Wall clock time and date at job start Mon Mar 8 2021 02:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35452 * 125.56558 * 2 1 4 4 C 1.50701 * 126.06628 * 0.02562 * 3 2 1 5 5 O 1.42905 * 109.46772 * 114.54760 * 4 3 2 6 6 Si 1.86299 * 109.47363 * 234.54439 * 4 3 2 7 7 C 1.39835 * 107.86618 * 179.76155 * 3 2 1 8 8 C 1.50703 * 126.46169 * 180.26041 * 7 3 2 9 9 C 1.37874 * 107.08505 * 0.41698 * 7 3 2 10 10 C 1.46674 * 126.23534 * 179.84829 * 9 7 3 11 11 O 1.21693 * 119.99930 * 359.71476 * 10 9 7 12 12 N 1.34778 * 120.00328 * 179.71769 * 10 9 7 13 13 C 1.46499 * 120.00121 * 179.97438 * 12 10 9 14 14 H 1.08995 * 112.90870 * 336.25328 * 13 12 10 15 15 C 1.54061 * 113.61143 * 107.61499 * 13 12 10 16 16 C 1.53782 * 87.07490 * 89.07240 * 15 13 12 17 17 H 1.09005 * 113.68885 * 270.86942 * 16 15 13 18 18 C 1.50701 * 113.61462 * 139.97504 * 16 15 13 19 19 C 1.38231 * 119.99973 * 322.23279 * 18 16 15 20 20 C 1.38233 * 120.00039 * 179.80766 * 19 18 16 21 21 C 1.38243 * 119.99845 * 0.39461 * 20 19 18 22 22 C 1.38236 * 119.99731 * 359.85779 * 21 20 19 23 23 C 1.38228 * 120.00045 * 359.95512 * 22 21 20 24 24 C 1.53776 * 113.61479 * 204.99431 * 13 12 10 25 25 N 1.35540 * 125.56497 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46714 * 275.24443 * 1 2 3 27 27 H 1.09000 * 109.46905 * 35.24007 * 1 2 3 28 28 H 1.08999 * 109.47100 * 155.24242 * 1 2 3 29 29 H 1.08998 * 109.47310 * 354.55011 * 4 3 2 30 30 H 0.96701 * 114.00291 * 60.00377 * 5 4 3 31 31 H 1.48498 * 110.00218 * 180.02562 * 6 4 3 32 32 H 1.48502 * 110.00133 * 301.32158 * 6 4 3 33 33 H 1.08993 * 109.47367 * 270.21354 * 8 7 3 34 34 H 1.09000 * 109.46619 * 30.20890 * 8 7 3 35 35 H 1.09002 * 109.47220 * 150.20545 * 8 7 3 36 36 H 0.97001 * 119.99499 * 359.97438 * 12 10 9 37 37 H 1.09000 * 113.61548 * 334.52783 * 15 13 12 38 38 H 1.08996 * 113.68796 * 203.62575 * 15 13 12 39 39 H 1.07998 * 120.00333 * 0.02562 * 19 18 16 40 40 H 1.08000 * 120.00290 * 180.23430 * 20 19 18 41 41 H 1.07994 * 119.99737 * 179.83793 * 21 20 19 42 42 H 1.08003 * 119.99555 * 179.97438 * 22 21 20 43 43 H 1.08007 * 119.99752 * 180.02562 * 23 22 21 44 44 H 1.08999 * 113.61878 * 156.33452 * 24 13 12 45 45 H 1.09005 * 113.61309 * 25.51571 * 24 13 12 46 46 H 0.96998 * 125.67175 * 359.95190 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 1.8199 2.5321 0.0005 5 8 2.2016 3.1601 1.2261 6 14 2.5907 3.4429 -1.4302 7 6 3.6270 0.6767 0.0055 8 6 4.8487 1.5591 0.0130 9 6 3.6122 -0.7019 -0.0008 10 6 4.7860 -1.5815 -0.0013 11 8 5.9049 -1.1031 -0.0011 12 7 4.6253 -2.9197 -0.0021 13 6 5.7977 -3.7982 -0.0032 14 1 6.6881 -3.3170 -0.4076 15 6 6.0359 -4.5110 1.3417 16 6 5.1259 -5.6344 0.8176 17 1 4.0699 -5.4831 1.0419 18 6 5.6076 -7.0172 1.1738 19 6 6.9604 -7.3013 1.1656 20 6 7.4025 -8.5686 1.4961 21 6 6.4913 -9.5541 1.8271 22 6 5.1381 -9.2713 1.8302 23 6 4.6963 -8.0030 1.5034 24 6 5.5246 -5.1892 -0.5993 25 7 2.2953 -1.1026 -0.0005 26 1 -0.3633 0.0939 1.0234 27 1 -0.3633 0.8393 -0.5930 28 1 -0.3633 -0.9332 -0.4304 29 1 0.7345 2.5546 -0.0967 30 1 3.1562 3.1765 1.3792 31 1 2.1307 4.8548 -1.4405 32 1 4.0712 3.3923 -1.3263 33 1 5.1459 1.7769 -1.0127 34 1 4.6206 2.4908 0.5308 35 1 5.6630 1.0479 0.5266 36 1 3.7334 -3.3011 -0.0019 37 1 5.6225 -3.9777 2.1977 38 1 7.0692 -4.8221 1.4954 39 1 7.6721 -6.5322 0.9043 40 1 8.4597 -8.7895 1.4934 41 1 6.8365 -10.5449 2.0828 42 1 4.4262 -10.0414 2.0884 43 1 3.6391 -7.7820 1.5063 44 1 6.4183 -5.6853 -0.9776 45 1 4.6986 -5.2049 -1.3105 46 1 1.9833 -2.0210 -0.0002 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705150_12297754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:00:31 Heat of formation + Delta-G solvation = 28.028547 kcal Electronic energy + Delta-G solvation = -27173.366244 eV Core-core repulsion = 23416.747271 eV Total energy + Delta-G solvation = -3756.618973 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.162 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.70469 -41.42606 -40.06745 -38.66819 -37.90447 -34.86480 -33.79633 -32.88667 -31.87380 -31.53419 -29.31163 -27.73216 -26.74082 -26.64348 -25.69168 -23.61244 -22.84150 -22.32670 -20.98434 -20.43880 -19.94971 -19.40285 -18.02480 -17.79025 -17.08497 -16.79530 -16.51976 -16.24851 -16.14854 -15.71154 -15.55378 -15.34224 -14.96563 -14.91627 -14.49782 -14.39117 -14.29592 -14.20927 -14.07571 -13.73832 -13.54388 -13.50728 -13.40816 -13.19166 -13.05707 -12.76664 -12.61613 -12.40478 -12.18407 -11.77833 -11.72625 -11.61967 -11.21085 -11.05025 -10.75015 -10.24739 -9.82706 -9.58008 -9.56234 -8.98524 -4.86283 0.33223 0.42103 0.49156 1.28983 1.55423 1.72026 1.90150 2.05959 2.12328 2.23642 2.82255 3.42572 3.52414 3.64351 3.68369 3.77973 3.85297 3.91246 3.94699 4.03981 4.12874 4.14269 4.22469 4.29237 4.36694 4.47890 4.55222 4.57644 4.60590 4.66040 4.68674 4.73571 4.78991 4.82453 4.91305 4.96585 4.98073 5.02014 5.08929 5.12340 5.16824 5.17149 5.27833 5.47550 5.57932 5.63657 5.68710 5.72861 5.84386 6.11685 6.35425 6.50295 6.53307 7.06595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.099 3.901 3 C -0.222 4.222 4 C -0.037 4.037 5 O -0.550 6.550 6 Si 0.736 3.264 7 C -0.081 4.081 8 C -0.094 4.094 9 C -0.073 4.073 10 C 0.591 3.409 11 O -0.565 6.565 12 N -0.699 5.699 13 C 0.118 3.882 14 H 0.089 0.911 15 C -0.143 4.143 16 C -0.064 4.064 17 H 0.110 0.890 18 C -0.080 4.080 19 C -0.128 4.128 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.123 4.123 25 N -0.520 5.520 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.130 0.870 30 H 0.377 0.623 31 H -0.303 1.303 32 H -0.269 1.269 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.409 0.591 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.056 -5.714 -2.463 8.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.021 4.021 3 C -0.228 4.228 4 C -0.148 4.148 5 O -0.358 6.358 6 Si 0.641 3.359 7 C -0.090 4.090 8 C -0.151 4.151 9 C -0.185 4.185 10 C 0.380 3.620 11 O -0.444 6.444 12 N -0.350 5.350 13 C 0.012 3.988 14 H 0.107 0.893 15 C -0.182 4.182 16 C -0.082 4.082 17 H 0.128 0.872 18 C -0.080 4.080 19 C -0.146 4.146 20 C -0.149 4.149 21 C -0.156 4.156 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.161 4.161 25 N -0.118 5.118 26 H 0.102 0.898 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.147 0.853 30 H 0.227 0.773 31 H -0.231 1.231 32 H -0.195 1.195 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.246 0.754 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.118 0.882 45 H 0.107 0.893 46 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -5.368 -4.865 -2.669 7.720 hybrid contribution 0.577 -0.556 1.239 1.476 sum -4.791 -5.421 -1.430 7.374 Atomic orbital electron populations 1.20664 0.84787 1.05623 1.04351 1.20734 0.94888 0.84796 1.01643 1.19441 0.91972 0.95728 1.15669 1.24362 1.05474 0.90922 0.94005 1.86568 1.29129 1.80528 1.39601 0.94426 0.79553 0.77452 0.84449 1.19847 0.94994 0.91837 1.02280 1.20526 0.94936 0.97409 1.02196 1.19800 0.83655 0.93513 1.21517 1.17181 0.87236 0.82007 0.75562 1.90818 1.25780 1.75754 1.52022 1.45373 1.10011 1.04606 1.75028 1.21894 0.89074 0.90217 0.97585 0.89326 1.23602 1.01108 0.96314 0.97161 1.21571 1.00223 0.89901 0.96529 0.87191 1.19866 0.93447 0.95496 0.99170 1.21227 0.95712 0.97144 1.00515 1.21428 1.00514 0.93576 0.99387 1.21451 0.93743 1.00090 1.00329 1.21447 0.96223 0.97428 0.99744 1.21327 1.00261 0.93129 0.99795 1.23357 1.03525 0.93109 0.96081 1.41763 1.04124 1.09303 1.56627 0.89794 0.88062 0.88989 0.85272 0.77347 1.23078 1.19477 0.91311 0.91900 0.91431 0.75406 0.91712 0.88616 0.85164 0.85020 0.85063 0.84798 0.84641 0.88212 0.89273 0.72743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.95 9.98 71.24 0.71 1.66 16 2 C 0.10 -0.33 7.13 41.34 0.29 -0.04 16 3 C -0.22 -0.31 4.66 -20.12 -0.09 -0.40 16 4 C -0.04 -0.03 2.86 71.24 0.20 0.17 16 5 O -0.55 -2.96 12.88 -148.98 -1.92 -4.88 16 6 Si 0.74 0.80 30.98 68.60 2.13 2.93 16 7 C -0.08 -0.42 5.82 -19.56 -0.11 -0.54 16 8 C -0.09 -0.65 7.72 71.24 0.55 -0.10 16 9 C -0.07 -0.22 7.06 40.35 0.28 0.07 16 10 C 0.59 3.17 7.79 86.45 0.67 3.84 16 11 O -0.56 -7.68 14.40 -4.33 -0.06 -7.74 16 12 N -0.70 1.49 5.26 -443.56 -2.33 -0.84 16 13 C 0.12 -0.15 4.34 45.61 0.20 0.04 16 14 H 0.09 0.29 7.46 -2.39 -0.02 0.27 16 15 C -0.14 0.24 7.26 31.22 0.23 0.47 16 16 C -0.06 0.29 3.86 -11.01 -0.04 0.25 16 17 H 0.11 -0.83 8.09 -2.38 -0.02 -0.85 16 18 C -0.08 0.06 5.29 -19.87 -0.11 -0.05 16 19 C -0.13 -0.04 8.60 22.27 0.19 0.15 16 20 C -0.13 -0.12 10.05 22.27 0.22 0.10 16 21 C -0.14 -0.12 10.05 22.27 0.22 0.10 16 22 C -0.13 -0.03 10.05 22.27 0.22 0.19 16 23 C -0.13 0.08 9.71 22.27 0.22 0.30 16 24 C -0.12 0.63 7.28 31.12 0.23 0.86 16 25 N -0.52 2.37 5.99 -171.93 -1.03 1.34 16 26 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 27 H 0.10 -1.17 7.26 -2.39 -0.02 -1.19 16 28 H 0.09 -1.25 8.14 -2.39 -0.02 -1.27 16 29 H 0.13 -0.41 6.65 -2.39 -0.02 -0.43 16 30 H 0.38 0.83 6.57 -74.06 -0.49 0.34 16 31 H -0.30 -2.45 7.11 99.48 0.71 -1.75 16 32 H -0.27 -1.45 5.05 99.48 0.50 -0.95 16 33 H 0.07 0.53 7.14 -2.39 -0.02 0.51 16 34 H 0.06 0.26 5.09 -2.39 -0.01 0.25 16 35 H 0.07 0.72 6.49 -2.39 -0.02 0.70 16 36 H 0.41 -3.61 7.83 -92.71 -0.73 -4.34 16 37 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.10 -0.14 6.32 -2.39 -0.02 -0.16 16 39 H 0.13 -0.28 6.68 -2.91 -0.02 -0.30 16 40 H 0.13 -0.27 8.06 -2.91 -0.02 -0.29 16 41 H 0.13 -0.28 8.06 -2.91 -0.02 -0.31 16 42 H 0.13 -0.42 8.06 -2.91 -0.02 -0.45 16 43 H 0.14 -0.63 8.06 -2.91 -0.02 -0.65 16 44 H 0.10 -0.46 7.71 -2.39 -0.02 -0.48 16 45 H 0.09 -0.65 8.14 -2.38 -0.02 -0.67 16 46 H 0.43 -5.10 8.19 -92.71 -0.76 -5.86 16 Total: 0.00 -20.52 367.44 -0.23 -20.75 By element: Atomic # 1 Polarization: -17.54 SS G_CDS: -1.10 Total: -18.64 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 4.09 Total: 7.09 kcal Atomic # 7 Polarization: 3.86 SS G_CDS: -3.36 Total: 0.49 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -1.98 Total: -12.62 kcal Atomic # 14 Polarization: 0.80 SS G_CDS: 2.13 Total: 2.93 kcal Total: -20.52 -0.23 -20.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_12297754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.779 kcal (2) G-P(sol) polarization free energy of solvation -20.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds