Wall clock time and date at job start Mon Mar 8 2021 05:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42891 * 1 3 3 Si 1.86304 * 109.47117 * 2 1 4 4 C 1.50696 * 109.47300 * 119.99708 * 2 1 3 5 5 C 1.38708 * 120.02796 * 74.99985 * 4 2 1 6 6 O 1.35899 * 120.05751 * 0.02562 * 5 4 2 7 7 C 1.42894 * 117.00336 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47544 * 179.97438 * 7 6 5 9 9 O 1.21290 * 119.99643 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00364 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99900 * 180.02562 * 10 8 7 12 12 H 1.09004 * 112.85154 * 336.18913 * 11 10 8 13 13 C 1.53776 * 113.61843 * 107.50340 * 11 10 8 14 14 C 1.53776 * 87.08552 * 89.11302 * 13 11 10 15 15 H 1.09000 * 113.61292 * 270.88758 * 14 13 11 16 16 C 1.50692 * 113.61688 * 139.98046 * 14 13 11 17 17 C 1.38237 * 120.00266 * 322.23266 * 16 14 13 18 18 C 1.38237 * 120.00006 * 179.76274 * 17 16 14 19 19 C 1.38234 * 120.00121 * 0.48782 * 18 17 16 20 20 C 1.50700 * 119.99731 * 179.76693 * 19 18 17 21 21 F 1.39894 * 109.47222 * 270.02061 * 20 19 18 22 22 F 1.39902 * 109.47572 * 30.02451 * 20 19 18 23 23 F 1.39907 * 109.46785 * 150.02190 * 20 19 18 24 24 C 1.38229 * 119.99926 * 359.78634 * 19 18 17 25 25 C 1.38236 * 120.00260 * 359.96052 * 24 19 18 26 26 C 1.53785 * 87.07991 * 25.43529 * 14 13 11 27 27 C 1.38759 * 119.89010 * 179.97438 * 5 4 2 28 28 C 1.38119 * 119.94381 * 0.02562 * 27 5 4 29 29 C 1.38285 * 120.05710 * 359.97438 * 28 27 5 30 30 C 1.38171 * 120.03158 * 254.95817 * 4 2 1 31 31 H 0.96696 * 114.00465 * 300.00120 * 1 2 3 32 32 H 1.09001 * 109.47469 * 240.00199 * 2 1 3 33 33 H 1.48504 * 109.99607 * 299.99482 * 3 2 1 34 34 H 1.48495 * 110.00039 * 61.31366 * 3 2 1 35 35 H 1.09005 * 109.46979 * 299.99602 * 7 6 5 36 36 H 1.09002 * 109.47431 * 59.99436 * 7 6 5 37 37 H 0.96994 * 119.99979 * 359.97438 * 10 8 7 38 38 H 1.09004 * 113.61445 * 203.66591 * 13 11 10 39 39 H 1.09005 * 113.61261 * 334.56118 * 13 11 10 40 40 H 1.08002 * 119.99749 * 359.97438 * 17 16 14 41 41 H 1.08003 * 119.99795 * 180.25035 * 18 17 16 42 42 H 1.08001 * 120.00060 * 179.97438 * 24 19 18 43 43 H 1.07993 * 120.00179 * 179.97438 * 25 24 19 44 44 H 1.08995 * 113.61466 * 220.02433 * 26 14 13 45 45 H 1.09003 * 113.61497 * 89.11673 * 26 14 13 46 46 H 1.08001 * 120.03037 * 180.02562 * 27 5 4 47 47 H 1.07997 * 119.97310 * 179.97438 * 28 27 5 48 48 H 1.08000 * 119.95126 * 179.74932 * 29 28 27 49 49 H 1.08005 * 119.97031 * 0.02562 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.8696 -2.0939 1.3070 6 8 1.3567 -2.8107 0.2726 7 6 1.3251 -4.2316 0.4205 8 6 0.7276 -4.8523 -0.8160 9 8 0.3642 -4.1470 -1.7334 10 7 0.5971 -6.1909 -0.9023 11 6 0.0168 -6.7942 -2.1046 12 1 -0.6277 -6.1077 -2.6538 13 6 1.0460 -7.5171 -2.9894 14 6 0.7615 -8.7771 -2.1550 15 1 1.3969 -8.8703 -1.2743 16 6 0.7025 -10.0417 -2.9723 17 6 0.1305 -10.0255 -4.2307 18 6 0.0809 -11.1846 -4.9824 19 6 0.5942 -12.3621 -4.4717 20 6 0.5354 -13.6268 -5.2891 21 9 -0.6589 -14.3027 -5.0171 22 9 0.5901 -13.3057 -6.6497 23 9 1.6205 -14.4461 -4.9594 24 6 1.1612 -12.3796 -3.2111 25 6 1.2155 -11.2194 -2.4615 26 6 -0.6203 -8.1717 -1.8565 27 6 2.3335 -2.7451 2.4411 28 6 2.8548 -2.0144 3.4909 29 6 2.9152 -0.6351 3.4122 30 6 2.4545 0.0160 2.2830 31 1 -0.3934 0.4417 0.7650 32 1 1.7923 -0.5138 -0.8900 33 1 1.5614 2.4678 -1.2086 34 1 1.5877 2.4586 1.2241 35 1 2.3395 -4.6050 0.5609 36 1 0.7184 -4.4933 1.2874 37 1 0.8881 -6.7549 -0.1688 38 1 0.7402 -7.6054 -4.0319 39 1 2.0618 -7.1384 -2.8759 40 1 -0.2746 -9.1065 -4.6279 41 1 -0.3625 -11.1710 -5.9671 42 1 1.5619 -13.2997 -2.8120 43 1 1.6581 -11.2332 -1.4765 44 1 -0.9497 -8.3215 -0.8283 45 1 -1.3818 -8.4391 -2.5892 46 1 2.2870 -3.8223 2.5030 47 1 3.2156 -2.5207 4.3740 48 1 3.3194 -0.0652 4.2357 49 1 2.5030 1.0933 2.2238 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705038_2989392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:13:12 Heat of formation + Delta-G solvation = -161.045078 kcal Electronic energy + Delta-G solvation = -36815.253086 eV Core-core repulsion = 31260.590917 eV Total energy + Delta-G solvation = -5554.662169 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.138 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -51.23820 -48.76263 -48.71497 -41.82069 -41.35203 -40.42582 -39.11627 -38.35451 -37.59819 -34.85936 -32.89542 -32.66534 -32.09607 -31.21436 -29.48294 -27.72578 -26.72301 -26.68485 -25.12041 -24.09843 -23.58572 -22.62793 -22.43482 -21.82406 -20.27085 -19.59815 -19.53470 -19.50463 -19.40324 -18.37161 -18.15207 -17.47927 -17.36743 -16.89618 -16.78479 -16.54664 -16.30078 -16.01932 -15.87976 -15.63551 -15.56024 -15.50586 -15.42919 -15.17575 -15.07559 -15.02033 -14.94978 -14.87808 -14.67395 -14.48452 -14.32753 -14.18804 -14.09778 -13.72584 -13.57853 -13.42404 -13.23014 -13.04204 -12.80421 -12.52342 -12.38849 -12.11262 -11.93540 -11.86035 -11.79675 -11.68047 -11.27017 -11.03375 -10.53245 -10.19757 -10.06126 -9.96032 -9.93905 -9.20013 -4.95538 -0.13880 0.25224 0.26870 0.43773 1.28986 1.40969 1.47167 1.54127 1.61453 1.93493 2.40407 2.58889 2.68338 2.71775 2.96086 3.34762 3.41855 3.45765 3.50573 3.62115 3.67337 3.73085 3.82093 3.87948 3.91000 3.93590 3.98620 4.08068 4.14708 4.18696 4.30397 4.33514 4.38491 4.38836 4.55235 4.61317 4.67225 4.68987 4.76120 4.82237 4.85237 4.99631 4.99664 5.01677 5.11227 5.18346 5.19085 5.30060 5.39400 5.43368 5.55086 5.59890 5.77293 5.77830 6.28794 6.46499 6.53024 7.11808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.082 4.082 3 Si 0.781 3.219 4 C -0.165 4.165 5 C 0.130 3.870 6 O -0.313 6.313 7 C 0.037 3.963 8 C 0.515 3.485 9 O -0.571 6.571 10 N -0.691 5.691 11 C 0.113 3.887 12 H 0.080 0.920 13 C -0.144 4.144 14 C -0.067 4.067 15 H 0.125 0.875 16 C -0.039 4.039 17 C -0.122 4.122 18 C -0.078 4.078 19 C -0.202 4.202 20 C 0.506 3.494 21 F -0.184 7.184 22 F -0.183 7.183 23 F -0.182 7.182 24 C -0.077 4.077 25 C -0.115 4.115 26 C -0.123 4.123 27 C -0.211 4.211 28 C -0.074 4.074 29 C -0.155 4.155 30 C -0.089 4.089 31 H 0.381 0.619 32 H 0.096 0.904 33 H -0.308 1.308 34 H -0.265 1.265 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.422 0.578 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.148 0.852 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.159 0.841 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.156 0.844 47 H 0.154 0.846 48 H 0.149 0.851 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.703 -1.475 9.347 10.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.189 4.189 3 Si 0.685 3.315 4 C -0.166 4.166 5 C 0.084 3.916 6 O -0.226 6.226 7 C -0.041 4.041 8 C 0.301 3.699 9 O -0.448 6.448 10 N -0.345 5.345 11 C 0.008 3.992 12 H 0.099 0.901 13 C -0.182 4.182 14 C -0.085 4.085 15 H 0.143 0.857 16 C -0.039 4.039 17 C -0.140 4.140 18 C -0.097 4.097 19 C -0.204 4.204 20 C 0.452 3.548 21 F -0.166 7.166 22 F -0.165 7.165 23 F -0.163 7.163 24 C -0.095 4.095 25 C -0.133 4.133 26 C -0.161 4.161 27 C -0.229 4.229 28 C -0.092 4.092 29 C -0.173 4.173 30 C -0.106 4.106 31 H 0.230 0.770 32 H 0.114 0.886 33 H -0.237 1.237 34 H -0.191 1.191 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.260 0.740 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.166 0.834 41 H 0.157 0.843 42 H 0.161 0.839 43 H 0.177 0.823 44 H 0.113 0.887 45 H 0.119 0.881 46 H 0.174 0.826 47 H 0.172 0.828 48 H 0.167 0.833 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.237 -0.446 7.941 9.012 hybrid contribution -1.185 -1.056 0.059 1.588 sum 3.052 -1.503 8.000 8.693 Atomic orbital electron populations 1.86647 1.18990 1.80337 1.49687 1.25189 0.83238 1.12311 0.98198 0.94065 0.89886 0.71006 0.76552 1.19704 1.06788 0.91522 0.98578 1.19057 0.94098 0.91052 0.87367 1.86187 1.78030 1.18726 1.39693 1.22711 1.04589 0.79917 0.96917 1.20557 0.78165 0.82974 0.88215 1.90788 1.49980 1.62577 1.41494 1.45311 1.63376 1.05377 1.20465 1.21864 0.96018 0.94643 0.86724 0.90144 1.23576 1.00088 0.94946 0.99598 1.21719 0.98648 0.89534 0.98592 0.85693 1.20145 0.94362 0.95333 0.94039 1.21241 1.00069 0.98273 0.94402 1.21109 0.96582 0.91426 1.00538 1.20026 1.09886 0.92596 0.97855 1.18542 0.73404 0.84833 0.78061 1.93216 1.47408 1.82342 1.93596 1.93183 1.96082 1.92697 1.34503 1.93184 1.55582 1.75261 1.92295 1.21174 0.95901 1.00527 0.91938 1.21360 0.99848 0.90941 1.01144 1.23384 0.96234 0.92035 1.04422 1.21598 1.05522 1.01869 0.93956 1.21400 0.95428 0.94155 0.98241 1.21400 1.02059 0.95166 0.98645 1.21186 0.96482 1.00471 0.92481 0.77023 0.88554 1.23698 1.19117 0.85612 0.86143 0.73973 0.88510 0.90954 0.83391 0.84304 0.83907 0.82292 0.88744 0.88113 0.82631 0.82843 0.83287 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -5.61 12.88 -148.98 -1.92 -7.53 16 2 C -0.08 -0.51 2.38 71.23 0.17 -0.34 16 3 Si 0.78 0.97 30.25 68.60 2.07 3.05 16 4 C -0.16 -0.62 5.27 -19.77 -0.10 -0.72 16 5 C 0.13 0.46 6.66 22.51 0.15 0.61 16 6 O -0.31 -2.16 9.00 -73.38 -0.66 -2.82 16 7 C 0.04 -0.11 5.22 71.24 0.37 0.26 16 8 C 0.51 1.23 7.91 87.66 0.69 1.92 16 9 O -0.57 -8.62 16.10 15.97 0.26 -8.36 16 10 N -0.69 4.14 5.26 -440.03 -2.32 1.83 16 11 C 0.11 -0.48 4.32 45.52 0.20 -0.28 16 12 H 0.08 0.17 7.46 -2.38 -0.02 0.15 16 13 C -0.14 0.84 7.25 31.12 0.23 1.07 16 14 C -0.07 0.64 3.86 -11.02 -0.04 0.60 16 15 H 0.13 -1.70 8.10 -2.39 -0.02 -1.72 16 16 C -0.04 0.23 5.29 -19.87 -0.11 0.12 16 17 C -0.12 0.48 8.60 22.27 0.19 0.67 16 18 C -0.08 0.06 9.40 22.27 0.21 0.27 16 19 C -0.20 -0.23 5.45 -19.87 -0.11 -0.34 16 20 C 0.51 2.05 3.36 71.24 0.24 2.29 16 21 F -0.18 -1.09 17.30 44.97 0.78 -0.32 16 22 F -0.18 -1.02 16.46 44.97 0.74 -0.28 16 23 F -0.18 -0.91 16.46 44.97 0.74 -0.17 16 24 C -0.08 0.15 9.40 22.27 0.21 0.36 16 25 C -0.12 0.66 9.71 22.27 0.22 0.87 16 26 C -0.12 1.11 7.29 31.12 0.23 1.33 16 27 C -0.21 0.61 9.04 22.37 0.20 0.81 16 28 C -0.07 0.34 10.04 22.25 0.22 0.56 16 29 C -0.15 0.53 10.04 22.28 0.22 0.76 16 30 C -0.09 0.06 8.66 22.26 0.19 0.26 16 31 H 0.38 1.05 8.70 -74.06 -0.64 0.41 16 32 H 0.10 0.91 7.83 -2.39 -0.02 0.89 16 33 H -0.31 -2.97 7.11 99.48 0.71 -2.26 16 34 H -0.27 -0.50 6.69 99.48 0.67 0.16 16 35 H 0.13 -1.26 7.66 -2.38 -0.02 -1.28 16 36 H 0.12 -1.08 7.66 -2.39 -0.02 -1.10 16 37 H 0.42 -5.94 8.70 -92.71 -0.81 -6.75 16 38 H 0.10 -0.54 6.32 -2.39 -0.02 -0.55 16 39 H 0.07 -0.31 8.14 -2.38 -0.02 -0.33 16 40 H 0.15 -1.04 6.68 -2.91 -0.02 -1.06 16 41 H 0.14 -0.31 7.61 -2.91 -0.02 -0.33 16 42 H 0.14 -0.58 7.60 -2.91 -0.02 -0.60 16 43 H 0.16 -1.76 8.06 -2.91 -0.02 -1.78 16 44 H 0.09 -1.06 8.14 -2.39 -0.02 -1.08 16 45 H 0.10 -0.84 7.71 -2.39 -0.02 -0.86 16 46 H 0.16 -1.46 6.30 -2.91 -0.02 -1.48 16 47 H 0.15 -1.51 8.06 -2.91 -0.02 -1.54 16 48 H 0.15 -1.18 8.06 -2.91 -0.02 -1.20 16 49 H 0.15 -0.53 4.86 -2.91 -0.01 -0.55 16 Total: 0.00 -29.21 420.31 2.87 -26.34 By element: Atomic # 1 Polarization: -22.43 SS G_CDS: -0.41 Total: -22.84 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 3.58 Total: 11.09 kcal Atomic # 7 Polarization: 4.14 SS G_CDS: -2.32 Total: 1.83 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -2.32 Total: -18.71 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 2.26 Total: -0.76 kcal Atomic # 14 Polarization: 0.97 SS G_CDS: 2.07 Total: 3.05 kcal Total: -29.21 2.87 -26.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705038_2989392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.703 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds