Wall clock time and date at job start Mon Mar 8 2021 05:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86294 * 109.47076 * 2 1 4 4 C 1.50697 * 109.46916 * 120.00535 * 2 1 3 5 5 C 1.34173 * 125.44448 * 65.31137 * 4 2 1 6 6 C 1.47020 * 105.95901 * 180.14348 * 5 4 2 7 7 C 1.47374 * 127.19756 * 179.83141 * 6 5 4 8 8 O 1.21619 * 119.99625 * 359.71214 * 7 6 5 9 9 N 1.34774 * 120.00556 * 179.70837 * 7 6 5 10 10 C 1.46496 * 120.00099 * 180.02562 * 9 7 6 11 11 H 1.08994 * 112.91109 * 23.75176 * 10 9 7 12 12 C 1.53787 * 113.61210 * 155.00440 * 10 9 7 13 13 C 1.53778 * 87.08035 * 89.11438 * 12 10 9 14 14 H 1.09004 * 113.61682 * 270.87724 * 13 12 10 15 15 C 1.50698 * 113.61154 * 139.98353 * 13 12 10 16 16 C 1.38436 * 120.01454 * 119.99840 * 15 13 12 17 17 F 1.35099 * 120.02805 * 359.97438 * 16 15 13 18 18 C 1.38491 * 119.94749 * 180.02562 * 16 15 13 19 19 C 1.38173 * 119.97570 * 359.97438 * 18 16 15 20 20 C 1.38270 * 120.02434 * 0.02562 * 19 18 16 21 21 C 1.38224 * 120.01158 * 299.72383 * 15 13 12 22 22 C 1.53778 * 87.08449 * 25.43264 * 13 12 10 23 23 C 1.36422 * 105.61059 * 359.56967 * 6 5 4 24 24 O 1.33648 * 108.39752 * 0.26578 * 23 6 5 25 25 H 0.96696 * 114.00195 * 59.99942 * 1 2 3 26 26 H 1.09008 * 109.46963 * 239.99990 * 2 1 3 27 27 H 1.48499 * 110.00203 * 60.00356 * 3 2 1 28 28 H 1.48503 * 110.00034 * 181.31782 * 3 2 1 29 29 H 1.08005 * 127.02184 * 359.97438 * 5 4 2 30 30 H 0.97002 * 119.99411 * 0.02562 * 9 7 6 31 31 H 1.08998 * 113.61103 * 203.66698 * 12 10 9 32 32 H 1.08999 * 113.61167 * 334.56160 * 12 10 9 33 33 H 1.08002 * 120.00851 * 179.97438 * 18 16 15 34 34 H 1.08003 * 119.98730 * 179.97438 * 19 18 16 35 35 H 1.07997 * 119.97205 * 180.02562 * 20 19 18 36 36 H 1.07990 * 119.98803 * 359.97438 * 21 15 13 37 37 H 1.08993 * 113.61229 * 220.02023 * 22 13 12 38 38 H 1.09000 * 113.61263 * 89.11673 * 22 13 12 39 39 H 1.07996 * 125.79756 * 180.26021 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7602 -2.0135 1.5008 6 6 2.4122 -2.2463 2.7978 7 6 2.4998 -3.5192 3.5353 8 8 1.9925 -4.5244 3.0756 9 7 3.1421 -3.5694 4.7191 10 6 3.2296 -4.8349 5.4518 11 1 3.1265 -5.7070 4.8063 12 6 4.4340 -4.9129 6.4049 13 6 3.5246 -4.2925 7.4786 14 1 3.5401 -3.2026 7.4875 15 6 3.7113 -4.8929 8.8481 16 6 4.1083 -4.0936 9.9064 17 9 4.3292 -2.7751 9.7120 18 6 4.2800 -4.6470 11.1643 19 6 4.0544 -5.9958 11.3618 20 6 3.6579 -6.7931 10.3041 21 6 3.4807 -6.2409 9.0494 22 6 2.3365 -4.8854 6.7028 23 6 2.9244 -1.0388 3.1731 24 8 2.6268 -0.1422 2.2277 25 1 -0.3933 0.4417 -0.7650 26 1 1.7923 -0.5139 -0.8901 27 1 1.5616 2.4678 1.2085 28 1 3.5346 1.7703 -0.0321 29 1 1.2458 -2.7421 0.8915 30 1 3.5465 -2.7676 5.0858 31 1 4.7455 -5.9323 6.6323 32 1 5.2647 -4.2708 6.1121 33 1 4.5902 -4.0244 11.9905 34 1 4.1886 -6.4275 12.3427 35 1 3.4813 -7.8471 10.4595 36 1 3.1663 -6.8636 8.2251 37 1 1.4740 -4.2211 6.6506 38 1 2.0746 -5.8973 7.0118 39 1 3.4765 -0.8412 4.0800 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705094_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:23 Heat of formation + Delta-G solvation = -34.985231 kcal Electronic energy + Delta-G solvation = -25288.094632 eV Core-core repulsion = 21272.645777 eV Total energy + Delta-G solvation = -4015.448855 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.94515 -43.88968 -41.56495 -40.18761 -38.76761 -37.90730 -34.95083 -33.99239 -32.27939 -31.56049 -31.38801 -27.00668 -26.80016 -26.36220 -25.02576 -23.71278 -22.68369 -22.40075 -21.16490 -20.29584 -19.02026 -18.72315 -18.68582 -17.70063 -17.41773 -17.29729 -17.04622 -16.80748 -16.66867 -16.12216 -15.98178 -15.81805 -15.29095 -15.23788 -15.07049 -14.62149 -14.31029 -14.22158 -14.17923 -13.96563 -13.80524 -13.52847 -13.08370 -13.06024 -12.73331 -12.40286 -12.18411 -11.97759 -11.82096 -11.36756 -11.30185 -11.10031 -10.50124 -10.27188 -9.92460 -9.88955 -9.60323 -5.04881 0.08398 0.15764 0.22259 0.68557 1.16896 1.50276 1.67746 1.88522 2.00852 2.10511 2.58061 3.23363 3.25065 3.36511 3.37963 3.54728 3.60040 3.68319 3.78377 3.81120 3.88635 4.06312 4.13582 4.18381 4.32867 4.33509 4.36254 4.39885 4.56986 4.68859 4.72047 4.77731 4.82223 4.91737 4.95468 5.01780 5.03200 5.08868 5.22120 5.34868 5.46352 5.51086 5.68652 5.92965 6.32876 6.81788 7.00956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.048 4.048 3 Si 0.818 3.182 4 C -0.029 4.029 5 C -0.142 4.142 6 C -0.262 4.262 7 C 0.593 3.407 8 O -0.577 6.577 9 N -0.695 5.695 10 C 0.116 3.884 11 H 0.094 0.906 12 C -0.120 4.120 13 C -0.072 4.072 14 H 0.099 0.901 15 C -0.111 4.111 16 C 0.072 3.928 17 F -0.151 7.151 18 C -0.164 4.164 19 C -0.099 4.099 20 C -0.128 4.128 21 C -0.095 4.095 22 C -0.139 4.139 23 C 0.054 3.946 24 O -0.185 6.185 25 H 0.413 0.587 26 H 0.121 0.879 27 H -0.303 1.303 28 H -0.289 1.289 29 H 0.156 0.844 30 H 0.414 0.586 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.141 0.859 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.085 1.564 -0.494 2.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.156 4.156 3 Si 0.722 3.278 4 C -0.076 4.076 5 C -0.162 4.162 6 C -0.267 4.267 7 C 0.381 3.619 8 O -0.458 6.458 9 N -0.346 5.346 10 C 0.011 3.989 11 H 0.112 0.888 12 C -0.158 4.158 13 C -0.091 4.091 14 H 0.117 0.883 15 C -0.112 4.112 16 C 0.053 3.947 17 F -0.130 7.130 18 C -0.182 4.182 19 C -0.117 4.117 20 C -0.146 4.146 21 C -0.113 4.113 22 C -0.177 4.177 23 C -0.016 4.016 24 O -0.082 6.082 25 H 0.267 0.733 26 H 0.139 0.861 27 H -0.230 1.230 28 H -0.216 1.216 29 H 0.174 0.826 30 H 0.251 0.749 31 H 0.129 0.871 32 H 0.105 0.895 33 H 0.159 0.841 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.083 0.917 38 H 0.126 0.874 39 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 2.362 1.475 0.108 2.787 hybrid contribution 0.104 -0.107 0.637 0.654 sum 2.467 1.368 0.745 2.917 Atomic orbital electron populations 1.86421 1.16368 1.82713 1.52054 1.24156 0.86422 1.12735 0.92303 0.94006 0.76953 0.72939 0.83894 1.21751 1.01230 0.92264 0.92397 1.22616 1.01648 0.95832 0.96101 1.21525 1.10822 0.94893 0.99454 1.17369 0.77277 0.86677 0.80537 1.90785 1.48552 1.37133 1.69283 1.45376 1.56371 1.12851 1.20022 1.21893 0.97768 0.86872 0.92399 0.88781 1.23387 0.96069 1.03463 0.92854 1.21510 0.97761 1.00182 0.89625 0.88311 1.19877 1.02155 0.94648 0.94548 1.17898 1.03725 0.77747 0.95293 1.91447 1.92639 1.32955 1.95927 1.21420 1.03500 0.97423 0.95901 1.21372 0.97263 0.92275 1.00792 1.21592 0.98932 1.01595 0.92454 1.21203 0.98200 0.93281 0.98572 1.23576 0.96651 1.02884 0.94604 1.25287 0.97758 0.85477 0.93045 1.83737 1.57683 1.39770 1.27010 0.73315 0.86146 1.23050 1.21626 0.82640 0.74911 0.87106 0.89518 0.84072 0.82995 0.83067 0.83189 0.91665 0.87418 0.72560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.28 12.86 -148.98 -1.92 -1.64 16 2 C -0.05 0.04 2.96 71.24 0.21 0.25 16 3 Si 0.82 -2.34 32.09 68.60 2.20 -0.14 16 4 C -0.03 -0.18 6.22 24.76 0.15 -0.02 16 5 C -0.14 -1.24 10.90 23.65 0.26 -0.98 16 6 C -0.26 -1.67 6.31 -18.99 -0.12 -1.79 16 7 C 0.59 4.90 7.81 86.65 0.68 5.58 16 8 O -0.58 -9.91 16.58 -4.09 -0.07 -9.97 16 9 N -0.69 -0.22 5.25 -443.34 -2.33 -2.55 16 10 C 0.12 -0.01 4.32 45.52 0.20 0.19 16 11 H 0.09 0.34 7.47 -2.39 -0.02 0.32 16 12 C -0.12 0.47 7.29 31.12 0.23 0.70 16 13 C -0.07 0.13 3.78 -11.02 -0.04 0.09 16 14 H 0.10 -0.15 7.45 -2.38 -0.02 -0.17 16 15 C -0.11 -0.06 5.29 -19.82 -0.10 -0.16 16 16 C 0.07 0.25 7.25 22.38 0.16 0.42 16 17 F -0.15 -0.90 16.37 44.97 0.74 -0.16 16 18 C -0.16 -0.18 10.03 22.31 0.22 0.05 16 19 C -0.10 0.21 10.04 22.26 0.22 0.43 16 20 C -0.13 0.40 10.04 22.27 0.22 0.62 16 21 C -0.09 0.22 8.62 22.26 0.19 0.41 16 22 C -0.14 0.14 7.25 31.12 0.23 0.37 16 23 C 0.05 0.02 11.61 67.40 0.78 0.80 16 24 O -0.19 -0.98 8.90 4.47 0.04 -0.94 16 25 H 0.41 -5.09 8.74 -74.06 -0.65 -5.74 16 26 H 0.12 -0.75 7.96 -2.38 -0.02 -0.77 16 27 H -0.30 -1.80 7.11 99.48 0.71 -1.09 16 28 H -0.29 -0.87 7.11 99.48 0.71 -0.16 16 29 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 30 H 0.41 -2.56 7.67 -92.71 -0.71 -3.27 16 31 H 0.11 -0.60 7.73 -2.39 -0.02 -0.62 16 32 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 34 H 0.15 -1.00 8.06 -2.91 -0.02 -1.02 16 35 H 0.15 -1.15 8.06 -2.91 -0.02 -1.17 16 36 H 0.15 -0.93 6.64 -2.92 -0.02 -0.95 16 37 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.11 -0.33 6.30 -2.39 -0.02 -0.34 16 39 H 0.26 -2.77 7.47 -2.91 -0.02 -2.79 16 Total: 0.00 -27.34 341.96 1.95 -25.39 By element: Atomic # 1 Polarization: -16.72 SS G_CDS: -0.21 Total: -16.93 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 3.49 Total: 6.94 kcal Atomic # 7 Polarization: -0.22 SS G_CDS: -2.33 Total: -2.55 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -1.94 Total: -12.55 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 0.74 Total: -0.16 kcal Atomic # 14 Polarization: -2.34 SS G_CDS: 2.20 Total: -0.14 kcal Total: -27.34 1.95 -25.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705094_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.596 kcal (2) G-P(sol) polarization free energy of solvation -27.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds