Wall clock time and date at job start Mon Mar 8 2021 05:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86305 * 109.46978 * 2 1 4 4 C 1.50698 * 109.46819 * 240.00145 * 2 1 3 5 5 C 1.38231 * 120.00222 * 300.00019 * 4 2 1 6 6 C 1.38236 * 120.00146 * 180.02562 * 5 4 2 7 7 C 1.38232 * 120.00112 * 359.95563 * 6 5 4 8 8 C 1.50696 * 120.00111 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47498 * 89.99837 * 8 7 6 10 10 O 1.21277 * 119.99733 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99797 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99418 * 180.02562 * 11 9 8 13 13 H 1.09000 * 112.85288 * 23.80409 * 12 11 9 14 14 C 1.53783 * 113.61007 * 154.99668 * 12 11 9 15 15 C 1.53786 * 87.08050 * 89.11544 * 14 12 11 16 16 H 1.09002 * 113.61357 * 270.88070 * 15 14 12 17 17 C 1.50697 * 113.61519 * 140.06465 * 15 14 12 18 18 C 1.38442 * 120.01482 * 121.25138 * 17 15 14 19 19 F 1.35098 * 120.02351 * 0.02562 * 18 17 15 20 20 C 1.38483 * 119.94812 * 179.72219 * 18 17 15 21 21 C 1.38184 * 119.96970 * 0.57461 * 20 18 17 22 22 C 1.38257 * 120.02859 * 359.70304 * 21 20 18 23 23 C 1.38224 * 120.05600 * 359.97438 * 22 21 20 24 24 C 1.53781 * 87.17350 * 25.47154 * 15 14 12 25 25 C 1.38238 * 119.99910 * 0.27211 * 7 6 5 26 26 C 1.38237 * 119.99950 * 119.97752 * 4 2 1 27 27 H 0.96701 * 114.00109 * 299.99698 * 1 2 3 28 28 H 1.08998 * 109.47223 * 120.00469 * 2 1 3 29 29 H 1.48500 * 109.99616 * 178.68148 * 3 2 1 30 30 H 1.48501 * 109.99788 * 300.00158 * 3 2 1 31 31 H 1.08005 * 119.99991 * 359.97438 * 5 4 2 32 32 H 1.08002 * 120.00138 * 179.97438 * 6 5 4 33 33 H 1.08994 * 109.47199 * 329.99380 * 8 7 6 34 34 H 1.09004 * 109.46878 * 210.00192 * 8 7 6 35 35 H 0.96995 * 120.00261 * 359.97438 * 11 9 8 36 36 H 1.08992 * 113.61796 * 334.56401 * 14 12 11 37 37 H 1.09000 * 113.61157 * 203.65821 * 14 12 11 38 38 H 1.08000 * 120.01233 * 180.29485 * 20 18 17 39 39 H 1.08001 * 119.97686 * 179.72106 * 21 20 18 40 40 H 1.08003 * 119.97236 * 180.02562 * 22 21 20 41 41 H 1.07999 * 119.98991 * 180.02562 * 23 22 21 42 42 H 1.08999 * 113.61567 * 89.07405 * 24 15 14 43 43 H 1.08998 * 113.61196 * 219.97759 * 24 15 14 44 44 H 1.08002 * 119.99831 * 179.72263 * 25 7 6 45 45 H 1.08002 * 119.99835 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.5973 -2.0338 -1.4493 6 6 2.0585 -2.6855 -2.5778 7 6 2.8528 -2.0136 -3.4879 8 6 3.3551 -2.7240 -4.7184 9 6 2.3622 -2.5511 -5.8388 10 8 1.3465 -1.9141 -5.6560 11 7 2.6026 -3.1051 -7.0437 12 6 1.6376 -2.9365 -8.1330 13 1 1.0113 -2.0528 -8.0107 14 6 2.2614 -3.0605 -9.5332 15 6 1.9747 -4.5686 -9.4413 16 1 2.7849 -5.1402 -8.9885 17 6 1.4855 -5.1699 -10.7336 18 6 2.1897 -6.2038 -11.3266 19 9 3.3155 -6.6747 -10.7470 20 6 1.7357 -6.7593 -12.5112 21 6 0.5871 -6.2730 -13.1060 22 6 -0.1122 -5.2366 -12.5158 23 6 0.3363 -4.6858 -11.3300 24 6 0.8451 -4.2167 -8.4590 25 6 3.1907 -0.6916 -3.2667 26 6 2.7256 -0.0384 -2.1407 27 1 -0.3933 0.4417 0.7651 28 1 1.7924 -0.5139 0.8899 29 1 3.5346 1.7703 0.0321 30 1 1.5614 2.4679 -1.2085 31 1 0.9767 -2.5588 -0.7382 32 1 1.7979 -3.7197 -2.7485 33 1 3.4766 -3.7851 -4.5011 34 1 4.3152 -2.3017 -5.0152 35 1 3.4148 -3.6149 -7.1898 36 1 3.3238 -2.8189 -9.5608 37 1 1.6907 -2.5543 -10.3117 38 1 2.2816 -7.5691 -12.9723 39 1 0.2354 -6.7031 -14.0321 40 1 -1.0100 -4.8575 -12.9812 41 1 -0.2110 -3.8765 -10.8696 42 1 -0.1120 -4.0260 -8.9443 43 1 0.7651 -4.9079 -7.6200 44 1 3.8151 -0.1679 -3.9756 45 1 2.9859 0.9958 -1.9701 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705094_12335836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:16:32 Heat of formation + Delta-G solvation = -30.880952 kcal Electronic energy + Delta-G solvation = -28030.108080 eV Core-core repulsion = 23894.218013 eV Total energy + Delta-G solvation = -4135.890067 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.94014 -41.65999 -40.84326 -39.99900 -38.77124 -37.61831 -34.70722 -34.16149 -32.10614 -31.89377 -31.44421 -29.81258 -26.77847 -26.53913 -25.53286 -23.99519 -23.82760 -22.82205 -22.30438 -21.44734 -20.20628 -18.85000 -18.41683 -18.19085 -17.74319 -17.43944 -17.11978 -16.89147 -16.80745 -16.65936 -16.35977 -16.02044 -15.44887 -15.28334 -15.14490 -15.06520 -14.86458 -14.64083 -14.46907 -14.16144 -13.96399 -13.87258 -13.53980 -13.51401 -13.26769 -13.13890 -12.99766 -12.90568 -12.41259 -12.34970 -12.09821 -11.94690 -11.85465 -11.79271 -11.29266 -11.08561 -10.37194 -10.15256 -10.03547 -9.89942 -9.69417 -9.60071 -4.98994 0.09496 0.15702 0.22061 0.29104 1.27132 1.54158 1.59372 1.94803 2.04556 2.57980 2.63696 3.24395 3.39060 3.39424 3.53974 3.56626 3.60934 3.70804 3.79755 3.81247 3.89372 3.92323 3.97060 4.07047 4.14266 4.22687 4.31155 4.33867 4.36278 4.43586 4.51903 4.58299 4.58930 4.69207 4.78165 4.85063 4.89528 4.92649 4.94158 4.95806 5.06646 5.09897 5.21892 5.22689 5.37995 5.39491 5.44132 5.46331 5.56528 5.87196 5.92903 6.47175 6.88274 7.19104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.080 4.080 3 Si 0.778 3.222 4 C -0.097 4.097 5 C -0.102 4.102 6 C -0.111 4.111 7 C -0.071 4.071 8 C -0.097 4.097 9 C 0.516 3.484 10 O -0.578 6.578 11 N -0.703 5.703 12 C 0.117 3.883 13 H 0.086 0.914 14 C -0.122 4.122 15 C -0.071 4.071 16 H 0.100 0.900 17 C -0.112 4.112 18 C 0.073 3.927 19 F -0.150 7.150 20 C -0.163 4.163 21 C -0.099 4.099 22 C -0.128 4.128 23 C -0.096 4.096 24 C -0.138 4.138 25 C -0.111 4.111 26 C -0.146 4.146 27 H 0.403 0.597 28 H 0.097 0.903 29 H -0.285 1.285 30 H -0.305 1.305 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.417 0.583 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.142 0.858 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.101 0.899 43 H 0.067 0.933 44 H 0.137 0.863 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 -1.237 -0.039 1.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.190 4.190 3 Si 0.684 3.316 4 C -0.097 4.097 5 C -0.120 4.120 6 C -0.129 4.129 7 C -0.072 4.072 8 C -0.136 4.136 9 C 0.304 3.696 10 O -0.457 6.457 11 N -0.355 5.355 12 C 0.011 3.989 13 H 0.104 0.896 14 C -0.160 4.160 15 C -0.089 4.089 16 H 0.118 0.882 17 C -0.113 4.113 18 C 0.054 3.946 19 F -0.129 7.129 20 C -0.182 4.182 21 C -0.117 4.117 22 C -0.146 4.146 23 C -0.113 4.113 24 C -0.176 4.176 25 C -0.129 4.129 26 C -0.164 4.164 27 H 0.254 0.746 28 H 0.114 0.886 29 H -0.212 1.212 30 H -0.234 1.234 31 H 0.153 0.847 32 H 0.159 0.841 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.254 0.746 36 H 0.104 0.896 37 H 0.124 0.876 38 H 0.160 0.840 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.166 0.834 42 H 0.120 0.880 43 H 0.086 0.914 44 H 0.155 0.845 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.371 -0.530 -0.836 1.691 hybrid contribution 0.620 -0.879 -0.334 1.126 sum 1.991 -1.409 -1.170 2.705 Atomic orbital electron populations 1.86456 1.17352 1.82379 1.51374 1.24859 0.85801 1.11023 0.97307 0.94568 0.77248 0.75326 0.84430 1.19736 0.98362 0.95146 0.96428 1.21170 0.98733 0.93932 0.98186 1.21350 0.96636 1.01006 0.93898 1.19575 0.97872 0.94016 0.95718 1.20762 0.98907 1.04575 0.89394 1.20999 0.86964 0.77703 0.83971 1.90753 1.30003 1.42092 1.82862 1.45607 1.24641 1.54929 1.10303 1.21851 0.91690 0.98625 0.86764 0.89564 1.23375 1.02763 0.94176 0.95718 1.21493 0.99095 0.96272 0.92030 0.88211 1.19904 0.96785 0.96562 0.98022 1.17890 0.85117 0.97060 0.94531 1.91448 1.49501 1.87788 1.84174 1.21424 0.99216 1.02349 0.95199 1.21367 0.93651 0.96191 1.00485 1.21582 1.00940 0.96486 0.95622 1.21183 0.94753 0.99965 0.95432 1.23585 0.98157 0.97207 0.98669 1.21146 1.00265 0.94609 0.96887 1.20981 1.00539 0.98870 0.95969 0.74584 0.88566 1.21217 1.23355 0.84651 0.84082 0.84770 0.84970 0.74602 0.89641 0.87634 0.84004 0.82972 0.83141 0.83423 0.88029 0.91446 0.84500 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.93 12.74 -148.98 -1.90 -3.83 16 2 C -0.08 -0.23 2.81 71.24 0.20 -0.03 16 3 Si 0.78 0.81 29.79 68.60 2.04 2.86 16 4 C -0.10 -0.85 5.42 -19.87 -0.11 -0.96 16 5 C -0.10 -0.79 9.61 22.27 0.21 -0.58 16 6 C -0.11 -0.65 9.70 22.27 0.22 -0.43 16 7 C -0.07 -0.36 4.37 -19.87 -0.09 -0.45 16 8 C -0.10 0.23 5.83 29.10 0.17 0.40 16 9 C 0.52 1.85 7.82 87.66 0.69 2.53 16 10 O -0.58 -8.31 15.63 -3.02 -0.05 -8.36 16 11 N -0.70 1.38 5.26 -439.59 -2.31 -0.94 16 12 C 0.12 -0.05 4.33 45.61 0.20 0.15 16 13 H 0.09 0.36 7.47 -2.39 -0.02 0.34 16 14 C -0.12 0.44 7.29 31.12 0.23 0.67 16 15 C -0.07 0.13 3.78 -11.01 -0.04 0.09 16 16 H 0.10 -0.16 7.43 -2.39 -0.02 -0.18 16 17 C -0.11 -0.08 5.30 -19.82 -0.10 -0.19 16 18 C 0.07 0.26 7.25 22.38 0.16 0.42 16 19 F -0.15 -0.89 16.36 44.97 0.74 -0.15 16 20 C -0.16 -0.18 10.03 22.32 0.22 0.05 16 21 C -0.10 0.19 10.04 22.26 0.22 0.42 16 22 C -0.13 0.36 10.04 22.27 0.22 0.58 16 23 C -0.10 0.18 8.54 22.26 0.19 0.37 16 24 C -0.14 0.16 7.28 31.21 0.23 0.38 16 25 C -0.11 -0.81 9.70 22.27 0.22 -0.59 16 26 C -0.15 -1.41 8.67 22.27 0.19 -1.21 16 27 H 0.40 -3.14 8.74 -74.06 -0.65 -3.79 16 28 H 0.10 -0.19 7.96 -2.39 -0.02 -0.21 16 29 H -0.28 -1.59 7.11 99.48 0.71 -0.88 16 30 H -0.31 -3.01 7.11 99.48 0.71 -2.30 16 31 H 0.14 0.68 8.06 -2.91 -0.02 0.65 16 32 H 0.14 0.19 8.06 -2.91 -0.02 0.17 16 33 H 0.13 -1.06 8.09 -2.39 -0.02 -1.08 16 34 H 0.13 -1.01 8.08 -2.38 -0.02 -1.03 16 35 H 0.42 -3.30 8.70 -92.71 -0.81 -4.11 16 36 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.11 -0.48 7.64 -2.39 -0.02 -0.50 16 38 H 0.14 -0.19 8.06 -2.91 -0.02 -0.21 16 39 H 0.15 -0.99 8.06 -2.91 -0.02 -1.01 16 40 H 0.15 -1.08 8.06 -2.91 -0.02 -1.11 16 41 H 0.15 -0.80 6.72 -2.91 -0.02 -0.82 16 42 H 0.10 -0.24 6.39 -2.39 -0.02 -0.26 16 43 H 0.07 0.05 8.14 -2.39 -0.02 0.04 16 44 H 0.14 0.43 8.06 -2.91 -0.02 0.41 16 45 H 0.11 1.00 4.88 -2.91 -0.01 0.99 16 Total: 0.00 -25.49 378.57 1.37 -24.12 By element: Atomic # 1 Polarization: -14.93 SS G_CDS: -0.38 Total: -15.31 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 3.23 Total: 1.61 kcal Atomic # 7 Polarization: 1.38 SS G_CDS: -2.31 Total: -0.94 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -1.95 Total: -12.19 kcal Atomic # 9 Polarization: -0.89 SS G_CDS: 0.74 Total: -0.15 kcal Atomic # 14 Polarization: 0.81 SS G_CDS: 2.04 Total: 2.86 kcal Total: -25.49 1.37 -24.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705094_12335836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.763 kcal (2) G-P(sol) polarization free energy of solvation -25.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds