Wall clock time and date at job start Mon Mar 8 2021 02:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46698 * 2 1 4 4 C 1.35896 * 117.00241 * 84.95008 * 3 2 1 5 5 C 1.38730 * 120.05620 * 174.27672 * 4 3 2 6 6 C 1.38144 * 119.94563 * 179.70215 * 5 4 3 7 7 C 1.38267 * 120.05441 * 0.58876 * 6 5 4 8 8 C 1.50696 * 119.94611 * 179.70393 * 7 6 5 9 9 O 1.42901 * 109.47165 * 244.97952 * 8 7 6 10 10 Si 1.86301 * 109.47112 * 4.98106 * 8 7 6 11 11 C 1.38271 * 120.10938 * 359.68181 * 7 6 5 12 12 C 1.38144 * 120.05834 * 0.02562 * 11 7 6 13 13 C 1.50690 * 109.47264 * 239.99751 * 2 1 3 14 14 O 1.21279 * 120.00171 * 119.99937 * 13 2 1 15 15 N 1.34779 * 119.99944 * 300.00213 * 13 2 1 16 16 C 1.46503 * 119.99874 * 180.02562 * 15 13 2 17 17 H 1.08998 * 112.85004 * 334.65493 * 16 15 13 18 18 C 1.53780 * 113.61811 * 105.85894 * 16 15 13 19 19 C 1.53954 * 87.01781 * 89.22879 * 18 16 15 20 20 H 1.09005 * 113.61434 * 270.79436 * 19 18 16 21 21 C 1.50706 * 113.66634 * 139.93751 * 19 18 16 22 22 C 1.38233 * 119.99702 * 322.15961 * 21 19 18 23 23 C 1.38229 * 120.00034 * 179.78781 * 22 21 19 24 24 C 1.38236 * 119.99888 * 0.44842 * 23 22 21 25 25 C 1.38233 * 120.00005 * 359.80704 * 24 23 22 26 26 C 1.38226 * 120.00048 * 142.43883 * 21 19 18 27 27 C 1.53781 * 87.11432 * 25.36321 * 19 18 16 28 28 H 1.09002 * 109.47022 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47172 * 300.00296 * 1 2 3 30 30 H 1.08997 * 109.47403 * 60.00481 * 1 2 3 31 31 H 1.08997 * 109.46674 * 119.99664 * 2 1 3 32 32 H 1.07999 * 120.02676 * 359.97438 * 5 4 3 33 33 H 1.07996 * 119.97629 * 180.27216 * 6 5 4 34 34 H 1.09002 * 109.47153 * 124.97913 * 8 7 6 35 35 H 0.96693 * 114.00071 * 59.99758 * 9 8 7 36 36 H 1.48499 * 110.00065 * 179.97438 * 10 8 7 37 37 H 1.48503 * 109.99947 * 301.31632 * 10 8 7 38 38 H 1.08004 * 119.97015 * 180.02562 * 11 7 6 39 39 H 1.07994 * 120.03049 * 179.97438 * 12 11 7 40 40 H 0.97001 * 120.00151 * 359.97438 * 15 13 2 41 41 H 1.08998 * 113.61594 * 203.74565 * 18 16 15 42 42 H 1.08999 * 113.61495 * 334.65254 * 18 16 15 43 43 H 1.08004 * 119.99810 * 0.02562 * 22 21 19 44 44 H 1.08001 * 120.00219 * 180.27768 * 23 22 21 45 45 H 1.07998 * 120.00362 * 179.83230 * 24 23 22 46 46 H 1.08003 * 120.00405 * 180.02562 * 25 24 23 47 47 H 1.08005 * 120.00613 * 359.97388 * 26 21 19 48 48 H 1.08998 * 113.61441 * 220.08802 * 27 19 18 49 49 H 1.08999 * 113.60969 * 89.18999 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.1114 1.9646 1.2061 5 6 2.6774 3.2282 1.2930 6 6 2.7776 3.8561 2.5194 7 6 2.3253 3.2212 3.6614 8 6 2.4419 3.9057 4.9989 9 8 3.3410 3.1720 5.8327 10 14 3.0906 5.6353 4.7569 11 6 1.7659 1.9595 3.5782 12 6 1.6580 1.3298 2.3534 13 6 2.0324 -0.7104 -1.2303 14 8 2.7296 -0.1211 -2.0287 15 7 1.7068 -2.0008 -1.4436 16 6 2.1956 -2.6916 -2.6395 17 1 2.4140 -2.0106 -3.4621 18 6 3.3259 -3.6942 -2.3530 19 6 2.2258 -4.7482 -2.1313 20 1 1.8705 -4.7986 -1.1020 21 6 2.5617 -6.1023 -2.7013 22 6 3.2342 -6.1978 -3.9052 23 6 3.5462 -7.4397 -4.4259 24 6 3.1774 -8.5862 -3.7473 25 6 2.5002 -8.4907 -2.5460 26 6 2.1921 -7.2486 -2.0231 27 6 1.3335 -3.8970 -3.0501 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.0355 3.7224 0.4019 33 1 3.2141 4.8416 2.5870 34 1 1.4607 3.9486 5.4718 35 1 4.2353 3.0936 5.4734 36 1 3.2095 6.3213 6.0685 37 1 4.4137 5.5920 4.0840 38 1 1.4130 1.4658 4.4717 39 1 1.2214 0.3442 2.2890 40 1 1.1494 -2.4723 -0.8049 41 1 3.9581 -3.8981 -3.2172 42 1 3.8975 -3.4627 -1.4543 43 1 3.5194 -5.3021 -4.4371 44 1 4.0756 -7.5144 -5.3643 45 1 3.4187 -9.5565 -4.1554 46 1 2.2124 -9.3864 -2.0156 47 1 1.6630 -7.1740 -1.0845 48 1 0.2991 -3.8291 -2.7134 49 1 1.4201 -4.1566 -4.1052 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705150_10157680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:00:12 Heat of formation + Delta-G solvation = -14.825769 kcal Electronic energy + Delta-G solvation = -29875.132734 eV Core-core repulsion = 25735.173037 eV Total energy + Delta-G solvation = -4139.959697 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.95353 -41.29285 -40.32884 -39.24567 -38.55937 -37.26757 -34.95569 -33.15060 -32.07229 -31.85999 -31.64291 -31.13192 -26.83204 -26.72144 -26.35107 -25.24554 -24.16547 -23.52466 -22.68637 -22.31121 -21.51905 -20.18614 -19.46983 -18.67895 -18.28837 -17.96734 -17.28301 -16.85758 -16.69480 -16.36349 -16.23652 -16.12710 -16.08892 -15.65216 -15.54144 -15.23827 -14.96735 -14.77384 -14.56226 -14.35227 -14.25960 -14.22653 -14.05479 -13.69253 -13.48208 -13.35095 -13.28882 -13.10755 -12.91930 -12.75214 -12.24019 -12.16217 -12.15520 -12.06623 -11.75012 -11.69859 -11.58222 -11.18979 -10.96243 -10.58668 -10.20570 -10.04401 -9.81016 -9.54768 -9.23898 -4.91852 0.23980 0.32366 0.43638 0.50773 1.32696 1.35456 1.46910 1.59674 1.95350 2.45842 2.63942 2.83914 3.41271 3.44654 3.45231 3.63399 3.66480 3.72064 3.72708 3.83316 3.85677 3.92095 3.94138 4.06076 4.15820 4.24845 4.26257 4.31418 4.35082 4.54512 4.56261 4.60139 4.62844 4.64053 4.68134 4.70589 4.75842 4.82230 4.95456 4.99049 4.99311 5.09786 5.12384 5.13967 5.18555 5.19163 5.28553 5.47844 5.48167 5.59600 5.65232 5.67704 5.75036 6.13406 6.24619 6.42244 6.49152 7.06370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.065 3.935 3 O -0.312 6.312 4 C 0.120 3.880 5 C -0.160 4.160 6 C -0.078 4.078 7 C -0.158 4.158 8 C -0.072 4.072 9 O -0.548 6.548 10 Si 0.757 3.243 11 C -0.055 4.055 12 C -0.207 4.207 13 C 0.518 3.482 14 O -0.568 6.568 15 N -0.690 5.690 16 C 0.116 3.884 17 H 0.083 0.917 18 C -0.145 4.145 19 C -0.064 4.064 20 H 0.114 0.886 21 C -0.079 4.079 22 C -0.129 4.129 23 C -0.132 4.132 24 C -0.139 4.139 25 C -0.131 4.131 26 C -0.126 4.126 27 C -0.122 4.122 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.146 0.854 34 H 0.128 0.872 35 H 0.385 0.615 36 H -0.303 1.303 37 H -0.286 1.286 38 H 0.141 0.859 39 H 0.155 0.845 40 H 0.420 0.580 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.137 0.863 48 H 0.093 0.907 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.257 -3.926 1.391 6.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 O -0.226 6.226 4 C 0.075 3.925 5 C -0.179 4.179 6 C -0.096 4.096 7 C -0.158 4.158 8 C -0.182 4.182 9 O -0.357 6.357 10 Si 0.664 3.336 11 C -0.073 4.073 12 C -0.226 4.226 13 C 0.304 3.696 14 O -0.446 6.446 15 N -0.343 5.343 16 C 0.011 3.989 17 H 0.101 0.899 18 C -0.183 4.183 19 C -0.082 4.082 20 H 0.132 0.868 21 C -0.079 4.079 22 C -0.146 4.146 23 C -0.150 4.150 24 C -0.157 4.157 25 C -0.149 4.149 26 C -0.144 4.144 27 C -0.160 4.160 28 H 0.128 0.872 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.151 0.849 33 H 0.163 0.837 34 H 0.146 0.854 35 H 0.234 0.766 36 H -0.231 1.231 37 H -0.213 1.213 38 H 0.159 0.841 39 H 0.172 0.828 40 H 0.258 0.742 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.149 0.851 46 H 0.152 0.848 47 H 0.155 0.845 48 H 0.112 0.888 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.623 -2.910 1.162 5.585 hybrid contribution 0.987 -1.150 0.274 1.540 sum -3.636 -4.060 1.436 5.636 Atomic orbital electron populations 1.22383 0.90269 1.05783 1.04533 1.22409 0.97310 0.82177 0.97563 1.86185 1.81490 1.26930 1.27950 1.19267 0.95755 0.93172 0.84272 1.20575 1.03897 0.94198 0.99213 1.21002 0.97816 0.99604 0.91152 1.20256 1.03474 0.96840 0.95263 1.25059 0.98598 1.04834 0.89682 1.86564 1.25182 1.75384 1.48525 0.94127 0.83463 0.76079 0.79952 1.21012 0.95270 0.93662 0.97388 1.21531 1.06576 1.02601 0.91865 1.20554 0.79601 0.82388 0.87010 1.90753 1.38907 1.67075 1.47875 1.45384 1.53192 1.10387 1.25373 1.21856 0.96102 0.93168 0.87807 0.89891 1.23587 0.96699 0.95182 1.02847 1.21634 0.96888 0.89497 1.00229 0.86765 1.19874 0.98059 0.95066 0.94910 1.21224 0.99224 0.98000 0.96186 1.21416 1.00166 0.92811 1.00581 1.21442 0.99097 0.99213 0.95920 1.21451 0.98691 0.98429 0.96306 1.21337 1.00403 0.92047 1.00625 1.23348 0.99307 0.92352 1.00949 0.87157 0.89483 0.91969 0.85747 0.84863 0.83717 0.85432 0.76582 1.23121 1.21323 0.84116 0.82756 0.74180 0.88851 0.91455 0.85250 0.85127 0.85143 0.84832 0.84516 0.88822 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.18 9.07 71.98 0.65 1.83 16 2 C 0.06 -0.09 2.64 29.85 0.08 -0.01 16 3 O -0.31 -1.99 9.33 -73.35 -0.68 -2.68 16 4 C 0.12 0.44 6.60 22.51 0.15 0.59 16 5 C -0.16 -0.57 9.99 22.37 0.22 -0.35 16 6 C -0.08 -0.04 8.66 22.25 0.19 0.16 16 7 C -0.16 0.03 5.35 -19.85 -0.11 -0.07 16 8 C -0.07 0.08 2.80 71.23 0.20 0.28 16 9 O -0.55 -1.10 12.83 -148.98 -1.91 -3.02 16 10 Si 0.76 -1.09 29.88 68.60 2.05 0.96 16 11 C -0.06 0.05 9.68 22.26 0.22 0.26 16 12 C -0.21 0.23 8.24 22.37 0.18 0.41 16 13 C 0.52 1.76 7.23 87.65 0.63 2.39 16 14 O -0.57 -8.41 16.12 16.01 0.26 -8.15 16 15 N -0.69 2.84 5.16 -440.04 -2.27 0.57 16 16 C 0.12 -0.24 4.29 45.52 0.20 -0.05 16 17 H 0.08 0.27 7.50 -2.39 -0.02 0.25 16 18 C -0.14 0.34 7.27 31.18 0.23 0.56 16 19 C -0.06 0.34 3.87 -10.95 -0.04 0.29 16 20 H 0.11 -0.98 8.09 -2.38 -0.02 -1.00 16 21 C -0.08 0.09 5.29 -19.87 -0.11 -0.02 16 22 C -0.13 -0.02 8.60 22.27 0.19 0.17 16 23 C -0.13 -0.12 10.05 22.27 0.22 0.10 16 24 C -0.14 -0.12 10.05 22.27 0.22 0.10 16 25 C -0.13 -0.01 10.05 22.27 0.22 0.21 16 26 C -0.13 0.12 9.71 22.27 0.22 0.34 16 27 C -0.12 0.73 7.29 31.12 0.23 0.96 16 28 H 0.11 -1.47 7.57 -2.39 -0.02 -1.49 16 29 H 0.09 -0.67 6.91 -2.39 -0.02 -0.69 16 30 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.13 -0.84 6.31 -2.39 -0.02 -0.86 16 32 H 0.13 0.43 8.06 -2.91 -0.02 0.41 16 33 H 0.15 -0.42 4.83 -2.91 -0.01 -0.43 16 34 H 0.13 -0.42 7.96 -2.39 -0.02 -0.44 16 35 H 0.39 -1.14 8.70 -74.06 -0.64 -1.78 16 36 H -0.30 -1.89 7.11 99.48 0.71 -1.19 16 37 H -0.29 -0.80 7.01 99.48 0.70 -0.11 16 38 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 39 H 0.15 -1.05 5.43 -2.91 -0.02 -1.07 16 40 H 0.42 -4.86 8.13 -92.71 -0.75 -5.62 16 41 H 0.09 -0.15 6.34 -2.39 -0.02 -0.17 16 42 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 43 H 0.13 -0.28 6.68 -2.91 -0.02 -0.30 16 44 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 45 H 0.13 -0.27 8.06 -2.91 -0.02 -0.29 16 46 H 0.13 -0.43 8.06 -2.91 -0.02 -0.46 16 47 H 0.14 -0.69 8.06 -2.91 -0.02 -0.72 16 48 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 49 H 0.10 -0.50 7.71 -2.39 -0.02 -0.52 16 Total: 0.00 -23.54 399.09 1.06 -22.48 By element: Atomic # 1 Polarization: -17.95 SS G_CDS: -0.38 Total: -18.33 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 4.00 Total: 8.18 kcal Atomic # 7 Polarization: 2.84 SS G_CDS: -2.27 Total: 0.57 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -2.34 Total: -13.84 kcal Atomic # 14 Polarization: -1.09 SS G_CDS: 2.05 Total: 0.96 kcal Total: -23.54 1.06 -22.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_10157680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.649 kcal (2) G-P(sol) polarization free energy of solvation -23.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds