Wall clock time and date at job start Mon Mar 8 2021 05:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.46868 * 2 1 4 4 C 1.50697 * 109.47086 * 119.99942 * 2 1 3 5 5 C 1.38401 * 119.82651 * 64.99784 * 4 2 1 6 6 C 1.37895 * 120.17011 * 179.97438 * 5 4 2 7 7 C 1.39831 * 119.82533 * 0.02562 * 6 5 4 8 8 C 1.47206 * 120.17048 * 179.97438 * 7 6 5 9 9 C 1.34809 * 120.00112 * 180.02562 * 8 7 6 10 10 C 1.46436 * 119.99887 * 179.97438 * 9 8 7 11 11 O 1.21699 * 119.99829 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99804 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99822 * 179.97438 * 12 10 9 14 14 H 1.09003 * 112.85170 * 25.33453 * 13 12 10 15 15 C 1.53782 * 113.61372 * 156.53403 * 13 12 10 16 16 C 1.53776 * 87.08315 * 89.11555 * 15 13 12 17 17 H 1.08994 * 113.61055 * 270.79826 * 16 15 13 18 18 C 1.50700 * 113.61461 * 139.98419 * 16 15 13 19 19 C 1.38434 * 120.01503 * 119.99640 * 18 16 15 20 20 F 1.35101 * 120.02609 * 0.02562 * 19 18 16 21 21 C 1.38486 * 119.94895 * 179.97438 * 19 18 16 22 22 C 1.38181 * 119.97253 * 0.02562 * 21 19 18 23 23 C 1.38263 * 120.02588 * 0.02562 * 22 21 19 24 24 C 1.38225 * 120.05394 * 359.71833 * 23 22 21 25 25 C 1.53789 * 113.61441 * 254.13763 * 13 12 10 26 26 C 1.39837 * 119.66296 * 359.97329 * 7 6 5 27 27 C 1.37892 * 119.82608 * 0.02928 * 26 7 6 28 28 H 0.96699 * 113.99951 * 60.00544 * 1 2 3 29 29 H 1.08995 * 109.46769 * 240.00321 * 2 1 3 30 30 H 1.48500 * 110.00202 * 59.99906 * 3 2 1 31 31 H 1.48501 * 109.99782 * 181.32025 * 3 2 1 32 32 H 1.08002 * 119.91530 * 359.97438 * 5 4 2 33 33 H 1.08003 * 120.08223 * 179.72512 * 6 5 4 34 34 H 1.08009 * 119.99861 * 359.97438 * 8 7 6 35 35 H 1.07995 * 120.00226 * 359.97438 * 9 8 7 36 36 H 0.96996 * 119.99878 * 0.02562 * 12 10 9 37 37 H 1.09001 * 113.61298 * 203.66606 * 15 13 12 38 38 H 1.09000 * 113.61350 * 334.47927 * 15 13 12 39 39 H 1.08000 * 120.01272 * 179.97438 * 21 19 18 40 40 H 1.08000 * 119.98523 * 179.97438 * 22 21 19 41 41 H 1.08001 * 119.97223 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.98761 * 180.27973 * 24 23 22 43 43 H 1.08997 * 113.60855 * 25.43395 * 25 13 12 44 44 H 1.09004 * 113.61243 * 156.33642 * 25 13 12 45 45 H 1.07999 * 120.08945 * 180.02562 * 26 7 6 46 46 H 1.07999 * 119.91739 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6824 -2.0618 1.3949 6 6 2.1392 -2.7190 2.5178 7 6 2.8551 -2.0163 3.4919 8 6 3.3458 -2.7102 4.6939 9 6 4.0353 -2.0293 5.6311 10 6 4.5229 -2.7194 6.8270 11 8 4.3053 -3.9076 6.9750 12 7 5.2126 -2.0388 7.7637 13 6 5.6999 -2.7291 8.9603 14 1 5.8459 -3.7978 8.8026 15 6 6.8999 -2.0351 9.6262 16 6 5.8785 -1.2267 10.4435 17 1 5.5659 -0.3016 9.9592 18 6 6.2789 -1.0275 11.8826 19 6 6.4480 0.2519 12.3836 20 9 6.2537 1.3226 11.5829 21 6 6.8155 0.4334 13.7064 22 6 7.0133 -0.6625 14.5245 23 6 6.8452 -1.9398 14.0227 24 6 6.4733 -2.1221 12.7040 25 6 4.9002 -2.3976 10.2314 26 6 3.1027 -0.6510 3.3184 27 6 2.6392 -0.0079 2.1901 28 1 -0.3933 0.4416 -0.7651 29 1 1.7923 -0.5138 -0.8900 30 1 1.5614 2.4679 1.2085 31 1 3.5346 1.7703 -0.0322 32 1 1.1289 -2.6031 0.6419 33 1 1.9402 -3.7727 2.6469 34 1 3.1527 -3.7647 4.8253 35 1 4.2280 -0.9748 5.4999 36 1 5.3856 -1.0917 7.6458 37 1 7.5112 -2.7048 10.2310 38 1 7.4897 -1.4283 8.9391 39 1 6.9481 1.4310 14.0982 40 1 7.3003 -0.5212 15.5561 41 1 6.9997 -2.7957 14.6630 42 1 6.3378 -3.1203 12.3144 43 1 3.8759 -2.0822 10.0329 44 1 4.9658 -3.1664 11.0014 45 1 3.6553 -0.1016 4.0662 46 1 2.8299 1.0464 2.0544 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705094_12360594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:17:16 Heat of formation + Delta-G solvation = -9.535073 kcal Electronic energy + Delta-G solvation = -28711.694055 eV Core-core repulsion = 24448.503474 eV Total energy + Delta-G solvation = -4263.190580 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.142 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.95067 -41.60560 -40.75768 -40.21281 -38.81975 -37.72941 -35.24517 -34.67593 -32.40915 -31.97913 -31.46980 -31.23306 -27.47895 -26.79529 -26.23340 -24.40366 -24.12047 -23.59631 -22.66680 -22.12433 -20.64724 -20.13662 -18.96824 -18.61926 -18.39061 -17.54754 -17.44551 -17.24596 -16.81684 -16.69373 -16.67491 -16.25188 -16.04000 -15.62642 -15.30918 -15.19048 -15.14078 -15.06629 -14.67597 -14.38212 -14.18314 -14.09948 -13.93935 -13.87417 -13.63783 -13.51488 -13.07783 -13.06776 -13.04069 -12.42552 -12.38442 -12.07231 -11.98144 -11.95981 -11.81028 -11.44264 -11.29677 -11.17130 -10.32393 -10.20690 -10.14401 -9.90594 -9.60665 -9.36617 -4.95690 -0.67958 0.15369 0.21831 0.21977 0.76227 1.28096 1.62642 1.94285 2.04548 2.11483 2.57845 2.65641 3.23640 3.34728 3.37861 3.44289 3.55161 3.59252 3.64272 3.72160 3.79441 3.87918 3.88855 4.05089 4.06571 4.08787 4.13900 4.19203 4.28814 4.33526 4.36038 4.47170 4.57216 4.68748 4.68943 4.76315 4.83299 4.83478 4.91832 4.94920 4.95637 5.01841 5.05626 5.09219 5.21893 5.24700 5.33100 5.37574 5.45835 5.46231 5.54545 5.74599 5.92726 6.42915 6.87876 7.10869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.082 4.082 3 Si 0.772 3.228 4 C -0.081 4.081 5 C -0.102 4.102 6 C -0.096 4.096 7 C -0.082 4.082 8 C -0.016 4.016 9 C -0.212 4.212 10 C 0.547 3.453 11 O -0.585 6.585 12 N -0.698 5.698 13 C 0.116 3.884 14 H 0.092 0.908 15 C -0.121 4.121 16 C -0.073 4.073 17 H 0.096 0.904 18 C -0.112 4.112 19 C 0.071 3.929 20 F -0.152 7.152 21 C -0.163 4.163 22 C -0.099 4.099 23 C -0.127 4.127 24 C -0.095 4.095 25 C -0.138 4.138 26 C -0.098 4.098 27 C -0.145 4.145 28 H 0.404 0.596 29 H 0.096 0.904 30 H -0.296 1.296 31 H -0.288 1.288 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.132 0.868 35 H 0.156 0.844 36 H 0.415 0.585 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.141 0.859 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.064 0.936 44 H 0.107 0.893 45 H 0.151 0.849 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.308 2.214 -2.025 3.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.192 4.192 3 Si 0.679 3.321 4 C -0.081 4.081 5 C -0.120 4.120 6 C -0.114 4.114 7 C -0.082 4.082 8 C -0.036 4.036 9 C -0.232 4.232 10 C 0.338 3.662 11 O -0.467 6.467 12 N -0.348 5.348 13 C 0.010 3.990 14 H 0.111 0.889 15 C -0.159 4.159 16 C -0.091 4.091 17 H 0.114 0.886 18 C -0.112 4.112 19 C 0.052 3.948 20 F -0.130 7.130 21 C -0.182 4.182 22 C -0.117 4.117 23 C -0.145 4.145 24 C -0.112 4.112 25 C -0.176 4.176 26 C -0.115 4.115 27 C -0.162 4.162 28 H 0.255 0.745 29 H 0.114 0.886 30 H -0.224 1.224 31 H -0.215 1.215 32 H 0.161 0.839 33 H 0.166 0.834 34 H 0.149 0.851 35 H 0.173 0.827 36 H 0.252 0.748 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.159 0.841 40 H 0.171 0.829 41 H 0.170 0.830 42 H 0.168 0.832 43 H 0.083 0.917 44 H 0.125 0.875 45 H 0.168 0.832 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.730 1.720 -0.986 2.631 hybrid contribution 0.040 0.382 0.174 0.422 sum 1.770 2.102 -0.812 2.865 Atomic orbital electron populations 1.86444 1.17077 1.82434 1.51442 1.24870 0.86003 1.11088 0.97245 0.94325 0.77405 0.75589 0.84822 1.19932 0.97611 0.94865 0.95687 1.21193 0.98752 0.93693 0.98347 1.21738 0.95679 1.01092 0.92867 1.19126 1.00300 0.93708 0.95086 1.22372 0.91025 0.99803 0.90376 1.22989 1.03848 1.01907 0.94482 1.18632 0.77519 0.86308 0.83754 1.90811 1.59083 1.17186 1.79664 1.45503 1.55486 1.13686 1.20163 1.21855 0.95422 0.97661 0.84047 0.88947 1.23370 0.95544 0.98753 0.98229 1.21541 0.97784 0.98824 0.90959 0.88571 1.19889 1.02651 0.91602 0.97107 1.17913 1.04017 0.83269 0.89561 1.91447 1.93032 1.54963 1.73606 1.21419 1.02802 1.01800 0.92190 1.21374 0.97821 0.91695 1.00792 1.21594 0.98914 0.98229 0.95801 1.21204 0.97709 0.98782 0.93546 1.23606 0.98291 0.97913 0.97802 1.21558 0.98717 0.93860 0.97414 1.21009 1.00731 0.99280 0.95195 0.74461 0.88576 1.22407 1.21504 0.83875 0.83352 0.85066 0.82669 0.74778 0.87211 0.89767 0.84068 0.82941 0.83006 0.83181 0.91702 0.87513 0.83162 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.32 12.81 -148.98 -1.91 -1.59 16 2 C -0.08 0.08 2.79 71.23 0.20 0.28 16 3 Si 0.77 -1.88 29.83 68.60 2.05 0.17 16 4 C -0.08 -0.34 5.39 -19.79 -0.11 -0.45 16 5 C -0.10 -0.33 9.66 22.23 0.21 -0.11 16 6 C -0.10 -0.26 9.80 22.57 0.22 -0.04 16 7 C -0.08 -0.28 5.87 -20.15 -0.12 -0.40 16 8 C -0.02 -0.05 9.46 23.84 0.23 0.17 16 9 C -0.21 -0.32 9.41 23.62 0.22 -0.10 16 10 C 0.55 3.19 7.74 86.38 0.67 3.86 16 11 O -0.59 -8.35 15.85 -4.35 -0.07 -8.42 16 12 N -0.70 -0.17 5.26 -444.24 -2.34 -2.51 16 13 C 0.12 0.02 4.30 45.52 0.20 0.22 16 14 H 0.09 0.34 7.50 -2.39 -0.02 0.32 16 15 C -0.12 0.38 7.29 31.12 0.23 0.60 16 16 C -0.07 0.07 3.79 -10.92 -0.04 0.03 16 17 H 0.10 0.00 7.45 -2.39 -0.02 -0.02 16 18 C -0.11 -0.13 5.29 -19.82 -0.10 -0.24 16 19 C 0.07 0.30 7.25 22.38 0.16 0.46 16 20 F -0.15 -1.05 16.36 44.97 0.74 -0.31 16 21 C -0.16 -0.25 10.03 22.32 0.22 -0.02 16 22 C -0.10 0.18 10.04 22.26 0.22 0.40 16 23 C -0.13 0.36 10.04 22.27 0.22 0.58 16 24 C -0.09 0.18 8.62 22.26 0.19 0.37 16 25 C -0.14 0.08 7.27 31.21 0.23 0.30 16 26 C -0.10 -0.27 9.41 22.57 0.21 -0.05 16 27 C -0.14 -0.67 8.65 22.23 0.19 -0.47 16 28 H 0.40 -4.50 8.74 -74.06 -0.65 -5.14 16 29 H 0.10 -0.50 7.96 -2.39 -0.02 -0.52 16 30 H -0.30 -1.49 7.04 99.48 0.70 -0.78 16 31 H -0.29 -0.84 7.11 99.48 0.71 -0.13 16 32 H 0.14 0.03 8.06 -2.91 -0.02 0.00 16 33 H 0.15 -0.17 8.06 -2.91 -0.02 -0.20 16 34 H 0.13 0.62 7.52 -2.91 -0.02 0.59 16 35 H 0.16 -0.70 6.07 -2.91 -0.02 -0.72 16 36 H 0.42 -2.09 8.68 -92.71 -0.81 -2.89 16 37 H 0.11 -0.52 7.73 -2.39 -0.02 -0.54 16 38 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 39 H 0.14 -0.12 8.06 -2.91 -0.02 -0.14 16 40 H 0.15 -0.98 8.06 -2.91 -0.02 -1.00 16 41 H 0.15 -1.13 8.06 -2.91 -0.02 -1.15 16 42 H 0.15 -0.88 6.65 -2.91 -0.02 -0.90 16 43 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.11 -0.28 6.31 -2.38 -0.02 -0.30 16 45 H 0.15 -0.37 6.17 -2.91 -0.02 -0.39 16 46 H 0.12 0.45 4.84 -2.91 -0.01 0.43 16 Total: 0.00 -22.51 388.56 1.55 -20.97 By element: Atomic # 1 Polarization: -13.32 SS G_CDS: -0.38 Total: -13.70 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 3.46 Total: 5.39 kcal Atomic # 7 Polarization: -0.17 SS G_CDS: -2.34 Total: -2.51 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -1.98 Total: -10.01 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.74 Total: -0.31 kcal Atomic # 14 Polarization: -1.88 SS G_CDS: 2.05 Total: 0.17 kcal Total: -22.51 1.55 -20.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705094_12360594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.431 kcal (2) G-P(sol) polarization free energy of solvation -22.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds