Wall clock time and date at job start Mon Mar 8 2021 05:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.46974 * 2 1 4 4 C 1.50701 * 109.47417 * 120.00123 * 2 1 3 5 5 C 1.34177 * 125.43575 * 64.99922 * 4 2 1 6 6 C 1.47025 * 105.95014 * 179.97438 * 5 4 2 7 7 C 1.47379 * 127.18977 * 180.02562 * 6 5 4 8 8 O 1.21613 * 120.00120 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00132 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00019 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.85261 * 23.79625 * 10 9 7 12 12 C 1.53779 * 113.61208 * 154.99624 * 10 9 7 13 13 C 1.53784 * 87.07992 * 89.11487 * 12 10 9 14 14 H 1.08993 * 113.61272 * 270.79771 * 13 12 10 15 15 C 1.50707 * 113.61254 * 139.97870 * 13 12 10 16 16 C 1.38238 * 120.00037 * 299.72638 * 15 13 12 17 17 C 1.38237 * 119.99664 * 179.81341 * 16 15 13 18 18 C 1.38228 * 119.99809 * 0.39508 * 17 16 15 19 19 C 1.50708 * 119.99770 * 179.83883 * 18 17 16 20 20 F 1.39901 * 109.46770 * 270.01887 * 19 18 17 21 21 F 1.39899 * 109.47074 * 30.01903 * 19 18 17 22 22 F 1.39895 * 109.47456 * 150.02336 * 19 18 17 23 23 C 1.38231 * 120.00786 * 359.85774 * 18 17 16 24 24 C 1.38233 * 119.99873 * 120.00273 * 15 13 12 25 25 C 1.53779 * 113.61374 * 252.49565 * 10 9 7 26 26 C 1.36413 * 105.61642 * 0.02562 * 6 5 4 27 27 O 1.33654 * 108.39777 * 359.75377 * 26 6 5 28 28 H 0.96708 * 114.00101 * 299.99304 * 1 2 3 29 29 H 1.09002 * 109.46984 * 240.00143 * 2 1 3 30 30 H 1.48493 * 110.00101 * 300.00094 * 3 2 1 31 31 H 1.48502 * 109.99925 * 61.32089 * 3 2 1 32 32 H 1.07991 * 127.02376 * 359.97438 * 5 4 2 33 33 H 0.96997 * 119.99506 * 359.97438 * 9 7 6 34 34 H 1.09002 * 113.61107 * 203.65949 * 12 10 9 35 35 H 1.08995 * 113.61529 * 334.57002 * 12 10 9 36 36 H 1.07995 * 119.99801 * 0.02562 * 16 15 13 37 37 H 1.08001 * 119.99534 * 180.22923 * 17 16 15 38 38 H 1.07993 * 120.00655 * 179.97438 * 23 18 17 39 39 H 1.08008 * 120.00030 * 359.97438 * 24 15 13 40 40 H 1.09004 * 113.61726 * 25.43205 * 25 10 9 41 41 H 1.09000 * 113.61774 * 156.33923 * 25 10 9 42 42 H 1.08002 * 125.79905 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7551 -2.0122 1.5036 6 6 2.4132 -2.2463 2.7974 7 6 2.5017 -3.5195 3.5343 8 8 1.9942 -4.5246 3.0749 9 7 3.1443 -3.5697 4.7180 10 6 3.2329 -4.8355 5.4503 11 1 3.1309 -5.7068 4.8034 12 6 4.4376 -4.9130 6.4029 13 6 3.5280 -4.2937 7.4771 14 1 3.5439 -3.2039 7.4873 15 6 3.7154 -4.8946 8.8465 16 6 3.4856 -6.2429 9.0469 17 6 3.6613 -6.7948 10.3021 18 6 4.0588 -5.9968 11.3585 19 6 4.2468 -6.5978 12.7277 20 9 3.0418 -6.5314 13.4355 21 9 4.6398 -7.9344 12.6003 22 9 5.2330 -5.8855 13.4183 23 6 4.2835 -4.6475 11.1592 24 6 4.1116 -4.0964 9.9032 25 6 2.3401 -4.8871 6.7013 26 6 2.9245 -1.0387 3.1730 27 8 2.6309 -0.1430 2.2255 28 1 -0.3934 0.4416 0.7652 29 1 1.7923 -0.5138 -0.8900 30 1 1.5614 2.4679 -1.2084 31 1 1.5878 2.4585 1.2243 32 1 1.2360 -2.7394 0.8971 33 1 3.5488 -2.7680 5.0846 34 1 4.7497 -5.9324 6.6299 35 1 5.2677 -4.2702 6.1102 36 1 3.1722 -6.8657 8.2222 37 1 3.4853 -7.8489 10.4579 38 1 4.5937 -4.0240 11.9846 39 1 4.2872 -3.0421 9.7474 40 1 1.4770 -4.2233 6.6496 41 1 2.0790 -5.8993 7.0100 42 1 3.4770 -0.8411 4.0798 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705038_13456056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:12:42 Heat of formation + Delta-G solvation = -140.201067 kcal Electronic energy + Delta-G solvation = -31382.810527 eV Core-core repulsion = 26268.353601 eV Total energy + Delta-G solvation = -5114.456926 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.107 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.23061 -48.75442 -48.70835 -43.71073 -41.60340 -40.35756 -38.86810 -38.15291 -34.92361 -33.89170 -32.73993 -32.09454 -31.60071 -27.98686 -26.72551 -26.69377 -25.59116 -24.54264 -23.89682 -22.40674 -22.32209 -21.11302 -20.25939 -19.58737 -19.52775 -19.43105 -19.28204 -17.84219 -17.70968 -17.52980 -17.02296 -16.73402 -16.40605 -16.11799 -16.02888 -15.86654 -15.63938 -15.54653 -15.48270 -15.16902 -15.08144 -14.94013 -14.87042 -14.62411 -14.46973 -14.35589 -14.22709 -14.05827 -13.96721 -13.57793 -13.45051 -13.24844 -12.94758 -12.78186 -12.37276 -12.13676 -11.90968 -11.77561 -11.27930 -11.22316 -10.97133 -10.75686 -10.17621 -10.04827 -9.92761 -9.78039 -4.90816 -0.12476 0.27235 0.28359 0.82023 1.18737 1.54373 1.62398 1.76453 1.96503 2.01908 2.23736 2.42056 2.69289 2.97137 3.22314 3.35589 3.43826 3.49136 3.56042 3.63981 3.70242 3.83906 3.89291 3.96092 3.98852 4.20478 4.31829 4.33447 4.39925 4.44187 4.51872 4.66295 4.68714 4.78772 4.84620 4.88149 4.91954 5.01833 5.03886 5.13596 5.13952 5.19840 5.20850 5.46318 5.62568 5.78809 5.84205 6.35053 6.47815 7.15740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.047 4.047 3 Si 0.792 3.208 4 C -0.050 4.050 5 C -0.151 4.151 6 C -0.270 4.270 7 C 0.589 3.411 8 O -0.586 6.586 9 N -0.691 5.691 10 C 0.113 3.887 11 H 0.083 0.917 12 C -0.122 4.122 13 C -0.068 4.068 14 H 0.125 0.875 15 C -0.038 4.038 16 C -0.122 4.122 17 C -0.079 4.079 18 C -0.203 4.203 19 C 0.505 3.495 20 F -0.185 7.185 21 F -0.183 7.183 22 F -0.182 7.182 23 C -0.078 4.078 24 C -0.115 4.115 25 C -0.145 4.145 26 C 0.069 3.931 27 O -0.165 6.165 28 H 0.391 0.609 29 H 0.147 0.853 30 H -0.290 1.290 31 H -0.285 1.285 32 H 0.143 0.857 33 H 0.418 0.582 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.160 0.840 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.116 6.253 0.016 8.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.155 4.155 3 Si 0.695 3.305 4 C -0.099 4.099 5 C -0.171 4.171 6 C -0.274 4.274 7 C 0.378 3.622 8 O -0.467 6.467 9 N -0.343 5.343 10 C 0.008 3.992 11 H 0.101 0.899 12 C -0.160 4.160 13 C -0.086 4.086 14 H 0.143 0.857 15 C -0.038 4.038 16 C -0.140 4.140 17 C -0.097 4.097 18 C -0.204 4.204 19 C 0.451 3.549 20 F -0.167 7.167 21 F -0.164 7.164 22 F -0.163 7.163 23 C -0.096 4.096 24 C -0.133 4.133 25 C -0.183 4.183 26 C -0.002 4.002 27 O -0.060 6.060 28 H 0.241 0.759 29 H 0.165 0.835 30 H -0.217 1.217 31 H -0.211 1.211 32 H 0.161 0.839 33 H 0.256 0.744 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.177 0.823 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 4.714 6.337 -0.819 7.940 hybrid contribution -1.267 -0.780 1.180 1.899 sum 3.447 5.557 0.360 6.549 Atomic orbital electron populations 1.86654 1.17597 1.80584 1.50054 1.24719 0.83446 1.13365 0.93920 0.93458 0.89812 0.70232 0.77001 1.22658 1.01409 0.92752 0.93054 1.22573 1.02237 0.95922 0.96410 1.21454 1.11524 0.95001 0.99437 1.17507 0.77186 0.86849 0.80621 1.90797 1.48890 1.37599 1.69437 1.45299 1.56359 1.12717 1.19915 1.21874 0.98051 0.86894 0.92415 0.89873 1.23381 0.96245 1.03405 0.92939 1.21731 0.96670 1.01283 0.88872 0.85707 1.20151 0.94635 0.93367 0.95691 1.21249 1.00400 0.95555 0.96767 1.21109 0.95898 1.00394 0.92269 1.20027 1.11737 0.96985 0.91650 1.18552 0.73617 0.75857 0.86838 1.93217 1.46205 1.96104 1.81131 1.93182 1.90974 1.36154 1.96120 1.93181 1.62964 1.78241 1.81913 1.21174 0.96358 0.92682 0.99371 1.21364 0.99353 1.01619 0.90968 1.23588 0.97175 1.02698 0.94878 1.25348 0.96717 0.84921 0.93186 1.83726 1.56717 1.39167 1.26439 0.75941 0.83508 1.21677 1.21096 0.83936 0.74423 0.88020 0.88587 0.83319 0.84313 0.83951 0.82257 0.91256 0.88428 0.71913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.60 12.88 -148.98 -1.92 -2.52 16 2 C -0.05 0.11 2.97 71.24 0.21 0.32 16 3 Si 0.79 -3.43 32.09 68.60 2.20 -1.22 16 4 C -0.05 0.04 6.18 24.76 0.15 0.19 16 5 C -0.15 -0.57 10.90 23.65 0.26 -0.31 16 6 C -0.27 -0.09 6.31 -18.99 -0.12 -0.21 16 7 C 0.59 2.11 7.81 86.65 0.68 2.78 16 8 O -0.59 -8.41 16.58 -4.07 -0.07 -8.48 16 9 N -0.69 3.87 5.25 -443.35 -2.33 1.54 16 10 C 0.11 -0.54 4.32 45.52 0.20 -0.34 16 11 H 0.08 0.09 7.46 -2.39 -0.02 0.07 16 12 C -0.12 1.20 7.29 31.12 0.23 1.43 16 13 C -0.07 0.68 3.86 -11.01 -0.04 0.64 16 14 H 0.12 -1.78 8.09 -2.39 -0.02 -1.80 16 15 C -0.04 0.24 5.29 -19.86 -0.11 0.14 16 16 C -0.12 0.54 8.62 22.27 0.19 0.73 16 17 C -0.08 0.09 9.40 22.27 0.21 0.30 16 18 C -0.20 -0.17 5.45 -19.87 -0.11 -0.27 16 19 C 0.51 1.93 3.36 71.24 0.24 2.17 16 20 F -0.19 -1.10 17.30 44.97 0.78 -0.33 16 21 F -0.18 -0.94 16.46 44.97 0.74 -0.20 16 22 F -0.18 -0.85 16.46 44.97 0.74 -0.11 16 23 C -0.08 0.18 9.40 22.27 0.21 0.39 16 24 C -0.12 0.71 9.71 22.27 0.22 0.92 16 25 C -0.14 0.89 7.25 31.12 0.23 1.12 16 26 C 0.07 -0.55 11.61 67.39 0.78 0.23 16 27 O -0.17 0.70 8.90 4.48 0.04 0.74 16 28 H 0.39 -1.86 8.70 -74.05 -0.64 -2.50 16 29 H 0.15 -0.70 7.96 -2.39 -0.02 -0.72 16 30 H -0.29 -0.69 7.11 99.48 0.71 0.02 16 31 H -0.28 -0.13 7.11 99.48 0.71 0.57 16 32 H 0.14 0.98 8.06 -2.92 -0.02 0.95 16 33 H 0.42 -5.83 7.67 -92.71 -0.71 -6.55 16 34 H 0.10 -0.94 7.73 -2.39 -0.02 -0.96 16 35 H 0.10 -1.18 8.14 -2.39 -0.02 -1.20 16 36 H 0.15 -1.13 6.64 -2.91 -0.02 -1.15 16 37 H 0.14 -0.36 7.61 -2.91 -0.02 -0.38 16 38 H 0.14 -0.61 7.60 -2.91 -0.02 -0.64 16 39 H 0.16 -1.84 8.06 -2.91 -0.02 -1.87 16 40 H 0.07 -0.28 8.14 -2.38 -0.02 -0.29 16 41 H 0.10 -0.59 6.30 -2.39 -0.02 -0.60 16 42 H 0.27 -5.26 7.47 -2.91 -0.02 -5.28 16 Total: 0.00 -26.09 375.54 3.40 -22.68 By element: Atomic # 1 Polarization: -22.13 SS G_CDS: -0.20 Total: -22.34 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 3.42 Total: 10.24 kcal Atomic # 7 Polarization: 3.87 SS G_CDS: -2.33 Total: 1.54 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -1.95 Total: -10.26 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 2.26 Total: -0.64 kcal Atomic # 14 Polarization: -3.43 SS G_CDS: 2.20 Total: -1.22 kcal Total: -26.09 3.40 -22.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705038_13456056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.516 kcal (2) G-P(sol) polarization free energy of solvation -26.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds