Wall clock time and date at job start Mon Mar 8 2021 02:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37936 * 120.07040 * 2 1 4 4 C 1.38386 * 120.14039 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.84794 * 179.97438 * 4 3 2 6 6 C 1.38329 * 120.29559 * 359.97438 * 4 3 2 7 7 C 1.50705 * 119.92917 * 179.97438 * 6 4 3 8 8 O 1.42900 * 109.47063 * 284.99941 * 7 6 4 9 9 Si 1.86300 * 109.47083 * 165.00498 * 7 6 4 10 10 C 1.37984 * 120.14440 * 359.74460 * 6 4 3 11 11 C 1.39555 * 119.85196 * 0.53122 * 10 6 4 12 12 C 1.47848 * 120.14638 * 179.74719 * 11 10 6 13 13 O 1.21550 * 119.99937 * 173.74697 * 12 11 10 14 14 N 1.34769 * 119.99605 * 353.74149 * 12 11 10 15 15 C 1.46506 * 119.99895 * 180.02562 * 14 12 11 16 16 H 1.09000 * 112.90602 * 336.24966 * 15 14 12 17 17 C 1.53772 * 113.61645 * 107.50192 * 15 14 12 18 18 C 1.53776 * 87.08238 * 89.11895 * 17 15 14 19 19 H 1.09004 * 113.68794 * 270.87200 * 18 17 15 20 20 C 1.50699 * 113.61746 * 139.98468 * 18 17 15 21 21 C 1.38436 * 120.01786 * 142.47988 * 20 18 17 22 22 F 1.35103 * 120.02141 * 0.04165 * 21 20 18 23 23 C 1.38483 * 119.95184 * 180.02562 * 21 20 18 24 24 C 1.38178 * 119.96998 * 359.97438 * 23 21 20 25 25 C 1.38264 * 120.02756 * 0.02562 * 24 23 21 26 26 C 1.38216 * 120.05219 * 359.97438 * 25 24 23 27 27 C 1.53774 * 87.08168 * 25.42913 * 18 17 15 28 28 H 1.09003 * 109.46900 * 263.39050 * 1 2 3 29 29 H 1.09001 * 109.47180 * 23.39272 * 1 2 3 30 30 H 1.09002 * 109.47310 * 143.39134 * 1 2 3 31 31 H 1.08000 * 119.92904 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.47269 * 90.00581 * 5 4 3 33 33 H 1.09007 * 109.47006 * 209.99957 * 5 4 3 34 34 H 1.08996 * 109.47847 * 330.00106 * 5 4 3 35 35 H 1.08996 * 109.46842 * 44.99939 * 7 6 4 36 36 H 0.96694 * 114.00293 * 179.97438 * 8 7 6 37 37 H 1.48493 * 110.00236 * 59.99714 * 9 7 6 38 38 H 1.48505 * 109.99766 * 181.32177 * 9 7 6 39 39 H 1.07999 * 120.07548 * 180.24821 * 10 6 4 40 40 H 0.96998 * 120.00419 * 0.02562 * 14 12 11 41 41 H 1.09003 * 113.61925 * 334.56628 * 17 15 14 42 42 H 1.09006 * 113.61744 * 203.66545 * 17 15 14 43 43 H 1.07994 * 120.01413 * 179.97438 * 23 21 20 44 44 H 1.08005 * 119.98061 * 180.27904 * 24 23 21 45 45 H 1.08000 * 119.97434 * 180.02562 * 25 24 23 46 46 H 1.08004 * 119.98745 * 180.02562 * 26 25 24 47 47 H 1.09008 * 113.60862 * 89.11909 * 27 18 17 48 48 H 1.08997 * 113.62011 * 220.01763 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1937 0.0000 4 6 3.5820 1.1954 -0.0005 5 6 4.3305 2.5034 -0.0011 6 6 4.2813 0.0019 -0.0005 7 6 5.7883 0.0134 -0.0017 8 8 6.2609 0.3651 -1.3036 9 14 6.4225 -1.6783 0.4530 10 6 3.6021 -1.1992 0.0053 11 6 2.2066 -1.2080 0.0000 12 6 1.4722 -2.4912 0.0006 13 8 0.2617 -2.4987 0.1107 14 7 2.1450 -3.6526 -0.1210 15 6 1.4172 -4.9242 -0.1210 16 1 0.4498 -4.8593 0.3769 17 6 1.3555 -5.5986 -1.5016 18 6 2.6769 -6.2938 -1.1339 19 1 3.5636 -5.7234 -1.4105 20 6 2.7455 -7.7328 -1.5761 21 6 3.9374 -8.2567 -2.0467 22 9 5.0400 -7.4785 -2.1089 23 6 3.9987 -9.5791 -2.4532 24 6 2.8705 -10.3743 -2.3881 25 6 1.6806 -9.8500 -1.9180 26 6 1.6183 -8.5302 -1.5120 27 6 2.2674 -6.1204 0.3381 28 1 -0.3633 -0.1183 1.0209 29 1 -0.3633 0.9432 -0.4080 30 1 -0.3634 -0.8249 -0.6128 31 1 1.6582 2.1290 0.0004 32 1 4.5114 2.8190 1.0264 33 1 5.2832 2.3766 -0.5153 34 1 3.7384 3.2607 -0.5148 35 1 6.1466 0.7431 0.7243 36 1 7.2246 0.3925 -1.3781 37 1 5.9409 -2.6823 -0.5293 38 1 7.9072 -1.6720 0.4865 39 1 4.1491 -2.1303 0.0093 40 1 3.1110 -3.6467 -0.2086 41 1 1.4463 -4.9000 -2.3334 42 1 0.5172 -6.2861 -1.6146 43 1 4.9279 -9.9887 -2.8208 44 1 2.9192 -11.4069 -2.7009 45 1 0.7995 -10.4723 -1.8672 46 1 0.6884 -8.1219 -1.1445 47 1 1.6784 -6.9507 0.7281 48 1 3.0944 -5.8432 0.9917 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705094_9599494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:00:01 Heat of formation + Delta-G solvation = -26.562499 kcal Electronic energy + Delta-G solvation = -31271.355046 eV Core-core repulsion = 26980.114622 eV Total energy + Delta-G solvation = -4291.240424 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.157 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -49.96641 -41.91613 -41.00888 -39.90227 -38.79507 -37.72594 -35.06937 -34.46358 -33.28449 -31.78961 -31.43751 -29.38861 -28.54752 -26.77966 -26.34024 -25.50038 -23.98247 -23.65712 -23.00638 -22.32845 -20.98978 -20.13689 -18.96280 -18.59018 -18.54970 -17.51932 -17.42681 -17.05922 -16.70184 -16.62081 -16.37525 -16.18260 -16.17070 -15.42339 -15.32532 -15.09794 -14.96780 -14.82544 -14.65222 -14.48936 -14.19601 -14.05767 -14.00540 -13.83873 -13.49755 -13.43902 -13.17443 -13.04652 -12.97510 -12.85173 -12.71130 -12.60643 -12.38662 -11.97043 -11.92568 -11.89459 -11.79596 -11.28275 -10.76859 -10.49165 -10.23170 -9.91746 -9.89723 -9.62678 -9.59872 -5.00111 -0.26893 0.14881 0.15433 0.22336 1.23037 1.51361 1.68154 1.86849 1.98191 2.57725 2.59744 3.23663 3.29226 3.37706 3.53247 3.54468 3.62241 3.64436 3.75365 3.79990 3.82093 3.89461 4.05697 4.10805 4.14165 4.19306 4.33810 4.36196 4.42677 4.51017 4.56708 4.58538 4.68526 4.70752 4.77578 4.78964 4.81066 4.84186 4.90691 4.93095 4.95963 5.03634 5.07124 5.09386 5.15257 5.22509 5.27070 5.38416 5.46424 5.47219 5.48545 5.56359 5.79990 5.92926 6.36275 6.57197 7.07534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.024 4.024 3 C -0.136 4.136 4 C -0.031 4.031 5 C -0.124 4.124 6 C -0.100 4.100 7 C -0.077 4.077 8 O -0.552 6.552 9 Si 0.741 3.259 10 C -0.076 4.076 11 C -0.161 4.161 12 C 0.562 3.438 13 O -0.555 6.555 14 N -0.705 5.705 15 C 0.118 3.882 16 H 0.103 0.897 17 C -0.138 4.138 18 C -0.078 4.078 19 H 0.087 0.913 20 C -0.111 4.111 21 C 0.068 3.932 22 F -0.154 7.154 23 C -0.163 4.163 24 C -0.099 4.099 25 C -0.126 4.126 26 C -0.093 4.093 27 C -0.121 4.121 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.150 0.850 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.395 0.605 37 H -0.288 1.288 38 H -0.281 1.281 39 H 0.137 0.863 40 H 0.406 0.594 41 H 0.061 0.939 42 H 0.112 0.888 43 H 0.141 0.859 44 H 0.153 0.847 45 H 0.154 0.846 46 H 0.153 0.847 47 H 0.115 0.885 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.645 -1.039 3.176 3.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.025 4.025 3 C -0.154 4.154 4 C -0.031 4.031 5 C -0.181 4.181 6 C -0.100 4.100 7 C -0.186 4.186 8 O -0.362 6.362 9 Si 0.646 3.354 10 C -0.094 4.094 11 C -0.164 4.164 12 C 0.351 3.649 13 O -0.435 6.435 14 N -0.356 5.356 15 C 0.013 3.987 16 H 0.121 0.879 17 C -0.177 4.177 18 C -0.096 4.096 19 H 0.106 0.894 20 C -0.111 4.111 21 C 0.049 3.951 22 F -0.133 7.133 23 C -0.182 4.182 24 C -0.117 4.117 25 C -0.144 4.144 26 C -0.111 4.111 27 C -0.159 4.159 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.168 0.832 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.246 0.754 37 H -0.215 1.215 38 H -0.208 1.208 39 H 0.154 0.846 40 H 0.242 0.758 41 H 0.079 0.921 42 H 0.130 0.870 43 H 0.158 0.842 44 H 0.171 0.829 45 H 0.172 0.828 46 H 0.171 0.829 47 H 0.134 0.866 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.687 -1.683 2.897 3.420 hybrid contribution 1.703 0.638 -1.205 2.182 sum 2.390 -1.045 1.692 3.109 Atomic orbital electron populations 1.21027 0.89786 1.03216 1.03311 1.20248 0.97168 0.91810 0.93306 1.21218 0.93589 0.98087 1.02471 1.20281 0.93630 0.95949 0.93261 1.21009 1.00665 0.92603 1.03786 1.19202 0.94336 0.92695 1.03757 1.24823 0.93284 1.12210 0.88257 1.86569 1.28360 1.91133 1.30149 0.94390 0.78523 0.74482 0.87984 1.21253 0.92876 0.98261 0.96995 1.19646 0.93488 0.93060 1.10255 1.18380 0.86819 0.84152 0.75528 1.90724 1.14645 1.87402 1.50741 1.45616 1.10965 1.05080 1.73939 1.21886 0.97048 0.82218 0.97529 0.87897 1.23580 0.97425 0.99335 0.97322 1.21506 0.99025 0.91291 0.97809 0.89433 1.19879 0.92628 0.96943 1.01689 1.17957 0.83228 0.90043 1.03847 1.91443 1.52341 1.74968 1.94554 1.21406 1.01563 0.92277 1.02946 1.21378 0.91700 1.00867 0.97728 1.21603 0.99010 0.95612 0.98159 1.21208 0.97854 0.93629 0.98367 1.23409 1.00254 0.97498 0.94753 0.90708 0.90715 0.90519 0.83250 0.88993 0.90417 0.90498 0.88242 0.75446 1.21478 1.20762 0.84558 0.75751 0.92050 0.87023 0.84161 0.82903 0.82845 0.82912 0.86650 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 8.73 71.24 0.62 -0.02 16 2 C -0.02 -0.14 5.91 -19.61 -0.12 -0.26 16 3 C -0.14 -0.35 9.31 22.23 0.21 -0.14 16 4 C -0.03 -0.06 5.89 -19.81 -0.12 -0.17 16 5 C -0.12 0.30 9.31 71.24 0.66 0.97 16 6 C -0.10 -0.22 5.29 -19.90 -0.11 -0.32 16 7 C -0.08 0.13 1.87 71.24 0.13 0.26 16 8 O -0.55 -0.26 11.89 -148.98 -1.77 -2.03 16 9 Si 0.74 -1.89 30.18 68.60 2.07 0.18 16 10 C -0.08 -0.22 8.13 22.53 0.18 -0.03 16 11 C -0.16 -0.97 5.87 -20.09 -0.12 -1.09 16 12 C 0.56 4.16 7.70 86.79 0.67 4.83 16 13 O -0.56 -7.03 12.94 -3.87 -0.05 -7.08 16 14 N -0.70 -1.63 5.21 -442.93 -2.31 -3.94 16 15 C 0.12 0.04 4.32 45.51 0.20 0.24 16 16 H 0.10 0.24 7.47 -2.39 -0.02 0.22 16 17 C -0.14 0.01 7.25 31.12 0.23 0.24 16 18 C -0.08 -0.02 3.78 -11.02 -0.04 -0.06 16 19 H 0.09 0.22 7.45 -2.38 -0.02 0.20 16 20 C -0.11 -0.19 5.29 -19.82 -0.10 -0.30 16 21 C 0.07 0.34 7.25 22.38 0.16 0.51 16 22 F -0.15 -1.29 16.36 44.97 0.74 -0.56 16 23 C -0.16 -0.33 10.03 22.31 0.22 -0.10 16 24 C -0.10 0.17 10.04 22.26 0.22 0.39 16 25 C -0.13 0.38 10.04 22.27 0.22 0.60 16 26 C -0.09 0.18 8.61 22.26 0.19 0.38 16 27 C -0.12 0.36 7.29 31.12 0.23 0.58 16 28 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.13 8.04 -2.39 -0.02 0.11 16 30 H 0.08 0.74 5.85 -2.39 -0.01 0.73 16 31 H 0.15 -0.24 8.06 -2.91 -0.02 -0.26 16 32 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.08 -0.13 6.18 -2.38 -0.01 -0.14 16 34 H 0.08 -0.26 8.08 -2.39 -0.02 -0.28 16 35 H 0.10 -0.60 7.37 -2.39 -0.02 -0.62 16 36 H 0.39 -2.90 8.74 -74.06 -0.65 -3.55 16 37 H -0.29 -0.90 6.75 99.48 0.67 -0.23 16 38 H -0.28 -0.42 7.11 99.48 0.71 0.29 16 39 H 0.14 -0.06 3.28 -2.91 -0.01 -0.07 16 40 H 0.41 -0.29 6.77 -92.71 -0.63 -0.92 16 41 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.11 -0.34 6.31 -2.38 -0.02 -0.35 16 43 H 0.14 -0.04 8.06 -2.91 -0.02 -0.06 16 44 H 0.15 -0.97 8.06 -2.91 -0.02 -1.00 16 45 H 0.15 -1.20 8.06 -2.91 -0.02 -1.22 16 46 H 0.15 -0.98 6.66 -2.91 -0.02 -1.00 16 47 H 0.12 -0.63 7.72 -2.38 -0.02 -0.65 16 48 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 Total: 0.00 -17.97 387.13 1.97 -16.00 By element: Atomic # 1 Polarization: -8.82 SS G_CDS: -0.25 Total: -9.07 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 3.55 Total: 6.49 kcal Atomic # 7 Polarization: -1.63 SS G_CDS: -2.31 Total: -3.94 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -1.82 Total: -9.11 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.74 Total: -0.56 kcal Atomic # 14 Polarization: -1.89 SS G_CDS: 2.07 Total: 0.18 kcal Total: -17.97 1.97 -16.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705094_9599494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.564 kcal (2) G-P(sol) polarization free energy of solvation -17.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds