Wall clock time and date at job start Mon Mar 8 2021 05:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86300 * 109.46933 * 2 1 4 4 C 1.50695 * 109.47532 * 120.00679 * 2 1 3 5 5 C 1.38048 * 119.80600 * 64.97269 * 4 2 1 6 6 C 1.38720 * 120.08271 * 179.97438 * 5 4 2 7 7 O 1.35649 * 120.14794 * 180.02562 * 6 5 4 8 8 C 1.40130 * 119.69826 * 0.02562 * 6 5 4 9 9 C 1.47538 * 120.18995 * 179.97438 * 8 6 5 10 10 O 1.21590 * 120.00113 * 359.97438 * 9 8 6 11 11 N 1.34775 * 120.00007 * 180.02562 * 9 8 6 12 12 C 1.46502 * 120.00029 * 179.97438 * 11 9 8 13 13 H 1.09006 * 112.84697 * 23.80554 * 12 11 9 14 14 C 1.53780 * 113.61283 * 154.99740 * 12 11 9 15 15 C 1.53784 * 87.08062 * 89.12015 * 14 12 11 16 16 H 1.08995 * 113.61281 * 270.88446 * 15 14 12 17 17 C 1.50698 * 113.61568 * 140.06279 * 15 14 12 18 18 C 1.38441 * 120.01097 * 119.99702 * 17 15 14 19 19 F 1.35097 * 120.02740 * 359.97438 * 18 17 15 20 20 C 1.38482 * 119.94409 * 180.02562 * 18 17 15 21 21 C 1.38172 * 119.97660 * 0.02562 * 20 18 17 22 22 C 1.38261 * 120.02586 * 359.97438 * 21 20 18 23 23 C 1.38214 * 120.01199 * 299.72901 * 17 15 14 24 24 C 1.53776 * 113.61601 * 252.49695 * 12 11 9 25 25 C 1.39712 * 119.62085 * 0.02562 * 8 6 5 26 26 C 1.37783 * 119.90563 * 359.95725 * 25 8 6 27 27 H 0.96700 * 114.00398 * 59.99279 * 1 2 3 28 28 H 1.09005 * 109.46879 * 240.00843 * 2 1 3 29 29 H 1.48495 * 109.99882 * 60.00631 * 3 2 1 30 30 H 1.48502 * 109.99846 * 181.32052 * 3 2 1 31 31 H 1.07993 * 119.95872 * 0.02562 * 5 4 2 32 32 H 0.96703 * 114.00048 * 89.99985 * 7 6 5 33 33 H 0.97006 * 120.00127 * 359.97438 * 11 9 8 34 34 H 1.09004 * 113.61589 * 203.66681 * 14 12 11 35 35 H 1.09000 * 113.61477 * 334.56858 * 14 12 11 36 36 H 1.07999 * 120.00693 * 179.97438 * 20 18 17 37 37 H 1.08006 * 119.98476 * 179.97438 * 21 20 18 38 38 H 1.08009 * 119.97244 * 180.02562 * 22 21 20 39 39 H 1.07994 * 119.99091 * 359.97438 * 23 17 15 40 40 H 1.08998 * 113.61951 * 25.43451 * 24 12 11 41 41 H 1.09005 * 113.61088 * 156.33607 * 24 12 11 42 42 H 1.07999 * 120.04497 * 180.02562 * 25 8 6 43 43 H 1.07996 * 119.85071 * 180.29584 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 1.6824 -2.0584 1.3940 6 6 2.1426 -2.7183 2.5241 7 8 1.8992 -4.0429 2.6860 8 6 2.8602 -2.0103 3.4975 9 6 3.3543 -2.7012 4.7038 10 8 3.1388 -3.8882 4.8558 11 7 4.0436 -2.0164 5.6378 12 6 4.5337 -2.7023 6.8360 13 1 4.6566 -3.7754 6.6889 14 6 5.7562 -2.0245 7.4771 15 6 4.7622 -1.1866 8.2986 16 1 4.4600 -0.2620 7.8071 17 6 5.1872 -0.9771 9.7292 18 6 5.3877 0.3051 10.2112 19 9 5.2030 1.3691 9.3995 20 6 5.7787 0.4960 11.5259 21 6 5.9688 -0.5930 12.3547 22 6 5.7683 -1.8730 11.8721 23 6 5.3715 -2.0646 10.5620 24 6 3.7600 -2.3384 8.1141 25 6 3.1041 -0.6462 3.3196 26 6 2.6399 -0.0068 2.1908 27 1 -0.3934 0.4418 -0.7650 28 1 1.7922 -0.5137 -0.8901 29 1 1.5615 2.4678 1.2085 30 1 3.5345 1.7703 -0.0322 31 1 1.1293 -2.6001 0.6410 32 1 2.5832 -4.6168 2.3148 33 1 4.2152 -1.0694 5.5168 34 1 6.3626 -2.6992 8.0815 35 1 6.3475 -1.4364 6.7752 36 1 5.9358 1.4958 11.9029 37 1 6.2742 -0.4443 13.3800 38 1 5.9167 -2.7237 12.5209 39 1 5.2106 -3.0647 10.1875 40 1 2.7398 -2.0036 7.9266 41 1 3.8207 -3.0989 8.8927 42 1 3.6568 -0.0940 4.0652 43 1 2.8331 1.0466 2.0519 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705094_13422076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:59 Heat of formation + Delta-G solvation = -64.054056 kcal Electronic energy + Delta-G solvation = -28873.989325 eV Core-core repulsion = 24573.516191 eV Total energy + Delta-G solvation = -4300.473134 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.95997 -41.96997 -41.09330 -39.89754 -38.81358 -38.32423 -37.24791 -34.85340 -33.01361 -31.68784 -31.42852 -31.28010 -27.76394 -26.81147 -26.22473 -24.10337 -23.99398 -23.46265 -22.68013 -21.84616 -20.32207 -19.42973 -18.96095 -18.64205 -18.40920 -17.73139 -17.45791 -17.06913 -16.73497 -16.68334 -16.62683 -16.37522 -16.03368 -15.67311 -15.34300 -15.20489 -15.09802 -15.01494 -14.49048 -14.26828 -14.18377 -14.03035 -13.96810 -13.55933 -13.44548 -13.13615 -13.06473 -13.06035 -12.43734 -12.40997 -12.16153 -11.99540 -11.85882 -11.82530 -11.31167 -11.03344 -10.48382 -10.27835 -10.12756 -9.94047 -9.89438 -9.61365 -4.92486 -0.56790 -0.02867 0.14646 0.21395 1.26865 1.53821 1.67795 1.88965 1.95494 2.41125 2.57246 2.97298 3.22325 3.26100 3.35960 3.42816 3.53079 3.56099 3.61935 3.71127 3.78525 3.87685 3.98296 4.04816 4.10019 4.13352 4.24712 4.32497 4.35296 4.50164 4.55217 4.61012 4.67420 4.73847 4.80051 4.82242 4.90335 4.94176 4.97665 5.03513 5.08063 5.08556 5.21318 5.34675 5.42390 5.45496 5.50821 5.92060 6.31866 6.63296 6.86787 7.02118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.089 4.089 3 Si 0.778 3.222 4 C -0.040 4.040 5 C -0.134 4.134 6 C 0.161 3.839 7 O -0.492 6.492 8 C -0.181 4.181 9 C 0.562 3.438 10 O -0.555 6.555 11 N -0.700 5.700 12 C 0.117 3.883 13 H 0.097 0.903 14 C -0.120 4.120 15 C -0.074 4.074 16 H 0.095 0.905 17 C -0.112 4.112 18 C 0.071 3.929 19 F -0.152 7.152 20 C -0.163 4.163 21 C -0.099 4.099 22 C -0.127 4.127 23 C -0.094 4.094 24 C -0.139 4.139 25 C -0.055 4.055 26 C -0.154 4.154 27 H 0.406 0.594 28 H 0.101 0.899 29 H -0.292 1.292 30 H -0.281 1.281 31 H 0.148 0.852 32 H 0.410 0.590 33 H 0.411 0.589 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.142 0.858 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.161 0.839 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.345 3.153 -2.578 5.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.198 4.198 3 Si 0.682 3.318 4 C -0.041 4.041 5 C -0.153 4.153 6 C 0.115 3.885 7 O -0.306 6.306 8 C -0.185 4.185 9 C 0.350 3.650 10 O -0.434 6.434 11 N -0.352 5.352 12 C 0.012 3.988 13 H 0.115 0.885 14 C -0.158 4.158 15 C -0.092 4.092 16 H 0.113 0.887 17 C -0.112 4.112 18 C 0.052 3.948 19 F -0.130 7.130 20 C -0.182 4.182 21 C -0.117 4.117 22 C -0.145 4.145 23 C -0.112 4.112 24 C -0.177 4.177 25 C -0.074 4.074 26 C -0.171 4.171 27 H 0.258 0.742 28 H 0.119 0.881 29 H -0.220 1.220 30 H -0.208 1.208 31 H 0.166 0.834 32 H 0.271 0.729 33 H 0.248 0.752 34 H 0.130 0.870 35 H 0.103 0.897 36 H 0.159 0.841 37 H 0.171 0.829 38 H 0.170 0.830 39 H 0.168 0.832 40 H 0.081 0.919 41 H 0.127 0.873 42 H 0.178 0.822 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.261 2.794 -1.264 4.476 hybrid contribution 0.302 0.057 -0.082 0.318 sum 3.562 2.851 -1.346 4.757 Atomic orbital electron populations 1.86452 1.16935 1.82543 1.51559 1.25002 0.86216 1.11759 0.96856 0.94067 0.77673 0.74929 0.85098 1.19847 0.95312 0.93452 0.95467 1.21423 1.01349 0.94865 0.97631 1.18721 0.92771 0.85218 0.91800 1.84719 1.50308 1.13076 1.82479 1.20431 1.05050 0.95628 0.97363 1.18175 0.77674 0.86304 0.82874 1.90803 1.57626 1.16290 1.78664 1.45526 1.55772 1.13546 1.20350 1.21880 0.95390 0.97878 0.83644 0.88517 1.23388 0.95457 0.98615 0.98325 1.21499 0.97715 0.98753 0.91224 0.88678 1.19872 1.02619 0.91624 0.97122 1.17914 1.03979 0.83416 0.89466 1.91445 1.93199 1.55486 1.72918 1.21416 1.02706 1.01842 0.92233 1.21375 0.97852 0.91737 1.00700 1.21597 0.98795 0.98172 0.95950 1.21200 0.97702 0.98852 0.93465 1.23573 0.98179 0.98083 0.97909 1.21363 0.96645 0.92063 0.97320 1.21052 1.01311 0.99940 0.94840 0.74218 0.88082 1.21990 1.20755 0.83405 0.72908 0.75175 0.86972 0.89704 0.84053 0.82926 0.82987 0.83155 0.91914 0.87328 0.82196 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.68 12.81 -148.98 -1.91 -1.23 16 2 C -0.09 0.22 2.78 71.23 0.20 0.42 16 3 Si 0.78 -3.59 29.83 68.60 2.05 -1.54 16 4 C -0.04 -0.13 5.39 -19.84 -0.11 -0.24 16 5 C -0.13 -0.67 9.60 22.34 0.21 -0.45 16 6 C 0.16 1.24 6.72 22.84 0.15 1.39 16 7 O -0.49 -4.38 11.58 -68.72 -0.80 -5.18 16 8 C -0.18 -1.12 5.89 -20.01 -0.12 -1.24 16 9 C 0.56 4.51 7.76 86.70 0.67 5.19 16 10 O -0.55 -8.45 14.76 16.92 0.25 -8.20 16 11 N -0.70 -1.01 5.21 -443.20 -2.31 -3.32 16 12 C 0.12 0.05 4.32 45.52 0.20 0.25 16 13 H 0.10 0.33 7.46 -2.38 -0.02 0.32 16 14 C -0.12 0.39 7.29 31.12 0.23 0.61 16 15 C -0.07 0.06 3.77 -11.01 -0.04 0.01 16 16 H 0.09 0.01 7.45 -2.39 -0.02 0.00 16 17 C -0.11 -0.14 5.29 -19.82 -0.10 -0.24 16 18 C 0.07 0.30 7.25 22.38 0.16 0.46 16 19 F -0.15 -1.04 16.36 44.97 0.74 -0.31 16 20 C -0.16 -0.25 10.03 22.31 0.22 -0.02 16 21 C -0.10 0.18 10.04 22.26 0.22 0.40 16 22 C -0.13 0.36 10.04 22.27 0.22 0.58 16 23 C -0.09 0.18 8.63 22.26 0.19 0.37 16 24 C -0.14 0.01 7.25 31.12 0.23 0.24 16 25 C -0.06 -0.08 9.54 22.52 0.21 0.13 16 26 C -0.15 -0.40 8.64 22.24 0.19 -0.20 16 27 H 0.41 -4.84 8.74 -74.06 -0.65 -5.49 16 28 H 0.10 -0.69 7.96 -2.38 -0.02 -0.71 16 29 H -0.29 -0.76 7.05 99.48 0.70 -0.06 16 30 H -0.28 0.01 7.11 99.48 0.71 0.72 16 31 H 0.15 0.43 8.06 -2.91 -0.02 0.41 16 32 H 0.41 0.39 9.06 -74.06 -0.67 -0.28 16 33 H 0.41 -1.46 6.73 -92.70 -0.62 -2.08 16 34 H 0.11 -0.57 7.73 -2.38 -0.02 -0.59 16 35 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 36 H 0.14 -0.12 8.06 -2.91 -0.02 -0.15 16 37 H 0.15 -0.98 8.06 -2.91 -0.02 -1.00 16 38 H 0.15 -1.13 8.06 -2.91 -0.02 -1.16 16 39 H 0.15 -0.88 6.65 -2.91 -0.02 -0.90 16 40 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.11 -0.26 6.31 -2.38 -0.02 -0.28 16 42 H 0.16 -0.83 6.40 -2.91 -0.02 -0.84 16 43 H 0.14 0.07 4.83 -2.91 -0.01 0.05 16 Total: 0.00 -24.54 362.80 0.16 -24.38 By element: Atomic # 1 Polarization: -11.45 SS G_CDS: -0.81 Total: -12.26 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 2.95 Total: 7.65 kcal Atomic # 7 Polarization: -1.01 SS G_CDS: -2.31 Total: -3.32 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -2.45 Total: -14.61 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.74 Total: -0.31 kcal Atomic # 14 Polarization: -3.59 SS G_CDS: 2.05 Total: -1.54 kcal Total: -24.54 0.16 -24.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705094_13422076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.673 kcal (2) G-P(sol) polarization free energy of solvation -24.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds