Wall clock time and date at job start Mon Mar 8 2021 02:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86311 * 109.47087 * 2 1 4 4 C 1.50701 * 109.47383 * 120.00159 * 2 1 3 5 5 C 1.35458 * 126.06540 * 244.97446 * 4 2 1 6 6 N 1.35538 * 108.86978 * 179.78437 * 5 4 2 7 7 C 1.37648 * 108.64325 * 0.38330 * 6 5 4 8 8 C 1.46680 * 126.23601 * 179.89052 * 7 6 5 9 9 O 1.21691 * 120.00287 * 179.68578 * 8 7 6 10 10 N 1.34779 * 119.99242 * 359.68509 * 8 7 6 11 11 C 1.46496 * 119.99390 * 180.02562 * 10 8 7 12 12 H 1.09000 * 112.91246 * 23.74616 * 11 10 8 13 13 C 1.53786 * 113.61518 * 154.99856 * 11 10 8 14 14 C 1.53781 * 87.17350 * 89.15486 * 13 11 10 15 15 H 1.08997 * 113.61223 * 270.84552 * 14 13 11 16 16 C 1.50703 * 113.61417 * 139.93966 * 14 13 11 17 17 C 1.38231 * 119.99840 * 299.72831 * 16 14 13 18 18 C 1.38243 * 119.99645 * 179.74529 * 17 16 14 19 19 C 1.38231 * 120.00049 * 0.52800 * 18 17 16 20 20 C 1.38242 * 119.99914 * 359.74492 * 19 18 17 21 21 C 1.38231 * 120.00008 * 120.00161 * 16 14 13 22 22 C 1.53782 * 87.08260 * 25.39213 * 14 13 11 23 23 C 1.37878 * 107.53249 * 359.62030 * 7 6 5 24 24 H 0.96701 * 113.99974 * 299.99679 * 1 2 3 25 25 H 1.08999 * 109.47499 * 240.00288 * 2 1 3 26 26 H 1.48497 * 109.99730 * 178.68127 * 3 2 1 27 27 H 1.48496 * 109.99741 * 300.00137 * 3 2 1 28 28 H 1.07997 * 125.56635 * 359.97438 * 5 4 2 29 29 H 0.96990 * 125.67593 * 180.26517 * 6 5 4 30 30 H 0.97001 * 120.00492 * 359.97438 * 10 8 7 31 31 H 1.09002 * 113.61357 * 334.56403 * 13 11 10 32 32 H 1.09002 * 113.61608 * 203.74565 * 13 11 10 33 33 H 1.08003 * 120.00202 * 359.97438 * 17 16 14 34 34 H 1.08002 * 120.00013 * 180.29691 * 18 17 16 35 35 H 1.08001 * 120.00334 * 179.77247 * 19 18 17 36 36 H 1.08001 * 119.99836 * 179.97438 * 20 19 18 37 37 H 1.08005 * 120.00129 * 359.97438 * 21 16 14 38 38 H 1.08997 * 113.61668 * 89.11298 * 22 14 13 39 39 H 1.08994 * 113.61387 * 220.02033 * 22 14 13 40 40 H 1.08002 * 126.45326 * 180.19609 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6339 -0.1499 2.2439 6 7 2.9017 -1.1020 3.1707 7 6 2.3692 -2.2964 2.7411 8 6 2.4368 -3.5799 3.4479 9 8 1.9189 -4.5691 2.9639 10 7 3.0726 -3.6636 4.6333 11 6 3.1406 -4.9457 5.3389 12 1 3.0297 -5.8023 4.6742 13 6 4.3392 -5.0594 6.2957 14 6 3.4338 -4.4521 7.3803 15 1 3.4635 -3.3631 7.4143 16 6 3.6073 -5.0864 8.7363 17 6 3.3583 -6.4356 8.9052 18 6 3.5226 -7.0184 10.1479 19 6 3.9253 -6.2499 11.2240 20 6 4.1689 -4.8995 11.0562 21 6 4.0101 -4.3179 9.8123 22 6 2.2411 -5.0113 6.5868 23 6 1.7555 -2.0652 1.5283 24 1 -0.3933 0.4417 0.7651 25 1 1.7924 -0.5138 -0.8900 26 1 3.5346 1.7703 0.0321 27 1 1.5614 2.4679 -1.2085 28 1 2.9296 0.8870 2.3051 29 1 3.3889 -0.9648 3.9981 30 1 3.4857 -2.8752 5.0189 31 1 5.1794 -4.4217 6.0208 32 1 4.6377 -6.0874 6.5014 33 1 3.0389 -7.0350 8.0654 34 1 3.3326 -8.0735 10.2788 35 1 4.0501 -6.7045 12.1957 36 1 4.4832 -4.2990 11.8971 37 1 4.2008 -3.2629 9.6813 38 1 1.9648 -6.0265 6.8712 39 1 1.3875 -4.3347 6.5468 40 1 1.2370 -2.7935 0.9223 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705150_10543058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:00:17 Heat of formation + Delta-G solvation = 32.687079 kcal Electronic energy + Delta-G solvation = -22812.602605 eV Core-core repulsion = 19367.260879 eV Total energy + Delta-G solvation = -3445.341726 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.51275 -41.40064 -40.06097 -38.66768 -37.63030 -34.78418 -32.57641 -31.89278 -31.63690 -30.57989 -26.86806 -26.73921 -25.97954 -24.29140 -23.44065 -22.42329 -21.31598 -20.81464 -20.31177 -19.80690 -18.07593 -17.48906 -17.22608 -16.79213 -16.47254 -16.21050 -16.05704 -15.86397 -15.57040 -15.08784 -15.00694 -14.71659 -14.48059 -14.35779 -14.22192 -14.05862 -13.92934 -13.50555 -13.47370 -13.13164 -12.75410 -12.26497 -12.17776 -11.96934 -11.77689 -11.71796 -11.36103 -11.20809 -10.32870 -10.28580 -9.95778 -9.81493 -9.55803 -9.29163 -4.92777 0.33819 0.43192 0.50345 1.42318 1.52453 1.74380 1.88294 2.10127 2.12974 2.22449 2.83290 3.42600 3.64269 3.68108 3.70687 3.79314 3.91797 3.98580 4.05025 4.15392 4.17816 4.23498 4.30510 4.36615 4.55210 4.61675 4.64176 4.68047 4.74093 4.78680 4.89499 4.93608 4.97563 5.02750 5.09598 5.13226 5.18212 5.45439 5.58132 5.59232 5.64856 5.72373 5.73906 6.12868 6.33451 6.51894 6.91582 7.03162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.053 4.053 3 Si 0.804 3.196 4 C -0.229 4.229 5 C 0.063 3.937 6 N -0.514 5.514 7 C -0.070 4.070 8 C 0.590 3.410 9 O -0.576 6.576 10 N -0.696 5.696 11 C 0.115 3.885 12 H 0.085 0.915 13 C -0.123 4.123 14 C -0.063 4.063 15 H 0.114 0.886 16 C -0.080 4.080 17 C -0.129 4.129 18 C -0.132 4.132 19 C -0.138 4.138 20 C -0.131 4.131 21 C -0.126 4.126 22 C -0.143 4.143 23 C -0.105 4.105 24 H 0.393 0.607 25 H 0.090 0.910 26 H -0.274 1.274 27 H -0.311 1.311 28 H 0.219 0.781 29 H 0.438 0.562 30 H 0.412 0.588 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.930 6.490 6.987 10.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.162 4.162 3 Si 0.709 3.291 4 C -0.235 4.235 5 C -0.075 4.075 6 N -0.112 5.112 7 C -0.183 4.183 8 C 0.380 3.620 9 O -0.455 6.455 10 N -0.347 5.347 11 C 0.009 3.991 12 H 0.103 0.897 13 C -0.161 4.161 14 C -0.081 4.081 15 H 0.132 0.868 16 C -0.080 4.080 17 C -0.147 4.147 18 C -0.150 4.150 19 C -0.156 4.156 20 C -0.148 4.148 21 C -0.144 4.144 22 C -0.181 4.181 23 C -0.133 4.133 24 H 0.243 0.757 25 H 0.108 0.892 26 H -0.200 1.200 27 H -0.240 1.240 28 H 0.235 0.765 29 H 0.279 0.721 30 H 0.249 0.751 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.113 0.887 39 H 0.086 0.914 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.226 6.001 5.884 9.407 hybrid contribution 0.164 -0.812 0.089 0.833 sum 4.390 5.189 5.973 9.048 Atomic orbital electron populations 1.86459 1.18243 1.82404 1.50298 1.24754 0.84495 1.11283 0.95711 0.93939 0.77204 0.73054 0.84899 1.19954 1.09043 0.94331 1.00189 1.22409 1.00353 0.95921 0.88835 1.41849 1.43054 1.06328 1.19926 1.20058 1.11996 0.86703 0.99521 1.17266 0.77638 0.86571 0.80573 1.90851 1.48488 1.37989 1.68167 1.45344 1.56529 1.12495 1.20290 1.21911 0.98066 0.86313 0.92805 0.89664 1.23362 0.96257 1.03202 0.93314 1.21575 0.96339 1.00426 0.89732 0.86814 1.19863 0.99012 0.93791 0.95312 1.21234 1.00578 0.95075 0.97785 1.21421 0.99613 1.00702 0.93233 1.21449 0.99924 0.94677 0.99585 1.21455 0.99888 0.95416 0.98090 1.21334 0.99871 1.00671 0.92505 1.23585 0.97130 1.02647 0.94785 1.21230 1.00313 0.96691 0.95016 0.75685 0.89240 1.20048 1.23956 0.76504 0.72083 0.75072 0.89199 0.88339 0.85256 0.85116 0.85109 0.84760 0.84452 0.88709 0.91361 0.86033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.62 12.88 -148.98 -1.92 -3.53 16 2 C -0.05 -0.03 3.02 71.24 0.22 0.18 16 3 Si 0.80 -3.85 30.60 68.60 2.10 -1.75 16 4 C -0.23 -0.06 5.43 -20.12 -0.11 -0.17 16 5 C 0.06 -0.45 10.45 83.48 0.87 0.42 16 6 N -0.51 3.76 5.99 -183.61 -1.10 2.66 16 7 C -0.07 -0.17 7.06 40.35 0.28 0.12 16 8 C 0.59 3.40 7.79 86.45 0.67 4.07 16 9 O -0.58 -9.17 16.48 -4.32 -0.07 -9.25 16 10 N -0.70 1.79 5.26 -443.70 -2.33 -0.54 16 11 C 0.11 -0.14 4.33 45.58 0.20 0.05 16 12 H 0.09 0.34 7.46 -2.39 -0.02 0.32 16 13 C -0.12 0.66 7.29 31.12 0.23 0.89 16 14 C -0.06 0.32 3.86 -11.01 -0.04 0.28 16 15 H 0.11 -1.00 8.10 -2.39 -0.02 -1.02 16 16 C -0.08 0.10 5.29 -19.87 -0.11 -0.01 16 17 C -0.13 -0.02 8.63 22.27 0.19 0.18 16 18 C -0.13 -0.11 10.05 22.27 0.22 0.12 16 19 C -0.14 -0.09 10.05 22.27 0.22 0.13 16 20 C -0.13 0.03 10.05 22.27 0.22 0.25 16 21 C -0.13 0.16 9.71 22.27 0.22 0.38 16 22 C -0.14 0.30 7.26 31.18 0.23 0.53 16 23 C -0.11 -0.68 10.59 22.57 0.24 -0.44 16 24 H 0.39 -2.40 8.70 -74.06 -0.64 -3.04 16 25 H 0.09 0.35 7.96 -2.39 -0.02 0.33 16 26 H -0.27 0.51 7.11 99.48 0.71 1.22 16 27 H -0.31 -1.39 7.11 99.48 0.71 -0.68 16 28 H 0.22 -3.44 6.21 -2.91 -0.02 -3.45 16 29 H 0.44 -6.74 8.19 -92.72 -0.76 -7.50 16 30 H 0.41 -4.21 7.83 -92.71 -0.73 -4.93 16 31 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 32 H 0.10 -0.44 7.73 -2.39 -0.02 -0.46 16 33 H 0.13 -0.28 6.64 -2.91 -0.02 -0.30 16 34 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 35 H 0.13 -0.30 8.06 -2.91 -0.02 -0.33 16 36 H 0.13 -0.49 8.06 -2.91 -0.02 -0.52 16 37 H 0.14 -0.77 8.06 -2.91 -0.02 -0.79 16 38 H 0.09 -0.15 6.30 -2.39 -0.02 -0.17 16 39 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.12 1.36 8.06 -2.91 -0.02 1.34 16 Total: 0.00 -25.90 337.96 -0.57 -26.47 By element: Atomic # 1 Polarization: -20.04 SS G_CDS: -1.00 Total: -21.03 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 3.76 Total: 6.98 kcal Atomic # 7 Polarization: 5.55 SS G_CDS: -3.43 Total: 2.12 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -1.99 Total: -12.78 kcal Atomic # 14 Polarization: -3.85 SS G_CDS: 2.10 Total: -1.75 kcal Total: -25.90 -0.57 -26.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_10543058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.154 kcal (2) G-P(sol) polarization free energy of solvation -25.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds