Wall clock time and date at job start Mon Mar 8 2021 05:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35988 * 116.99880 * 2 1 4 4 C 1.39160 * 120.07353 * 180.02562 * 3 2 1 5 5 O 1.35988 * 120.07112 * 359.97438 * 4 3 2 6 6 C 1.42900 * 117.00061 * 179.72750 * 5 4 3 7 7 C 1.50705 * 109.47278 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99603 * 0.02562 * 7 6 5 9 9 N 1.34769 * 119.99890 * 179.97438 * 7 6 5 10 10 C 1.46507 * 120.00078 * 180.02562 * 9 7 6 11 11 H 1.09002 * 112.84616 * 23.80071 * 10 9 7 12 12 C 1.53778 * 113.61526 * 155.00228 * 10 9 7 13 13 C 1.53784 * 87.07904 * 89.20107 * 12 10 9 14 14 H 1.09000 * 113.61667 * 270.79702 * 13 12 10 15 15 C 1.50706 * 113.61119 * 139.97822 * 13 12 10 16 16 C 1.38233 * 120.00109 * 301.25342 * 15 13 12 17 17 C 1.38237 * 119.99743 * 179.80918 * 16 15 13 18 18 C 1.38233 * 120.00125 * 0.40204 * 17 16 15 19 19 C 1.50696 * 120.00204 * 179.83556 * 18 17 16 20 20 F 1.39903 * 109.47021 * 270.01969 * 19 18 17 21 21 F 1.39901 * 109.47343 * 30.01907 * 19 18 17 22 22 F 1.39903 * 109.47110 * 150.02087 * 19 18 17 23 23 C 1.38238 * 120.00012 * 359.85160 * 18 17 16 24 24 C 1.38235 * 120.00123 * 359.95693 * 23 18 17 25 25 C 1.53778 * 87.17473 * 25.39065 * 13 12 10 26 26 C 1.38559 * 119.85428 * 179.72977 * 4 3 2 27 27 C 1.38240 * 120.00195 * 0.26778 * 26 4 3 28 28 C 1.38258 * 120.14729 * 0.02562 * 27 26 4 29 29 C 1.50704 * 119.92866 * 179.97438 * 28 27 26 30 30 O 1.42893 * 109.47140 * 244.99740 * 29 28 27 31 31 Si 1.86292 * 109.47072 * 5.00147 * 29 28 27 32 32 C 1.38239 * 120.14448 * 359.97438 * 28 27 26 33 33 H 1.09007 * 109.47109 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47054 * 299.99473 * 1 2 3 35 35 H 1.09001 * 109.47536 * 59.99983 * 1 2 3 36 36 H 1.09001 * 109.47030 * 60.00507 * 6 5 4 37 37 H 1.08995 * 109.47330 * 300.00553 * 6 5 4 38 38 H 0.97003 * 120.00593 * 0.02562 * 9 7 6 39 39 H 1.08996 * 113.61595 * 334.65224 * 12 10 9 40 40 H 1.08999 * 113.61202 * 203.74472 * 12 10 9 41 41 H 1.08004 * 119.99934 * 0.02562 * 16 15 13 42 42 H 1.07999 * 119.99896 * 180.23009 * 17 16 15 43 43 H 1.08000 * 120.00524 * 179.97438 * 23 18 17 44 44 H 1.07999 * 120.00181 * 179.97438 * 24 23 18 45 45 H 1.09000 * 113.61584 * 89.15548 * 25 13 12 46 46 H 1.09001 * 113.61484 * 220.06156 * 25 13 12 47 47 H 1.08004 * 120.00455 * 180.25337 * 26 4 3 48 48 H 1.08004 * 119.93260 * 180.02562 * 27 26 4 49 49 H 1.08996 * 109.46778 * 125.00027 * 29 28 27 50 50 H 0.96709 * 113.99838 * 59.99943 * 30 29 28 51 51 H 1.48507 * 110.00374 * 58.67825 * 31 29 28 52 52 H 1.48499 * 109.99940 * 179.97438 * 31 29 28 53 53 H 1.07999 * 120.00360 * 179.97438 * 32 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4359 1.2863 -0.0005 5 8 4.1795 0.1477 -0.0005 6 6 5.6002 0.3007 -0.0072 7 6 6.2518 -1.0582 -0.0068 8 8 5.5669 -2.0591 -0.0018 9 7 7.5956 -1.1612 -0.0130 10 6 8.2291 -2.4822 -0.0132 11 1 7.5814 -3.2621 -0.4138 12 6 9.6440 -2.4868 -0.6153 13 6 10.1622 -2.1819 0.8001 14 1 10.2214 -1.1167 1.0234 15 6 11.4247 -2.9251 1.1538 16 6 11.4439 -4.3070 1.1269 17 6 12.6030 -4.9885 1.4475 18 6 13.7406 -4.2883 1.8031 19 6 15.0033 -5.0313 2.1562 20 9 15.0198 -5.2962 3.5298 21 9 15.0483 -6.2371 1.4482 22 9 16.1138 -4.2504 1.8184 23 6 13.7200 -2.9064 1.8351 24 6 12.5620 -2.2248 1.5106 25 6 8.8838 -2.8523 1.3302 26 6 4.0602 2.5233 -0.0062 27 6 3.3029 3.6798 -0.0057 28 6 1.9223 3.6057 0.0010 29 6 1.1015 4.8697 0.0021 30 8 0.3703 4.9617 1.2263 31 14 2.2300 6.3430 -0.1596 32 6 1.2931 2.3748 0.0066 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 -0.3634 0.5138 -0.8900 36 1 5.9103 0.8529 0.8800 37 1 5.9026 0.8480 -0.8999 38 1 8.1434 -0.3607 -0.0173 39 1 9.8182 -1.6800 -1.3272 40 1 9.9544 -3.4608 -0.9935 41 1 10.5542 -4.8541 0.8520 42 1 12.6191 -6.0681 1.4229 43 1 14.6086 -2.3593 2.1132 44 1 12.5457 -1.1452 1.5360 45 1 8.9860 -3.9265 1.4848 46 1 8.4451 -2.3402 2.1866 47 1 5.1385 2.5840 -0.0108 48 1 3.7907 4.6434 -0.0105 49 1 0.4054 4.8514 -0.8364 50 1 0.9274 4.9825 2.0165 51 1 3.0194 6.2431 -1.4136 52 1 1.4327 7.5958 -0.1604 53 1 0.2146 2.3196 0.0123 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705038_60476.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:14:50 Heat of formation + Delta-G solvation = -197.555288 kcal Electronic energy + Delta-G solvation = -40923.595230 eV Core-core repulsion = 34893.130048 eV Total energy + Delta-G solvation = -6030.465182 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 438.153 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -51.22280 -48.74738 -48.70040 -41.87724 -41.53510 -40.56600 -39.50809 -38.94950 -38.63069 -36.90502 -34.82201 -32.81281 -32.09571 -31.95538 -31.44134 -29.60642 -28.47010 -27.70765 -26.68779 -26.19472 -25.05536 -24.06093 -23.58107 -22.65118 -22.36802 -21.80899 -20.24250 -19.78110 -19.57726 -19.51330 -19.38957 -18.51384 -18.41121 -17.93920 -17.54497 -17.36606 -16.96473 -16.71149 -16.64918 -16.37042 -16.08797 -15.90856 -15.82937 -15.65863 -15.55349 -15.52185 -15.43922 -15.34627 -15.15801 -14.95045 -14.86361 -14.80180 -14.57986 -14.46826 -14.34240 -14.28896 -14.05554 -13.76460 -13.61135 -13.53931 -13.40589 -13.20413 -12.78729 -12.62321 -12.53326 -12.36157 -12.16677 -12.11312 -11.96454 -11.89427 -11.76391 -11.74631 -11.23766 -10.99820 -10.42439 -10.15805 -10.03850 -9.91289 -9.78441 -8.90614 -4.96437 -0.11659 0.17551 0.28809 0.29054 1.34401 1.45733 1.48480 1.63128 1.68490 2.01420 2.31208 2.42677 2.57079 2.57853 2.70075 2.97780 3.36316 3.45347 3.50201 3.53565 3.65389 3.69754 3.71723 3.84980 3.87745 3.90072 3.92597 3.97010 4.06321 4.14836 4.15140 4.22032 4.29258 4.29716 4.32808 4.36511 4.40833 4.50226 4.63645 4.65112 4.66573 4.69639 4.79410 4.85455 4.88333 5.01426 5.02710 5.05031 5.13243 5.14689 5.20510 5.21644 5.38231 5.46334 5.59973 5.63688 5.79677 5.97788 6.42813 6.55574 6.78734 7.16758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.335 6.335 3 C 0.075 3.925 4 C 0.085 3.915 5 O -0.315 6.315 6 C 0.034 3.966 7 C 0.514 3.486 8 O -0.573 6.573 9 N -0.690 5.690 10 C 0.113 3.887 11 H 0.080 0.920 12 C -0.123 4.123 13 C -0.067 4.067 14 H 0.126 0.874 15 C -0.038 4.038 16 C -0.122 4.122 17 C -0.079 4.079 18 C -0.202 4.202 19 C 0.505 3.495 20 F -0.185 7.185 21 F -0.183 7.183 22 F -0.182 7.182 23 C -0.078 4.078 24 C -0.115 4.115 25 C -0.144 4.144 26 C -0.158 4.158 27 C -0.108 4.108 28 C -0.120 4.120 29 C -0.077 4.077 30 O -0.558 6.558 31 Si 0.787 3.213 32 C -0.154 4.154 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.423 0.577 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.148 0.852 42 H 0.139 0.861 43 H 0.143 0.857 44 H 0.160 0.840 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.179 0.821 48 H 0.162 0.838 49 H 0.102 0.898 50 H 0.396 0.604 51 H -0.279 1.279 52 H -0.304 1.304 53 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.440 7.741 0.380 8.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.030 3.970 4 C 0.040 3.960 5 O -0.229 6.229 6 C -0.044 4.044 7 C 0.301 3.699 8 O -0.451 6.451 9 N -0.345 5.345 10 C 0.008 3.992 11 H 0.099 0.901 12 C -0.161 4.161 13 C -0.085 4.085 14 H 0.144 0.856 15 C -0.039 4.039 16 C -0.140 4.140 17 C -0.097 4.097 18 C -0.204 4.204 19 C 0.451 3.549 20 F -0.166 7.166 21 F -0.165 7.165 22 F -0.163 7.163 23 C -0.096 4.096 24 C -0.133 4.133 25 C -0.183 4.183 26 C -0.177 4.177 27 C -0.126 4.126 28 C -0.121 4.121 29 C -0.186 4.186 30 O -0.366 6.366 31 Si 0.693 3.307 32 C -0.173 4.173 33 H 0.129 0.871 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.262 0.738 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.161 0.839 44 H 0.178 0.822 45 H 0.114 0.886 46 H 0.091 0.909 47 H 0.196 0.804 48 H 0.179 0.821 49 H 0.120 0.880 50 H 0.246 0.754 51 H -0.206 1.206 52 H -0.232 1.232 53 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.716 7.282 -0.486 7.788 hybrid contribution -0.233 -0.723 -0.174 0.779 sum 2.483 6.560 -0.660 7.045 Atomic orbital electron populations 1.23275 0.76878 1.05191 1.02027 1.86185 1.22937 1.26694 1.89113 1.18686 0.90016 0.85536 1.02758 1.18581 0.88112 0.86601 1.02704 1.86222 1.18324 1.29041 1.89290 1.22798 0.79279 0.95118 1.07186 1.20581 0.83031 0.90832 0.75474 1.90783 1.64145 1.40254 1.49925 1.45304 1.04965 1.09640 1.74557 1.21893 0.94230 0.85289 0.97805 0.90142 1.23379 0.92130 1.04524 0.96042 1.21734 0.89535 1.00614 0.96618 0.85576 1.20161 0.95421 0.93532 0.94741 1.21239 0.98002 0.94398 1.00337 1.21107 0.91674 1.01053 0.95883 1.20022 0.93244 0.95763 1.11342 1.18552 0.84809 0.77234 0.74264 1.93218 1.96854 1.94261 1.32307 1.93182 1.96802 1.47816 1.78657 1.93183 1.56408 1.74576 1.92137 1.21178 1.00153 0.91826 0.96431 1.21369 0.91209 1.01722 0.98965 1.23604 0.95208 1.02100 0.97339 1.21404 1.02376 0.89211 1.04668 1.21014 0.92166 0.99049 1.00329 1.20201 0.94603 0.94737 1.02520 1.25276 1.01091 1.02379 0.89873 1.86469 1.37582 1.96633 1.15902 0.93688 0.79280 0.72438 0.85301 1.21010 1.00440 0.90681 1.05124 0.87073 0.91723 0.91959 0.85111 0.85472 0.73847 0.88648 0.88186 0.83394 0.84365 0.83941 0.82228 0.88635 0.90933 0.80384 0.82144 0.88025 0.75445 1.20599 1.23234 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.81 113.37 1.11 1.16 16 2 O -0.33 -3.58 10.28 -79.54 -0.82 -4.40 16 3 C 0.08 0.56 6.70 22.57 0.15 0.71 16 4 C 0.09 0.37 6.70 22.57 0.15 0.52 16 5 O -0.32 -2.22 9.45 -67.00 -0.63 -2.85 16 6 C 0.03 -0.16 5.22 71.24 0.37 0.22 16 7 C 0.51 0.62 7.91 87.66 0.69 1.31 16 8 O -0.57 -8.16 16.10 15.99 0.26 -7.90 16 9 N -0.69 5.02 5.26 -439.74 -2.32 2.71 16 10 C 0.11 -0.59 4.33 45.58 0.20 -0.40 16 11 H 0.08 0.08 7.46 -2.39 -0.02 0.07 16 12 C -0.12 1.22 7.29 31.12 0.23 1.45 16 13 C -0.07 0.70 3.86 -11.01 -0.04 0.65 16 14 H 0.13 -1.85 8.09 -2.39 -0.02 -1.87 16 15 C -0.04 0.25 5.29 -19.86 -0.11 0.14 16 16 C -0.12 0.54 8.55 22.27 0.19 0.73 16 17 C -0.08 0.09 9.40 22.27 0.21 0.30 16 18 C -0.20 -0.15 5.45 -19.87 -0.11 -0.26 16 19 C 0.51 1.91 3.36 71.23 0.24 2.14 16 20 F -0.18 -1.09 17.30 44.97 0.78 -0.31 16 21 F -0.18 -0.95 16.46 44.97 0.74 -0.21 16 22 F -0.18 -0.84 16.46 44.97 0.74 -0.10 16 23 C -0.08 0.19 9.40 22.27 0.21 0.40 16 24 C -0.12 0.72 9.71 22.27 0.22 0.94 16 25 C -0.14 0.95 7.27 31.18 0.23 1.18 16 26 C -0.16 0.67 9.04 22.35 0.20 0.87 16 27 C -0.11 0.50 8.66 22.27 0.19 0.70 16 28 C -0.12 0.07 5.35 -19.86 -0.11 -0.03 16 29 C -0.08 0.13 2.80 71.24 0.20 0.33 16 30 O -0.56 0.33 12.83 -148.98 -1.91 -1.58 16 31 Si 0.79 -3.77 29.79 68.60 2.04 -1.73 16 32 C -0.15 -0.53 8.67 22.35 0.19 -0.33 16 33 H 0.11 -0.04 8.14 -2.38 -0.02 -0.06 16 34 H 0.06 0.01 7.65 -2.39 -0.02 -0.01 16 35 H 0.06 0.01 7.68 -2.39 -0.02 -0.01 16 36 H 0.13 -1.60 7.66 -2.39 -0.02 -1.62 16 37 H 0.13 -1.48 7.66 -2.39 -0.02 -1.50 16 38 H 0.42 -6.62 8.70 -92.71 -0.81 -7.43 16 39 H 0.09 -1.17 8.14 -2.39 -0.02 -1.19 16 40 H 0.10 -0.91 7.66 -2.39 -0.02 -0.93 16 41 H 0.15 -1.12 6.72 -2.91 -0.02 -1.13 16 42 H 0.14 -0.35 7.60 -2.91 -0.02 -0.37 16 43 H 0.14 -0.63 7.60 -2.91 -0.02 -0.65 16 44 H 0.16 -1.87 8.05 -2.91 -0.02 -1.90 16 45 H 0.10 -0.58 6.38 -2.39 -0.02 -0.60 16 46 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 47 H 0.18 -2.32 6.30 -2.91 -0.02 -2.34 16 48 H 0.16 -1.75 4.89 -2.91 -0.01 -1.76 16 49 H 0.10 0.00 7.96 -2.39 -0.02 -0.02 16 50 H 0.40 -3.49 8.70 -74.05 -0.64 -4.13 16 51 H -0.28 0.26 7.11 99.48 0.71 0.97 16 52 H -0.30 -1.06 7.11 99.48 0.71 -0.36 16 53 H 0.14 0.33 6.30 -2.91 -0.02 0.31 16 Total: 0.00 -33.67 450.45 3.11 -30.57 By element: Atomic # 1 Polarization: -26.52 SS G_CDS: -0.40 Total: -26.91 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 4.62 Total: 12.72 kcal Atomic # 7 Polarization: 5.02 SS G_CDS: -2.32 Total: 2.71 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -3.11 Total: -16.74 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 2.26 Total: -0.61 kcal Atomic # 14 Polarization: -3.77 SS G_CDS: 2.04 Total: -1.73 kcal Total: -33.67 3.11 -30.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705038_60476.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.990 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds