Wall clock time and date at job start Mon Mar 8 2021 05:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39043 * 110.99815 * 236.04799 * 2 1 3 5 5 C 1.39203 * 119.93121 * 240.00456 * 4 2 1 6 6 C 1.50697 * 119.96538 * 359.97438 * 5 4 2 7 7 O 1.42902 * 109.47290 * 285.00642 * 6 5 4 8 8 Si 1.86295 * 109.47105 * 165.00163 * 6 5 4 9 9 C 1.37629 * 120.06996 * 180.02562 * 5 4 2 10 10 C 1.39773 * 119.92914 * 359.97387 * 9 5 4 11 11 C 1.47522 * 120.06904 * 180.02562 * 10 9 5 12 12 O 1.21600 * 120.00119 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00210 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00114 * 179.97438 * 13 11 10 15 15 H 1.09003 * 112.84983 * 336.20390 * 14 13 11 16 16 C 1.53781 * 113.61084 * 107.50543 * 14 13 11 17 17 C 1.53787 * 87.08090 * 89.11689 * 16 14 13 18 18 H 1.08991 * 113.68972 * 270.87480 * 17 16 14 19 19 C 1.50700 * 113.61174 * 139.97932 * 17 16 14 20 20 C 1.38434 * 120.00935 * 142.50680 * 19 17 16 21 21 F 1.35097 * 120.02733 * 359.97438 * 20 19 17 22 22 C 1.38480 * 119.94716 * 179.97438 * 20 19 17 23 23 C 1.38171 * 119.97492 * 0.02562 * 22 20 19 24 24 C 1.38266 * 120.02634 * 359.97438 * 23 22 20 25 25 C 1.38220 * 120.05094 * 359.72305 * 24 23 22 26 26 C 1.53776 * 113.61533 * 205.00418 * 14 13 11 27 27 C 1.39819 * 119.86693 * 359.97438 * 10 9 5 28 28 C 1.37590 * 119.92402 * 359.75090 * 27 10 9 29 29 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 30 30 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 31 31 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 32 32 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 33 33 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 35 35 H 1.08998 * 109.47004 * 45.00152 * 6 5 4 36 36 H 0.96699 * 114.00359 * 59.99790 * 7 6 5 37 37 H 1.48502 * 110.00271 * 178.68048 * 8 6 5 38 38 H 1.48498 * 110.00400 * 300.00155 * 8 6 5 39 39 H 1.08000 * 120.03577 * 179.97438 * 9 5 4 40 40 H 0.96996 * 119.99978 * 0.02562 * 13 11 10 41 41 H 1.09005 * 113.61695 * 203.66757 * 16 14 13 42 42 H 1.09003 * 113.61863 * 334.56933 * 16 14 13 43 43 H 1.08006 * 120.01185 * 179.97438 * 22 20 19 44 44 H 1.08007 * 119.98778 * 179.97438 * 23 22 20 45 45 H 1.08002 * 119.97510 * 180.02562 * 24 23 22 46 46 H 1.08001 * 119.99073 * 180.27224 * 25 24 23 47 47 H 1.08998 * 113.61751 * 25.43453 * 26 14 13 48 48 H 1.09006 * 113.61206 * 156.33935 * 26 14 13 49 49 H 1.07995 * 120.03704 * 179.97438 * 27 10 9 50 50 H 1.08002 * 119.96190 * 180.24921 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9673 -0.7250 -1.0768 5 6 2.7792 -1.8331 -0.8519 6 6 3.1173 -2.2448 0.5578 7 8 4.0867 -1.3442 1.0976 8 14 3.8119 -3.9734 0.5502 9 6 3.2744 -2.5525 -1.9156 10 6 2.9607 -2.1696 -3.2228 11 6 3.4893 -2.9388 -4.3652 12 8 4.1983 -3.9073 -4.1703 13 7 3.1856 -2.5688 -5.6252 14 6 3.7110 -3.3323 -6.7597 15 1 4.6198 -3.8823 -6.5152 16 6 2.6480 -4.1824 -7.4752 17 6 2.3746 -2.9544 -8.3597 18 1 1.6185 -2.2823 -7.9543 19 6 2.1388 -3.2947 -9.8088 20 6 1.1962 -2.5927 -10.5403 21 9 0.4869 -1.6027 -9.9556 22 6 0.9809 -2.9061 -11.8719 23 6 1.7066 -3.9192 -12.4686 24 6 2.6478 -4.6196 -11.7370 25 6 2.8679 -4.3036 -10.4096 26 6 3.8165 -2.5137 -8.0572 27 6 2.1440 -1.0568 -3.4454 28 6 1.6475 -0.3451 -2.3776 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3633 0.4513 -0.9233 31 1 -0.3633 0.5740 0.8525 32 1 1.6461 1.8947 0.8901 33 1 3.0851 1.3422 0.0005 34 1 1.6460 1.8948 -0.8900 35 1 2.2160 -2.2181 1.1701 36 1 3.7923 -0.4238 1.1320 37 1 4.1790 -4.3794 1.9306 38 1 2.8133 -4.9197 -0.0089 39 1 3.9046 -3.4119 -1.7405 40 1 2.6198 -1.7965 -5.7807 41 1 3.0617 -5.0303 -8.0211 42 1 1.8073 -4.4574 -6.8381 43 1 0.2455 -2.3594 -12.4435 44 1 1.5386 -4.1641 -13.5071 45 1 3.2148 -5.4111 -12.2044 46 1 3.6065 -4.8484 -9.8402 47 1 3.9194 -1.4415 -7.8899 48 1 4.5499 -2.9054 -8.7622 49 1 1.9003 -0.7583 -4.4543 50 1 1.0134 0.5121 -2.5488 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705094_13422196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:08 Heat of formation + Delta-G solvation = -9.995501 kcal Electronic energy + Delta-G solvation = -33048.593244 eV Core-core repulsion = 28537.107689 eV Total energy + Delta-G solvation = -4511.485555 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.91880 -41.91079 -41.21650 -40.15102 -38.79593 -37.70136 -37.30927 -34.81917 -32.85396 -31.92633 -31.43632 -31.08087 -28.60814 -26.94391 -26.84739 -26.74050 -25.69251 -23.89585 -23.36156 -22.99096 -22.59448 -21.29566 -20.24804 -19.21534 -18.68923 -18.02018 -17.87421 -17.44376 -17.36171 -16.95032 -16.64548 -16.54600 -16.41793 -16.07808 -15.95476 -15.59010 -15.33708 -15.21945 -15.17502 -15.03737 -14.75348 -14.48953 -14.21850 -14.14276 -13.96987 -13.93509 -13.55297 -13.46166 -13.13725 -13.05986 -13.01586 -12.96199 -12.74445 -12.64363 -12.36824 -12.20994 -11.92080 -11.76657 -11.42271 -11.30585 -11.24551 -11.05447 -10.23928 -10.11780 -9.88680 -9.80983 -9.64445 -9.57362 -4.92968 -0.43379 0.12593 0.18420 0.24960 1.32249 1.53248 1.63869 1.85713 1.97310 2.59078 2.61400 2.70804 3.26900 3.40940 3.48465 3.55985 3.59474 3.67297 3.69462 3.83404 3.88768 3.93147 3.99979 4.09402 4.09944 4.16385 4.18164 4.32916 4.36651 4.38447 4.38956 4.42770 4.56162 4.60626 4.63434 4.71327 4.74195 4.82706 4.86822 4.91805 4.96111 4.96306 4.99013 5.00528 5.07570 5.10681 5.13278 5.18774 5.25172 5.38918 5.48846 5.49975 5.57638 5.74107 5.95660 6.17448 6.40176 6.62476 7.08257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.527 5.527 3 C 0.023 3.977 4 C 0.126 3.874 5 C -0.112 4.112 6 C -0.058 4.058 7 O -0.544 6.544 8 Si 0.774 3.226 9 C -0.058 4.058 10 C -0.146 4.146 11 C 0.561 3.439 12 O -0.569 6.569 13 N -0.697 5.697 14 C 0.117 3.883 15 H 0.097 0.903 16 C -0.138 4.138 17 C -0.073 4.073 18 H 0.097 0.903 19 C -0.111 4.111 20 C 0.072 3.928 21 F -0.151 7.151 22 C -0.164 4.164 23 C -0.100 4.100 24 C -0.128 4.128 25 C -0.094 4.094 26 C -0.122 4.122 27 C -0.060 4.060 28 C -0.152 4.152 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.373 0.627 37 H -0.286 1.286 38 H -0.274 1.274 39 H 0.139 0.861 40 H 0.413 0.587 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.141 0.859 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.151 0.849 47 H 0.085 0.915 48 H 0.110 0.890 49 H 0.157 0.843 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.802 4.072 -5.023 6.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.249 5.249 3 C -0.123 4.123 4 C 0.032 3.968 5 C -0.114 4.114 6 C -0.168 4.168 7 O -0.351 6.351 8 Si 0.677 3.323 9 C -0.077 4.077 10 C -0.149 4.149 11 C 0.350 3.650 12 O -0.449 6.449 13 N -0.348 5.348 14 C 0.011 3.989 15 H 0.115 0.885 16 C -0.177 4.177 17 C -0.092 4.092 18 H 0.116 0.884 19 C -0.112 4.112 20 C 0.053 3.947 21 F -0.130 7.130 22 C -0.183 4.183 23 C -0.118 4.118 24 C -0.146 4.146 25 C -0.112 4.112 26 C -0.159 4.159 27 C -0.079 4.079 28 C -0.172 4.172 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.223 0.777 37 H -0.213 1.213 38 H -0.200 1.200 39 H 0.156 0.844 40 H 0.251 0.749 41 H 0.125 0.875 42 H 0.084 0.916 43 H 0.159 0.841 44 H 0.169 0.831 45 H 0.169 0.831 46 H 0.169 0.831 47 H 0.103 0.897 48 H 0.128 0.872 49 H 0.175 0.825 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.934 1.882 -4.087 4.596 hybrid contribution -2.182 1.973 -0.224 2.950 sum -3.116 3.855 -4.311 6.570 Atomic orbital electron populations 1.22526 0.84458 1.02774 1.02373 1.59460 1.09770 1.15414 1.40248 1.22590 1.01057 0.86040 1.02592 1.18967 0.94500 0.93455 0.89919 1.20197 0.99007 0.96222 0.95936 1.25161 0.96155 1.04842 0.90629 1.86696 1.41684 1.21777 1.84914 0.92255 0.87489 0.71169 0.81362 1.21080 0.96844 0.98478 0.91251 1.19865 1.03235 0.98907 0.92897 1.18337 0.79595 0.83504 0.83559 1.90795 1.39166 1.29107 1.85805 1.45492 1.52272 1.32710 1.04344 1.21887 0.97733 0.94091 0.85171 0.88454 1.23570 0.99237 0.97158 0.97694 1.21518 0.98598 0.98948 0.90109 0.88436 1.19894 0.97019 0.97791 0.96455 1.17896 0.94757 0.89482 0.92562 1.91445 1.77227 1.59698 1.84601 1.21410 1.02818 1.00707 0.93356 1.21363 0.94927 0.94163 1.01334 1.21589 0.98313 1.00418 0.94285 1.21206 0.98849 0.95848 0.95303 1.23393 0.95719 1.01337 0.95499 1.21435 0.93608 0.92220 1.00653 1.21814 1.01700 1.01532 0.92184 0.91890 0.93709 0.89407 0.89304 0.90807 0.93880 0.90252 0.77729 1.21298 1.20018 0.84390 0.74941 0.87479 0.91583 0.84144 0.83089 0.83108 0.83104 0.89668 0.87172 0.82519 0.83216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.33 127.69 1.19 1.09 16 2 N -0.53 1.18 3.70 -745.08 -2.76 -1.58 16 3 C 0.02 -0.13 9.00 127.69 1.15 1.02 16 4 C 0.13 0.01 4.65 38.47 0.18 0.19 16 5 C -0.11 -0.39 5.28 -19.78 -0.10 -0.49 16 6 C -0.06 -0.26 2.29 71.24 0.16 -0.10 16 7 O -0.54 -2.82 12.65 -148.98 -1.89 -4.71 16 8 Si 0.77 4.37 30.17 68.60 2.07 6.44 16 9 C -0.06 -0.28 8.19 22.50 0.18 -0.10 16 10 C -0.15 -0.36 5.88 -20.08 -0.12 -0.48 16 11 C 0.56 2.74 7.76 86.69 0.67 3.42 16 12 O -0.57 -7.17 15.94 -4.03 -0.06 -7.23 16 13 N -0.70 1.06 5.21 -443.20 -2.31 -1.25 16 14 C 0.12 -0.21 4.32 45.52 0.20 -0.01 16 15 H 0.10 0.14 7.46 -2.39 -0.02 0.12 16 16 C -0.14 0.34 7.25 31.12 0.23 0.56 16 17 C -0.07 0.21 3.78 -11.01 -0.04 0.17 16 18 H 0.10 -0.23 7.45 -2.39 -0.02 -0.25 16 19 C -0.11 0.03 5.29 -19.82 -0.10 -0.07 16 20 C 0.07 0.20 7.25 22.37 0.16 0.36 16 21 F -0.15 -0.79 16.36 44.97 0.74 -0.05 16 22 C -0.16 -0.09 10.03 22.31 0.22 0.14 16 23 C -0.10 0.26 10.04 22.26 0.22 0.48 16 24 C -0.13 0.47 10.04 22.27 0.22 0.70 16 25 C -0.09 0.29 8.60 22.26 0.19 0.48 16 26 C -0.12 0.61 7.29 31.12 0.23 0.83 16 27 C -0.06 0.19 9.53 22.50 0.21 0.41 16 28 C -0.15 0.48 8.58 22.36 0.19 0.67 16 29 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.04 -0.27 7.08 -2.39 -0.02 -0.28 16 31 H 0.09 -0.53 8.14 -2.38 -0.02 -0.55 16 32 H 0.09 -0.65 8.14 -2.38 -0.02 -0.67 16 33 H 0.07 -0.39 7.51 -2.39 -0.02 -0.41 16 34 H 0.04 -0.29 7.47 -2.39 -0.02 -0.31 16 35 H 0.08 0.35 7.77 -2.39 -0.02 0.34 16 36 H 0.37 0.26 7.56 -74.06 -0.56 -0.30 16 37 H -0.29 -3.14 7.11 99.48 0.71 -2.44 16 38 H -0.27 -2.53 7.11 99.48 0.71 -1.82 16 39 H 0.14 0.78 4.70 -2.91 -0.01 0.76 16 40 H 0.41 -2.84 6.72 -92.71 -0.62 -3.47 16 41 H 0.11 -0.47 6.33 -2.38 -0.02 -0.48 16 42 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.14 -0.24 8.06 -2.91 -0.02 -0.27 16 44 H 0.15 -1.05 8.06 -2.91 -0.02 -1.07 16 45 H 0.15 -1.22 8.06 -2.91 -0.02 -1.25 16 46 H 0.15 -1.08 6.68 -2.91 -0.02 -1.09 16 47 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 48 H 0.11 -0.71 7.71 -2.38 -0.02 -0.73 16 49 H 0.16 -1.52 6.39 -2.91 -0.02 -1.54 16 50 H 0.15 -1.08 7.01 -2.91 -0.02 -1.10 16 Total: 0.00 -17.52 405.36 0.89 -16.63 By element: Atomic # 1 Polarization: -17.35 SS G_CDS: -0.15 Total: -17.50 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 5.25 Total: 9.25 kcal Atomic # 7 Polarization: 2.24 SS G_CDS: -5.07 Total: -2.83 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -1.95 Total: -11.94 kcal Atomic # 9 Polarization: -0.79 SS G_CDS: 0.74 Total: -0.05 kcal Atomic # 14 Polarization: 4.37 SS G_CDS: 2.07 Total: 6.44 kcal Total: -17.52 0.89 -16.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705094_13422196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.631 kcal (2) G-P(sol) polarization free energy of solvation -17.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds