Wall clock time and date at job start Mon Mar 8 2021 05:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86302 * 109.46651 * 2 1 4 4 C 1.50699 * 109.47411 * 239.99984 * 2 1 3 5 5 C 1.33734 * 125.11499 * 299.99703 * 4 2 1 6 6 C 1.37805 * 115.08047 * 179.73485 * 5 4 2 7 7 C 1.34989 * 114.69602 * 0.45646 * 6 5 4 8 8 C 1.47555 * 125.27400 * 179.83338 * 7 6 5 9 9 C 1.39823 * 120.00113 * 179.71664 * 8 7 6 10 10 C 1.36555 * 120.00513 * 180.02562 * 9 8 7 11 11 C 1.39831 * 119.99853 * 0.02562 * 10 9 8 12 12 C 1.47566 * 120.00221 * 179.97438 * 11 10 9 13 13 O 1.21588 * 119.99746 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00046 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00258 * 179.97438 * 14 12 11 16 16 H 1.09001 * 112.84832 * 25.33456 * 15 14 12 17 17 C 1.53777 * 113.61861 * 156.53091 * 15 14 12 18 18 C 1.53780 * 87.08203 * 89.11535 * 17 15 14 19 19 H 1.08998 * 113.61775 * 270.80171 * 18 17 15 20 20 C 1.50707 * 113.61309 * 139.97929 * 18 17 15 21 21 C 1.38238 * 120.00060 * 299.73420 * 20 18 17 22 22 C 1.38229 * 119.99661 * 179.74162 * 21 20 18 23 23 C 1.38234 * 120.00333 * 0.55504 * 22 21 20 24 24 C 1.50693 * 120.00398 * 179.72674 * 23 22 21 25 25 F 1.39902 * 109.47120 * 269.97279 * 24 23 22 26 26 F 1.39896 * 109.47370 * 29.97166 * 24 23 22 27 27 F 1.39904 * 109.47714 * 149.97280 * 24 23 22 28 28 C 1.38241 * 119.99691 * 359.69569 * 23 22 21 29 29 C 1.38228 * 119.99766 * 120.00211 * 20 18 17 30 30 C 1.53775 * 113.61719 * 254.14386 * 15 14 12 31 31 C 1.39836 * 120.00007 * 0.24926 * 11 10 9 32 32 C 1.36568 * 119.99333 * 359.48914 * 31 11 10 33 33 S 1.75852 * 125.11774 * 119.97464 * 4 2 1 34 34 H 0.96698 * 114.00273 * 299.99899 * 1 2 3 35 35 H 1.08995 * 109.46860 * 119.99085 * 2 1 3 36 36 H 1.48503 * 109.99908 * 299.99534 * 3 2 1 37 37 H 1.48499 * 110.00058 * 61.31511 * 3 2 1 38 38 H 1.08006 * 122.46627 * 359.97438 * 5 4 2 39 39 H 1.08000 * 122.65669 * 180.29812 * 6 5 4 40 40 H 1.07997 * 119.99556 * 0.02562 * 9 8 7 41 41 H 1.07999 * 120.00281 * 180.02562 * 10 9 8 42 42 H 0.96999 * 120.00047 * 0.02562 * 14 12 11 43 43 H 1.08996 * 113.62004 * 203.66850 * 17 15 14 44 44 H 1.09004 * 113.61075 * 334.48862 * 17 15 14 45 45 H 1.08000 * 119.99678 * 359.97438 * 21 20 18 46 46 H 1.08007 * 119.99998 * 180.27042 * 22 21 20 47 47 H 1.07998 * 120.00040 * 180.02562 * 28 23 22 48 48 H 1.08007 * 120.00098 * 0.02562 * 29 20 18 49 49 H 1.08999 * 113.61562 * 25.42357 * 30 15 14 50 50 H 1.09003 * 113.61852 * 156.33503 * 30 15 14 51 51 H 1.07998 * 120.00515 * 179.75063 * 31 11 10 52 52 H 1.07999 * 119.99622 * 180.25500 * 32 31 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9315 -0.7104 -1.2304 5 6 1.6723 -1.9847 -1.5427 6 6 2.2331 -2.4226 -2.7228 7 6 2.9667 -1.4968 -3.3763 8 6 3.6712 -1.7147 -4.6544 9 6 4.3971 -0.6725 -5.2391 10 6 5.0487 -0.8739 -6.4221 11 6 4.9895 -2.1223 -7.0492 12 6 5.6931 -2.3399 -8.3279 13 8 6.3240 -1.4335 -8.8365 14 7 5.6364 -3.5434 -8.9320 15 6 6.3344 -3.7593 -10.2018 16 1 7.1813 -3.0869 -10.3388 17 6 6.6683 -5.2347 -10.4782 18 6 5.2919 -5.3376 -11.1561 19 1 4.4877 -5.6099 -10.4726 20 6 5.2986 -6.1694 -12.4128 21 6 6.0956 -5.8017 -13.4808 22 6 6.1058 -6.5676 -14.6314 23 6 5.3103 -7.6948 -14.7186 24 6 5.3168 -8.5263 -15.9753 25 9 4.3356 -8.0527 -16.8529 26 9 6.5717 -8.4373 -16.5870 27 9 5.0489 -9.8611 -15.6528 28 6 4.5094 -8.0595 -13.6525 29 6 4.5036 -7.2968 -12.4997 30 6 5.3955 -3.8229 -11.4179 31 6 4.2587 -3.1630 -6.4674 32 6 3.6116 -2.9630 -5.2816 33 16 2.9463 0.0116 -2.4719 34 1 -0.3933 0.4417 0.7650 35 1 1.7923 -0.5137 0.8900 36 1 1.5614 2.4679 -1.2086 37 1 1.5877 2.4586 1.2242 38 1 1.0647 -2.6227 -0.9180 39 1 2.0987 -3.4278 -3.0943 40 1 4.4425 0.2918 -4.7550 41 1 5.6098 -0.0690 -6.8735 42 1 5.1328 -4.2664 -8.5264 43 1 7.5043 -5.3722 -11.1640 44 1 6.7579 -5.8386 -9.5752 45 1 6.7132 -4.9181 -13.4147 46 1 6.7318 -6.2828 -15.4642 47 1 3.8882 -8.9404 -13.7203 48 1 3.8773 -7.5814 -11.6670 49 1 4.4567 -3.2883 -11.2732 50 1 5.8840 -3.5752 -12.3603 51 1 4.2096 -4.1261 -6.9537 52 1 3.0506 -3.7679 -4.8301 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705038_13308390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:12:07 Heat of formation + Delta-G solvation = -92.160723 kcal Electronic energy + Delta-G solvation = -39956.690044 eV Core-core repulsion = 34144.407182 eV Total energy + Delta-G solvation = -5812.282862 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 460.111 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -51.22078 -48.74412 -48.69805 -41.79185 -40.92894 -39.95037 -39.12912 -38.66799 -37.51168 -34.94793 -33.57833 -32.71107 -32.15869 -31.99475 -30.53095 -28.02209 -27.15441 -26.69478 -25.28334 -24.54308 -24.04961 -23.85505 -23.31226 -22.41548 -21.80537 -20.25851 -20.07979 -19.58080 -19.51946 -19.40477 -19.01742 -18.69604 -18.34075 -17.44180 -17.00861 -16.80215 -16.46526 -16.23646 -16.10409 -15.99602 -15.84907 -15.62278 -15.54384 -15.49190 -15.41032 -15.15592 -14.98572 -14.93796 -14.86043 -14.81060 -14.57911 -14.47445 -14.35739 -14.33320 -14.17877 -14.09762 -13.99408 -13.49934 -13.37168 -13.28212 -13.18682 -13.05321 -12.77812 -12.74111 -12.38737 -12.36522 -12.15316 -11.90210 -11.77301 -11.59304 -11.22769 -11.12354 -10.82129 -10.50060 -10.16854 -10.13855 -10.04051 -9.91713 -9.54411 -9.00495 -5.09844 -0.87279 -0.11853 0.25245 0.28830 0.36245 0.39135 0.76685 1.17770 1.51807 1.58024 1.63262 1.84318 1.97167 2.02736 2.42475 2.70172 2.84679 2.97987 3.31374 3.36544 3.43046 3.44641 3.63801 3.67257 3.71126 3.75705 3.78435 3.84521 3.86846 3.89871 3.96785 4.19861 4.22852 4.32381 4.33435 4.37923 4.40418 4.47822 4.57438 4.63142 4.66196 4.69185 4.79207 4.85515 4.87655 4.94322 5.02067 5.03070 5.04504 5.11687 5.14401 5.20335 5.21407 5.24470 5.30527 5.34432 5.47218 5.50074 5.62994 5.75586 5.79204 6.46390 6.52007 7.14146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.037 4.037 3 Si 0.702 3.298 4 C -0.184 4.184 5 C -0.113 4.113 6 C -0.115 4.115 7 C -0.160 4.160 8 C 0.007 3.993 9 C -0.130 4.130 10 C -0.064 4.064 11 C -0.151 4.151 12 C 0.560 3.440 13 O -0.580 6.580 14 N -0.693 5.693 15 C 0.113 3.887 16 H 0.086 0.914 17 C -0.122 4.122 18 C -0.069 4.069 19 H 0.122 0.878 20 C -0.038 4.038 21 C -0.121 4.121 22 C -0.078 4.078 23 C -0.202 4.202 24 C 0.506 3.494 25 F -0.185 7.185 26 F -0.183 7.183 27 F -0.182 7.182 28 C -0.078 4.078 29 C -0.116 4.116 30 C -0.144 4.144 31 C -0.066 4.066 32 C -0.108 4.108 33 S 0.119 5.881 34 H 0.399 0.601 35 H 0.112 0.888 36 H -0.284 1.284 37 H -0.253 1.253 38 H 0.155 0.845 39 H 0.170 0.830 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.416 0.584 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.150 0.850 46 H 0.140 0.860 47 H 0.142 0.858 48 H 0.158 0.842 49 H 0.068 0.932 50 H 0.099 0.901 51 H 0.166 0.834 52 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.645 -3.616 7.383 8.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.149 4.149 3 Si 0.604 3.396 4 C -0.301 4.301 5 C -0.143 4.143 6 C -0.145 4.145 7 C -0.277 4.277 8 C 0.005 3.995 9 C -0.149 4.149 10 C -0.083 4.083 11 C -0.154 4.154 12 C 0.349 3.651 13 O -0.460 6.460 14 N -0.345 5.345 15 C 0.007 3.993 16 H 0.104 0.896 17 C -0.160 4.160 18 C -0.087 4.087 19 H 0.140 0.860 20 C -0.038 4.038 21 C -0.139 4.139 22 C -0.096 4.096 23 C -0.203 4.203 24 C 0.452 3.548 25 F -0.166 7.166 26 F -0.164 7.164 27 F -0.163 7.163 28 C -0.096 4.096 29 C -0.134 4.134 30 C -0.183 4.183 31 C -0.084 4.084 32 C -0.128 4.128 33 S 0.386 5.614 34 H 0.250 0.750 35 H 0.130 0.870 36 H -0.211 1.211 37 H -0.177 1.177 38 H 0.173 0.827 39 H 0.187 0.813 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.255 0.745 43 H 0.121 0.879 44 H 0.112 0.888 45 H 0.168 0.832 46 H 0.158 0.842 47 H 0.160 0.840 48 H 0.176 0.824 49 H 0.087 0.913 50 H 0.117 0.883 51 H 0.183 0.817 52 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.314 -1.015 6.267 6.357 hybrid contribution -1.907 -1.506 0.215 2.440 sum -1.593 -2.521 6.482 7.136 Atomic orbital electron populations 1.86555 1.17904 1.80470 1.51379 1.24107 0.84175 1.09956 0.96612 0.94588 0.91092 0.74256 0.79619 1.24069 1.06618 0.98277 1.01164 1.20206 1.01131 0.95063 0.97887 1.20640 0.97642 1.01442 0.94802 1.23174 1.06869 0.97948 0.99744 1.18463 0.95053 0.94760 0.91248 1.21020 0.98438 0.99276 0.96149 1.20934 0.96596 0.96635 0.94094 1.20016 1.03128 0.96208 0.96076 1.18447 0.79676 0.82533 0.84427 1.90788 1.44379 1.43814 1.67052 1.45442 1.52934 1.12968 1.23150 1.21889 0.95633 0.98604 0.83167 0.89621 1.23372 0.96926 0.93812 1.01908 1.21773 0.99578 0.93393 0.93958 0.86024 1.20139 0.93921 0.94469 0.95285 1.21246 0.99998 1.00438 0.92206 1.21114 0.96526 0.92544 0.99453 1.20021 1.06143 0.99970 0.94197 1.18538 0.73304 0.78287 0.84688 1.93218 1.63205 1.88246 1.71973 1.93181 1.42076 1.96052 1.85099 1.93183 1.93720 1.36760 1.92652 1.21167 0.96373 0.99873 0.92168 1.21352 0.99610 0.94432 0.97996 1.23630 1.00538 0.95327 0.98767 1.21271 0.93678 0.98684 0.94776 1.21206 0.99996 0.96298 0.95297 1.84189 1.48948 1.13242 1.14978 0.74993 0.87019 1.21090 1.17689 0.82736 0.81269 0.85062 0.85370 0.74484 0.87852 0.88808 0.83228 0.84243 0.83978 0.82429 0.91299 0.88262 0.81692 0.82093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.23 12.83 -148.98 -1.91 -2.14 16 2 C -0.04 0.06 2.95 71.24 0.21 0.27 16 3 Si 0.70 -0.95 30.96 68.60 2.12 1.17 16 4 C -0.18 -0.22 5.76 24.66 0.14 -0.08 16 5 C -0.11 0.01 10.00 21.14 0.21 0.22 16 6 C -0.11 0.19 9.64 21.42 0.21 0.40 16 7 C -0.16 -0.11 6.37 23.98 0.15 0.04 16 8 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 9 C -0.13 -0.24 9.54 22.26 0.21 -0.03 16 10 C -0.06 -0.22 9.53 22.26 0.21 -0.01 16 11 C -0.15 -0.13 5.88 -20.04 -0.12 -0.25 16 12 C 0.56 1.97 7.76 86.70 0.67 2.64 16 13 O -0.58 -7.37 15.95 -3.99 -0.06 -7.43 16 14 N -0.69 3.03 5.21 -443.19 -2.31 0.72 16 15 C 0.11 -0.47 4.29 45.52 0.20 -0.28 16 16 H 0.09 0.07 7.50 -2.39 -0.02 0.06 16 17 C -0.12 1.10 7.29 31.12 0.23 1.33 16 18 C -0.07 0.63 3.87 -10.92 -0.04 0.58 16 19 H 0.12 -1.53 8.09 -2.39 -0.02 -1.55 16 20 C -0.04 0.22 5.29 -19.86 -0.11 0.11 16 21 C -0.12 0.50 8.63 22.27 0.19 0.69 16 22 C -0.08 0.08 9.40 22.27 0.21 0.29 16 23 C -0.20 -0.22 5.45 -19.87 -0.11 -0.33 16 24 C 0.51 2.02 3.36 71.23 0.24 2.26 16 25 F -0.19 -1.13 17.30 44.97 0.78 -0.35 16 26 F -0.18 -0.96 16.46 44.97 0.74 -0.22 16 27 F -0.18 -0.89 16.46 44.97 0.74 -0.15 16 28 C -0.08 0.14 9.40 22.27 0.21 0.35 16 29 C -0.12 0.62 9.71 22.27 0.22 0.84 16 30 C -0.14 0.79 7.27 31.21 0.23 1.02 16 31 C -0.07 0.37 9.48 22.27 0.21 0.58 16 32 C -0.11 0.51 9.48 22.26 0.21 0.72 16 33 S 0.12 0.19 19.46 -56.49 -1.10 -0.91 16 34 H 0.40 -3.14 8.74 -74.06 -0.65 -3.79 16 35 H 0.11 -0.74 7.96 -2.39 -0.02 -0.76 16 36 H -0.28 -1.87 7.11 99.48 0.71 -1.16 16 37 H -0.25 -0.22 7.11 99.48 0.71 0.49 16 38 H 0.16 -0.41 8.06 -2.91 -0.02 -0.43 16 39 H 0.17 -1.26 6.88 -2.91 -0.02 -1.28 16 40 H 0.13 0.08 7.26 -2.91 -0.02 0.06 16 41 H 0.13 0.66 7.64 -2.91 -0.02 0.64 16 42 H 0.42 -4.70 6.71 -92.71 -0.62 -5.32 16 43 H 0.10 -0.92 7.73 -2.39 -0.02 -0.93 16 44 H 0.09 -1.04 8.14 -2.38 -0.02 -1.06 16 45 H 0.15 -1.12 6.64 -2.91 -0.02 -1.14 16 46 H 0.14 -0.35 7.60 -2.91 -0.02 -0.37 16 47 H 0.14 -0.54 7.60 -2.91 -0.02 -0.56 16 48 H 0.16 -1.66 8.06 -2.91 -0.02 -1.68 16 49 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 50 H 0.10 -0.58 6.30 -2.39 -0.02 -0.59 16 51 H 0.17 -2.25 6.38 -2.91 -0.02 -2.27 16 52 H 0.16 -1.67 6.74 -2.91 -0.02 -1.69 16 Total: 0.00 -24.11 457.28 2.47 -21.64 By element: Atomic # 1 Polarization: -23.39 SS G_CDS: -0.20 Total: -23.59 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 3.67 Total: 11.26 kcal Atomic # 7 Polarization: 3.03 SS G_CDS: -2.31 Total: 0.72 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -1.98 Total: -9.57 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 2.26 Total: -0.72 kcal Atomic # 14 Polarization: -0.95 SS G_CDS: 2.12 Total: 1.17 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -1.10 Total: -0.91 kcal Total: -24.11 2.47 -21.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705038_13308390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.518 kcal (2) G-P(sol) polarization free energy of solvation -24.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds