.91 -0.02 -0.42 16 51 H 0.16 -1.20 8.06 -2.91 -0.02 -1.22 16 52 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 53 H 0.11 -0.64 7.72 -2.39 -0.02 -0.66 16 Total: 0.00 -26.40 443.50 3.60 -22.79 By element: Atomic # 1 Polarization: -12.24 SS G_CDS: -0.24 Total: -12.48 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 4.97 Total: 13.78 kcal Atomic # 7 Polarization: -2.12 SS G_CDS: -2.31 Total: -4.43 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -3.14 Total: -16.63 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 2.26 Total: -1.02 kcal Atomic # 14 Polarization: -4.09 SS G_CDS: 2.07 Total: -2.02 kcal Total: -26.40 3.60 -22.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705038_12297780.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.129 kcal (2) G-P(sol) polarization free energy of solvation -26.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds