Wall clock time and date at job start Mon Mar 8 2021 01:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86299 * 109.47308 * 2 1 4 4 C 1.50700 * 109.46860 * 240.00011 * 2 1 3 5 5 C 1.35448 * 125.56590 * 119.97742 * 4 2 1 6 6 C 1.39836 * 107.86743 * 180.02562 * 5 4 2 7 7 C 1.37878 * 107.08378 * 0.02562 * 6 5 4 8 8 C 1.46674 * 126.23122 * 179.97438 * 7 6 5 9 9 O 1.21696 * 120.00476 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99738 * 180.02562 * 8 7 6 11 11 C 1.46495 * 119.99923 * 180.02562 * 10 8 7 12 12 H 1.09009 * 112.85301 * 336.20012 * 11 10 8 13 13 C 1.53952 * 113.61457 * 107.46753 * 11 10 8 14 14 C 1.53794 * 87.01667 * 89.20210 * 13 11 10 15 15 H 1.08994 * 113.61002 * 270.76986 * 14 13 11 16 16 C 1.50694 * 113.61214 * 139.95418 * 14 13 11 17 17 C 1.38440 * 120.01195 * 140.86683 * 16 14 13 18 18 F 1.35102 * 120.02757 * 0.24616 * 17 16 14 19 19 C 1.38485 * 119.94872 * 179.97438 * 17 16 14 20 20 C 1.38168 * 119.97332 * 359.97438 * 19 17 16 21 21 C 1.38265 * 120.02977 * 0.02562 * 20 19 17 22 22 C 1.38220 * 120.01674 * 320.85981 * 16 14 13 23 23 C 1.53781 * 87.17141 * 25.36381 * 14 13 11 24 24 N 1.35540 * 125.56265 * 300.28442 * 4 2 1 25 25 H 0.96704 * 114.00042 * 300.00670 * 1 2 3 26 26 H 1.09000 * 109.46769 * 120.00278 * 2 1 3 27 27 H 1.48496 * 110.00020 * 178.68502 * 3 2 1 28 28 H 1.48504 * 109.99810 * 300.00080 * 3 2 1 29 29 H 1.07999 * 126.06399 * 0.02562 * 5 4 2 30 30 H 1.07993 * 126.45652 * 180.02562 * 6 5 4 31 31 H 0.96998 * 120.00066 * 0.02562 * 10 8 7 32 32 H 1.08994 * 113.66588 * 334.67912 * 13 11 10 33 33 H 1.09000 * 113.61779 * 203.71648 * 13 11 10 34 34 H 1.08007 * 120.01077 * 179.97438 * 19 17 16 35 35 H 1.08002 * 119.98600 * 180.02562 * 20 19 17 36 36 H 1.08001 * 119.97899 * 179.97438 * 21 20 19 37 37 H 1.08000 * 119.98716 * 0.02562 * 22 16 14 38 38 H 1.08997 * 113.61837 * 89.15682 * 23 14 13 39 39 H 1.09007 * 113.61120 * 219.98097 * 23 14 13 40 40 H 0.97001 * 125.67383 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7129 -0.1635 -2.1920 6 6 2.9562 -1.1457 -3.1573 7 6 2.3010 -2.2875 -2.7474 8 6 2.2767 -3.5734 -3.4524 9 8 2.8750 -3.7022 -4.5042 10 7 1.5916 -4.6126 -2.9352 11 6 1.5678 -5.8972 -3.6390 12 1 1.7608 -5.7983 -4.7073 13 6 2.4115 -6.9897 -2.9573 14 6 1.1509 -7.3482 -2.1526 15 1 1.0543 -6.7906 -1.2211 16 6 0.9526 -8.8309 -1.9703 17 6 0.4849 -9.3239 -0.7642 18 9 0.2013 -8.4758 0.2485 19 6 0.3027 -10.6866 -0.5983 20 6 0.5872 -11.5526 -1.6367 21 6 1.0542 -11.0591 -2.8409 22 6 1.2374 -9.6992 -3.0073 23 6 0.3341 -6.7555 -3.3130 24 7 1.6698 -1.9992 -1.5586 25 1 -0.3933 0.4418 0.7650 26 1 1.7923 -0.5139 0.8900 27 1 3.5346 1.7702 0.0320 28 1 1.5615 2.4678 -1.2085 29 1 3.0826 0.8511 -2.2100 30 1 3.5460 -1.0313 -4.0546 31 1 1.1143 -4.5099 -2.0970 32 1 3.2233 -6.5972 -2.3450 33 1 2.7352 -7.7787 -3.6361 34 1 -0.0618 -11.0724 0.3424 35 1 0.4448 -12.6154 -1.5077 36 1 1.2768 -11.7368 -3.6519 37 1 1.6025 -9.3150 -3.9483 38 1 0.0889 -7.4803 -4.0893 39 1 -0.5294 -6.1754 -2.9875 40 1 1.1288 -2.6161 -1.0411 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705094_6580494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 01:59:39 Heat of formation + Delta-G solvation = -10.764788 kcal Electronic energy + Delta-G solvation = -25387.684976 eV Core-core repulsion = 21471.005060 eV Total energy + Delta-G solvation = -3916.679916 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.95683 -42.69575 -41.44362 -40.09519 -38.77221 -37.64949 -34.91326 -32.49822 -31.97878 -31.49077 -31.30126 -27.32736 -26.82463 -26.06877 -24.04796 -23.39553 -22.66662 -21.77052 -21.35065 -20.27909 -19.77994 -18.72849 -18.46721 -17.54493 -17.30936 -16.93225 -16.77966 -16.68213 -16.45755 -15.88521 -15.51777 -15.37070 -15.22529 -15.09771 -14.88612 -14.69418 -14.41194 -14.16317 -13.97492 -13.87663 -13.56308 -13.55388 -13.09244 -13.07234 -12.74145 -12.41994 -12.05972 -11.99919 -11.85726 -11.45903 -11.33415 -10.49884 -10.36351 -10.27333 -9.91401 -9.61441 -9.41475 -4.93994 0.12988 0.15633 0.21638 1.17347 1.34915 1.74337 1.79030 1.98463 2.08927 2.10813 2.57270 3.21707 3.27452 3.34449 3.52359 3.54442 3.65590 3.77857 3.79652 3.86524 4.00977 4.04274 4.11991 4.14390 4.32565 4.35333 4.38286 4.52329 4.66546 4.70572 4.75321 4.78790 4.85853 4.89338 4.93891 4.99468 5.07756 5.20610 5.30632 5.40911 5.45600 5.48357 5.57904 5.92239 6.13432 6.31723 6.82787 6.90007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.064 4.064 3 Si 0.813 3.187 4 C 0.069 3.931 5 C -0.230 4.230 6 C -0.116 4.116 7 C -0.062 4.062 8 C 0.595 3.405 9 O -0.564 6.564 10 N -0.700 5.700 11 C 0.115 3.885 12 H 0.098 0.902 13 C -0.136 4.136 14 C -0.072 4.072 15 H 0.096 0.904 16 C -0.112 4.112 17 C 0.072 3.928 18 F -0.151 7.151 19 C -0.163 4.163 20 C -0.099 4.099 21 C -0.128 4.128 22 C -0.094 4.094 23 C -0.122 4.122 24 N -0.507 5.507 25 H 0.410 0.590 26 H 0.106 0.894 27 H -0.289 1.289 28 H -0.300 1.300 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.408 0.592 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.142 0.858 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.181 -1.609 5.892 6.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.173 4.173 3 Si 0.717 3.283 4 C -0.050 4.050 5 C -0.254 4.254 6 C -0.142 4.142 7 C -0.176 4.176 8 C 0.384 3.616 9 O -0.443 6.443 10 N -0.350 5.350 11 C 0.010 3.990 12 H 0.116 0.884 13 C -0.175 4.175 14 C -0.091 4.091 15 H 0.114 0.886 16 C -0.113 4.113 17 C 0.053 3.947 18 F -0.130 7.130 19 C -0.182 4.182 20 C -0.117 4.117 21 C -0.145 4.145 22 C -0.112 4.112 23 C -0.159 4.159 24 N -0.105 5.105 25 H 0.263 0.737 26 H 0.124 0.876 27 H -0.216 1.216 28 H -0.228 1.228 29 H 0.162 0.838 30 H 0.166 0.834 31 H 0.244 0.756 32 H 0.084 0.916 33 H 0.128 0.872 34 H 0.160 0.840 35 H 0.170 0.830 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.131 0.869 39 H 0.101 0.899 40 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -2.327 -1.572 4.298 5.134 hybrid contribution -0.290 -0.555 0.565 0.843 sum -2.617 -2.127 4.863 5.918 Atomic orbital electron populations 1.86418 1.16643 1.82613 1.51964 1.24682 0.86312 1.11565 0.94749 0.94209 0.77050 0.72904 0.84120 1.20514 1.01268 0.84761 0.98482 1.20725 1.07615 1.00420 0.96688 1.21428 1.01137 0.91311 1.00364 1.20303 1.08834 0.96371 0.92043 1.17078 0.78400 0.82331 0.83823 1.90842 1.45952 1.83621 1.23861 1.45441 1.52320 1.10748 1.26519 1.21966 0.98007 0.81584 0.97417 0.88433 1.23593 0.96222 0.98471 0.99187 1.21494 0.97741 0.90868 0.98957 0.88599 1.19865 1.01878 0.96650 0.92873 1.17905 1.03081 0.88168 0.85554 1.91445 1.91568 1.70890 1.59104 1.21418 1.03432 0.91365 1.01976 1.21375 0.97039 1.00936 0.92317 1.21594 0.98816 0.95743 0.98388 1.21199 0.98265 0.93037 0.98705 1.23401 0.96217 0.98393 0.97920 1.41870 1.39138 1.11292 1.18152 0.73709 0.87589 1.21616 1.22789 0.83781 0.83360 0.75586 0.91568 0.87241 0.84030 0.82964 0.83030 0.83144 0.86901 0.89857 0.72895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 2.53 12.86 -148.98 -1.92 0.62 16 2 C -0.06 0.26 3.07 71.24 0.22 0.48 16 3 Si 0.81 -3.58 30.54 68.60 2.10 -1.49 16 4 C 0.07 0.23 6.51 41.34 0.27 0.50 16 5 C -0.23 -1.65 9.32 22.01 0.21 -1.44 16 6 C -0.12 -1.09 10.65 22.57 0.24 -0.85 16 7 C -0.06 -0.44 7.06 40.35 0.28 -0.16 16 8 C 0.60 4.95 7.79 86.44 0.67 5.62 16 9 O -0.56 -9.12 16.48 -4.34 -0.07 -9.20 16 10 N -0.70 -0.62 5.26 -443.71 -2.33 -2.95 16 11 C 0.12 -0.01 4.33 45.58 0.20 0.19 16 12 H 0.10 0.31 7.46 -2.38 -0.02 0.30 16 13 C -0.14 0.18 7.27 31.18 0.23 0.41 16 14 C -0.07 0.13 3.78 -11.01 -0.04 0.09 16 15 H 0.10 -0.12 7.43 -2.39 -0.02 -0.14 16 16 C -0.11 -0.03 5.29 -19.82 -0.10 -0.14 16 17 C 0.07 0.24 7.25 22.38 0.16 0.40 16 18 F -0.15 -0.87 16.35 44.97 0.74 -0.13 16 19 C -0.16 -0.12 10.03 22.31 0.22 0.10 16 20 C -0.10 0.24 10.04 22.26 0.22 0.46 16 21 C -0.13 0.44 10.04 22.27 0.22 0.66 16 22 C -0.09 0.25 8.54 22.26 0.19 0.44 16 23 C -0.12 0.45 7.29 31.12 0.23 0.67 16 24 N -0.51 -0.87 5.99 -171.93 -1.03 -1.90 16 25 H 0.41 -6.19 8.74 -74.05 -0.65 -6.84 16 26 H 0.11 -0.98 7.96 -2.39 -0.02 -1.00 16 27 H -0.29 -0.49 7.11 99.48 0.71 0.22 16 28 H -0.30 -1.29 7.11 99.48 0.71 -0.59 16 29 H 0.14 0.83 6.17 -2.91 -0.02 0.81 16 30 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.41 -1.80 7.83 -92.71 -0.73 -2.53 16 32 H 0.07 0.07 8.14 -2.39 -0.02 0.06 16 33 H 0.11 -0.39 6.40 -2.39 -0.02 -0.40 16 34 H 0.14 -0.23 8.06 -2.91 -0.02 -0.25 16 35 H 0.15 -1.05 8.06 -2.91 -0.02 -1.08 16 36 H 0.15 -1.20 8.06 -2.91 -0.02 -1.23 16 37 H 0.15 -1.00 6.73 -2.91 -0.02 -1.02 16 38 H 0.11 -0.62 7.64 -2.39 -0.02 -0.63 16 39 H 0.08 -0.36 8.14 -2.38 -0.02 -0.38 16 40 H 0.43 -1.93 8.19 -92.71 -0.76 -2.69 16 Total: 0.00 -23.57 343.03 -0.08 -23.65 By element: Atomic # 1 Polarization: -15.04 SS G_CDS: -0.98 Total: -16.02 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 3.42 Total: 7.42 kcal Atomic # 7 Polarization: -1.49 SS G_CDS: -3.36 Total: -4.85 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -1.99 Total: -8.58 kcal Atomic # 9 Polarization: -0.87 SS G_CDS: 0.74 Total: -0.13 kcal Atomic # 14 Polarization: -3.58 SS G_CDS: 2.10 Total: -1.49 kcal Total: -23.57 -0.08 -23.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705094_6580494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.887 kcal (2) G-P(sol) polarization free energy of solvation -23.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds