Wall clock time and date at job start Mon Mar 8 2021 05:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86297 * 109.46794 * 2 1 4 4 C 1.50695 * 109.47315 * 120.00181 * 2 1 3 5 5 C 1.38271 * 119.94536 * 64.99850 * 4 2 1 6 6 C 1.38146 * 120.05120 * 180.02562 * 5 4 2 7 7 C 1.38731 * 119.95005 * 359.97438 * 6 5 4 8 8 O 1.35895 * 120.05460 * 180.02562 * 7 6 5 9 9 C 1.42905 * 116.99583 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.46982 * 179.97438 * 9 8 7 11 11 O 1.21286 * 120.00036 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00297 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00397 * 180.02562 * 12 10 9 14 14 H 1.09000 * 112.85229 * 336.19030 * 13 12 10 15 15 C 1.53783 * 113.69328 * 107.46161 * 13 12 10 16 16 C 1.53779 * 87.08047 * 89.12851 * 15 13 12 17 17 H 1.08997 * 113.68940 * 270.87165 * 16 15 13 18 18 C 1.50706 * 113.61448 * 139.98417 * 16 15 13 19 19 C 1.38234 * 120.00196 * 142.50275 * 18 16 15 20 20 C 1.38235 * 119.99814 * 179.97438 * 19 18 16 21 21 C 1.38230 * 120.00326 * 359.97438 * 20 19 18 22 22 C 1.50697 * 120.00365 * 180.02562 * 21 20 19 23 23 F 1.39899 * 109.47331 * 89.99568 * 22 21 20 24 24 F 1.39899 * 109.47391 * 209.99610 * 22 21 20 25 25 F 1.39904 * 109.46849 * 329.99970 * 22 21 20 26 26 C 1.38234 * 119.99885 * 359.97438 * 21 20 19 27 27 C 1.38235 * 120.00183 * 0.02871 * 26 21 20 28 28 C 1.53775 * 87.08312 * 25.43268 * 16 15 13 29 29 C 1.38735 * 119.88465 * 0.27618 * 7 6 5 30 30 C 1.38145 * 119.94450 * 359.43059 * 29 7 6 31 31 H 0.96699 * 113.99972 * 60.00039 * 1 2 3 32 32 H 1.08998 * 109.46874 * 240.00213 * 2 1 3 33 33 H 1.48500 * 110.00340 * 298.67959 * 3 2 1 34 34 H 1.48500 * 110.00007 * 60.00093 * 3 2 1 35 35 H 1.07991 * 119.97204 * 359.97438 * 5 4 2 36 36 H 1.07999 * 120.02002 * 180.02562 * 6 5 4 37 37 H 1.09004 * 109.47116 * 60.00599 * 9 8 7 38 38 H 1.09000 * 109.47317 * 299.99803 * 9 8 7 39 39 H 0.97000 * 119.99970 * 359.97438 * 12 10 9 40 40 H 1.08991 * 113.61640 * 334.57534 * 15 13 12 41 41 H 1.09007 * 113.61078 * 203.67641 * 15 13 12 42 42 H 1.08000 * 119.99516 * 0.24808 * 19 18 16 43 43 H 1.08000 * 119.99318 * 179.97438 * 20 19 18 44 44 H 1.08000 * 120.00029 * 180.02562 * 26 21 20 45 45 H 1.08005 * 120.00184 * 179.97438 * 27 26 21 46 46 H 1.09005 * 113.61358 * 89.11807 * 28 16 15 47 47 H 1.08999 * 113.61322 * 220.01810 * 28 16 15 48 48 H 1.08001 * 120.02671 * 179.71905 * 29 7 6 49 49 H 1.08000 * 119.97003 * 180.31882 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6841 -2.0606 1.3972 6 6 2.1431 -2.7139 2.5245 7 6 2.8532 -2.0144 3.4894 8 8 3.3062 -2.6551 4.5990 9 6 4.0304 -1.8719 5.5500 10 6 4.4491 -2.7449 6.7048 11 8 4.1567 -3.9220 6.7124 12 7 5.1486 -2.2178 7.7291 13 6 5.5562 -3.0665 8.8515 14 1 4.9244 -3.9471 8.9675 15 6 7.0613 -3.3811 8.8736 16 6 7.2364 -2.1017 9.7086 17 1 7.3942 -1.2054 9.1087 18 6 8.2383 -2.2421 10.8256 19 6 9.0704 -1.1854 11.1446 20 6 9.9890 -1.3142 12.1696 21 6 10.0752 -2.4993 12.8758 22 6 11.0762 -2.6395 13.9935 23 9 10.4898 -2.2363 15.1980 24 9 11.4781 -3.9757 14.0948 25 9 12.1900 -1.8365 13.7253 26 6 9.2423 -3.5557 12.5574 27 6 8.3237 -3.4270 11.5325 28 6 5.7789 -2.2914 10.1608 29 6 3.0955 -0.6587 3.3222 30 6 2.6396 -0.0112 2.1902 31 1 -0.3933 0.4417 -0.7650 32 1 1.7923 -0.5138 -0.8900 33 1 1.5878 2.4586 -1.2242 34 1 1.5614 2.4679 1.2085 35 1 1.1309 -2.6045 0.6459 36 1 1.9500 -3.7685 2.6540 37 1 3.3945 -1.0659 5.9164 38 1 4.9152 -1.4491 5.0742 39 1 5.3828 -1.2765 7.7229 40 1 7.5326 -3.3299 7.8922 41 1 7.3087 -4.2937 9.4159 42 1 8.9998 -0.2578 10.5960 43 1 10.6394 -0.4887 12.4185 44 1 9.3093 -4.4815 13.1094 45 1 7.6732 -4.2525 11.2835 46 1 5.6758 -2.9061 11.0551 47 1 5.2149 -1.3605 10.2185 48 1 3.6442 -0.1109 4.0741 49 1 2.8325 1.0431 2.0572 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705038_2989410.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:13:17 Heat of formation + Delta-G solvation = -162.153468 kcal Electronic energy + Delta-G solvation = -36068.714111 eV Core-core repulsion = 30514.003879 eV Total energy + Delta-G solvation = -5554.710232 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.138 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -51.22568 -48.75105 -48.70184 -41.78279 -41.27722 -40.39874 -39.22862 -38.62263 -37.29884 -34.83636 -32.85066 -32.35710 -32.06930 -31.80960 -29.67599 -27.74020 -26.69421 -26.19128 -25.07190 -24.14939 -23.88157 -22.58305 -22.25202 -21.74452 -20.24497 -19.58446 -19.51991 -19.46138 -19.38932 -18.56038 -18.33528 -17.56664 -17.38464 -16.93909 -16.78281 -16.62004 -16.32336 -15.89621 -15.68177 -15.60901 -15.56295 -15.52990 -15.43137 -15.16521 -15.11135 -14.94225 -14.86582 -14.67446 -14.49625 -14.43295 -14.30920 -14.09609 -14.07651 -13.96936 -13.61611 -13.44339 -13.39994 -13.20871 -12.78600 -12.46312 -12.36859 -12.18380 -11.91264 -11.87466 -11.76910 -11.70545 -11.24236 -11.01675 -10.45632 -10.17141 -10.04374 -10.02513 -9.91870 -9.21633 -4.90808 -0.12033 0.27812 0.28634 0.32277 1.33253 1.43271 1.47276 1.62581 1.62885 1.96744 2.42294 2.58672 2.62784 2.69824 2.97477 3.36101 3.44033 3.44704 3.52984 3.64567 3.69782 3.80353 3.84183 3.84711 3.89681 3.96312 3.99021 4.05882 4.12688 4.21384 4.30766 4.32232 4.40393 4.41624 4.46556 4.64150 4.69137 4.69930 4.79014 4.85011 4.87691 4.97880 5.02013 5.04665 5.13901 5.17024 5.20236 5.21126 5.25760 5.45597 5.51834 5.62221 5.70016 5.79242 6.27210 6.47572 6.61044 7.13826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.086 4.086 3 Si 0.769 3.231 4 C -0.124 4.124 5 C -0.062 4.062 6 C -0.166 4.166 7 C 0.121 3.879 8 O -0.319 6.319 9 C 0.035 3.965 10 C 0.516 3.484 11 O -0.572 6.572 12 N -0.691 5.691 13 C 0.114 3.886 14 H 0.082 0.918 15 C -0.144 4.144 16 C -0.068 4.068 17 H 0.125 0.875 18 C -0.038 4.038 19 C -0.116 4.116 20 C -0.078 4.078 21 C -0.202 4.202 22 C 0.505 3.495 23 F -0.184 7.184 24 F -0.183 7.183 25 F -0.182 7.182 26 C -0.079 4.079 27 C -0.122 4.122 28 C -0.123 4.123 29 C -0.199 4.199 30 C -0.079 4.079 31 H 0.394 0.606 32 H 0.091 0.909 33 H -0.290 1.290 34 H -0.294 1.294 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.423 0.577 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.159 0.841 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.149 0.851 46 H 0.100 0.900 47 H 0.094 0.906 48 H 0.168 0.832 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.110 7.184 -3.016 8.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.194 4.194 3 Si 0.674 3.326 4 C -0.124 4.124 5 C -0.080 4.080 6 C -0.185 4.185 7 C 0.076 3.924 8 O -0.232 6.232 9 C -0.043 4.043 10 C 0.302 3.698 11 O -0.451 6.451 12 N -0.345 5.345 13 C 0.008 3.992 14 H 0.100 0.900 15 C -0.182 4.182 16 C -0.086 4.086 17 H 0.143 0.857 18 C -0.039 4.039 19 C -0.133 4.133 20 C -0.096 4.096 21 C -0.204 4.204 22 C 0.451 3.549 23 F -0.166 7.166 24 F -0.165 7.165 25 F -0.163 7.163 26 C -0.097 4.097 27 C -0.140 4.140 28 C -0.161 4.161 29 C -0.217 4.217 30 C -0.097 4.097 31 H 0.244 0.756 32 H 0.109 0.891 33 H -0.218 1.218 34 H -0.221 1.221 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.261 0.739 40 H 0.091 0.909 41 H 0.115 0.885 42 H 0.177 0.823 43 H 0.160 0.840 44 H 0.157 0.843 45 H 0.167 0.833 46 H 0.119 0.881 47 H 0.113 0.887 48 H 0.185 0.815 49 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.794 6.651 -2.372 7.286 hybrid contribution -0.770 -0.133 -0.020 0.782 sum 1.024 6.517 -2.393 7.018 Atomic orbital electron populations 1.86555 1.18855 1.80701 1.50964 1.25035 0.83834 1.12103 0.98441 0.94181 0.90137 0.71851 0.76408 1.19437 1.01655 0.94232 0.97113 1.20934 0.96569 0.94108 0.96375 1.20623 1.02341 1.01138 0.94395 1.19178 0.94790 0.91865 0.86548 1.86127 1.69242 1.38341 1.29535 1.22773 0.99588 0.93576 0.88323 1.20545 0.77495 0.87914 0.83845 1.90774 1.56030 1.18930 1.79328 1.45315 1.55489 1.14115 1.19575 1.21859 0.96043 0.94775 0.86519 0.89971 1.23578 0.95351 0.98378 1.00921 1.21735 0.92637 1.00031 0.94182 0.85663 1.20157 0.95169 0.93080 0.95449 1.21362 0.94705 1.00152 0.97092 1.21173 0.98113 0.95777 0.94534 1.20021 1.01323 0.99302 0.99721 1.18550 0.80549 0.73376 0.82381 1.93217 1.84009 1.90513 1.48842 1.93182 1.91573 1.35191 1.96527 1.93183 1.55500 1.73863 1.93795 1.21111 0.93749 0.97701 0.97138 1.21247 0.98716 0.98800 0.95195 1.23383 0.94652 1.01829 0.96257 1.21481 1.06371 0.92770 1.01083 1.21054 0.96063 1.00124 0.92428 0.75626 0.89104 1.21776 1.22110 0.84743 0.85358 0.85733 0.85180 0.73899 0.90908 0.88506 0.82295 0.83969 0.84331 0.83319 0.88144 0.88745 0.81506 0.83349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.27 12.81 -148.98 -1.91 -3.18 16 2 C -0.09 0.09 2.79 71.23 0.20 0.29 16 3 Si 0.77 -2.75 29.84 68.60 2.05 -0.71 16 4 C -0.12 -0.23 5.39 -19.85 -0.11 -0.34 16 5 C -0.06 -0.23 9.68 22.26 0.22 -0.02 16 6 C -0.17 -0.87 9.99 22.37 0.22 -0.65 16 7 C 0.12 0.41 6.69 22.51 0.15 0.56 16 8 O -0.32 -1.62 9.67 -73.33 -0.71 -2.33 16 9 C 0.04 -0.18 5.22 71.24 0.37 0.20 16 10 C 0.52 0.21 7.91 87.66 0.69 0.90 16 11 O -0.57 -7.29 16.10 15.99 0.26 -7.03 16 12 N -0.69 5.23 5.27 -440.04 -2.32 2.91 16 13 C 0.11 -0.64 4.32 45.52 0.20 -0.45 16 14 H 0.08 0.03 7.46 -2.39 -0.02 0.01 16 15 C -0.14 1.00 7.26 31.12 0.23 1.23 16 16 C -0.07 0.71 3.86 -11.01 -0.04 0.67 16 17 H 0.13 -1.82 8.09 -2.39 -0.02 -1.84 16 18 C -0.04 0.25 5.29 -19.86 -0.11 0.15 16 19 C -0.12 0.71 9.71 22.27 0.22 0.93 16 20 C -0.08 0.18 9.40 22.27 0.21 0.39 16 21 C -0.20 -0.15 5.45 -19.87 -0.11 -0.26 16 22 C 0.51 1.90 3.36 71.23 0.24 2.14 16 23 F -0.18 -1.04 17.30 44.97 0.78 -0.26 16 24 F -0.18 -0.96 16.46 44.97 0.74 -0.22 16 25 F -0.18 -0.86 16.46 44.97 0.74 -0.12 16 26 C -0.08 0.10 9.40 22.27 0.21 0.31 16 27 C -0.12 0.56 8.61 22.27 0.19 0.75 16 28 C -0.12 1.24 7.29 31.12 0.23 1.46 16 29 C -0.20 0.45 9.04 22.37 0.20 0.65 16 30 C -0.08 0.10 8.66 22.25 0.19 0.29 16 31 H 0.39 -2.26 8.74 -74.06 -0.65 -2.90 16 32 H 0.09 -0.41 7.96 -2.39 -0.02 -0.43 16 33 H -0.29 -0.32 7.11 99.48 0.71 0.39 16 34 H -0.29 -0.79 7.05 99.48 0.70 -0.09 16 35 H 0.13 0.27 8.06 -2.92 -0.02 0.25 16 36 H 0.13 0.68 8.06 -2.91 -0.02 0.66 16 37 H 0.13 -1.39 7.65 -2.39 -0.02 -1.40 16 38 H 0.13 -1.57 7.67 -2.39 -0.02 -1.59 16 39 H 0.42 -6.58 8.70 -92.71 -0.81 -7.39 16 40 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 41 H 0.10 -0.64 6.31 -2.38 -0.02 -0.66 16 42 H 0.16 -1.83 8.05 -2.91 -0.02 -1.86 16 43 H 0.14 -0.62 7.60 -2.91 -0.02 -0.64 16 44 H 0.14 -0.37 7.61 -2.91 -0.02 -0.39 16 45 H 0.15 -1.16 6.66 -2.91 -0.02 -1.18 16 46 H 0.10 -0.93 7.72 -2.38 -0.02 -0.95 16 47 H 0.09 -1.15 8.14 -2.39 -0.02 -1.17 16 48 H 0.17 -1.72 6.30 -2.91 -0.02 -1.74 16 49 H 0.15 -0.85 4.86 -2.91 -0.01 -0.87 16 Total: 0.00 -28.76 421.18 2.85 -25.91 By element: Atomic # 1 Polarization: -23.82 SS G_CDS: -0.38 Total: -24.19 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 3.60 Total: 9.21 kcal Atomic # 7 Polarization: 5.23 SS G_CDS: -2.32 Total: 2.91 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -2.36 Total: -12.53 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 2.26 Total: -0.60 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: 2.05 Total: -0.71 kcal Total: -28.76 2.85 -25.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705038_2989410.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.241 kcal (2) G-P(sol) polarization free energy of solvation -28.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds