Wall clock time and date at job start Mon Mar 8 2021 02:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86302 * 109.46994 * 2 1 4 4 C 1.50699 * 109.47212 * 119.99966 * 2 1 3 5 5 C 1.38237 * 119.99924 * 64.99682 * 4 2 1 6 6 C 1.38234 * 119.99970 * 179.97438 * 5 4 2 7 7 C 1.38237 * 119.99965 * 0.02576 * 6 5 4 8 8 C 1.50699 * 120.00011 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47192 * 90.00136 * 8 7 6 10 10 O 1.21284 * 120.00109 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00137 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99873 * 179.97438 * 11 9 8 13 13 H 1.09002 * 112.85053 * 23.81070 * 12 11 9 14 14 C 1.53781 * 113.61132 * 155.00131 * 12 11 9 15 15 C 1.53785 * 87.08168 * 89.11771 * 14 12 11 16 16 H 1.09002 * 113.61486 * 270.80261 * 15 14 12 17 17 C 1.50698 * 113.61439 * 139.97636 * 15 14 12 18 18 C 1.38224 * 120.00315 * 299.73035 * 17 15 14 19 19 C 1.38239 * 120.00149 * 179.76624 * 18 17 15 20 20 C 1.38240 * 119.99879 * 0.48634 * 19 18 17 21 21 C 1.38243 * 119.99741 * 359.78741 * 20 19 18 22 22 C 1.38231 * 119.99784 * 359.95906 * 21 20 19 23 23 C 1.53782 * 113.61543 * 252.49944 * 12 11 9 24 24 C 1.38236 * 119.99837 * 0.25431 * 7 6 5 25 25 C 1.38231 * 120.00206 * 359.49134 * 24 7 6 26 26 H 0.96697 * 114.00047 * 60.00552 * 1 2 3 27 27 H 1.08994 * 109.47158 * 239.99931 * 2 1 3 28 28 H 1.48501 * 109.99787 * 298.67941 * 3 2 1 29 29 H 1.48499 * 109.99979 * 60.00085 * 3 2 1 30 30 H 1.08002 * 120.00057 * 0.02562 * 5 4 2 31 31 H 1.08002 * 120.00380 * 180.02562 * 6 5 4 32 32 H 1.09004 * 109.47103 * 330.00201 * 8 7 6 33 33 H 1.09000 * 109.47247 * 210.00079 * 8 7 6 34 34 H 0.96995 * 120.00018 * 0.27749 * 11 9 8 35 35 H 1.09001 * 113.61611 * 203.66335 * 14 12 11 36 36 H 1.08999 * 113.61739 * 334.57290 * 14 12 11 37 37 H 1.08000 * 120.00293 * 0.02562 * 18 17 15 38 38 H 1.07999 * 119.99995 * 180.25215 * 19 18 17 39 39 H 1.07990 * 120.00051 * 179.76924 * 20 19 18 40 40 H 1.07996 * 119.99891 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.99693 * 180.02562 * 22 21 20 42 42 H 1.09002 * 113.61503 * 25.43252 * 23 12 11 43 43 H 1.08994 * 113.61294 * 156.33804 * 23 12 11 44 44 H 1.08002 * 119.99598 * 179.72070 * 24 7 6 45 45 H 1.07997 * 120.00159 * 180.25381 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6847 -2.0602 1.3984 6 6 2.1459 -2.7119 2.5268 7 6 2.8534 -2.0138 3.4876 8 6 3.3558 -2.7242 4.7180 9 6 4.7372 -3.2664 4.4562 10 8 5.2620 -3.0935 3.3765 11 7 5.3896 -3.9435 5.4218 12 6 6.7324 -4.4711 5.1670 13 1 7.2547 -3.9346 4.3749 14 6 7.5724 -4.6589 6.4414 15 6 6.9759 -6.0735 6.5316 16 1 6.0441 -6.1193 7.0954 17 6 7.9705 -7.1220 6.9587 18 6 9.0987 -7.3561 6.1953 19 6 10.0135 -8.3146 6.5897 20 6 9.7950 -9.0458 7.7423 21 6 8.6638 -8.8155 8.5028 22 6 7.7517 -7.8535 8.1112 23 6 6.7737 -6.0003 5.0089 24 6 3.0950 -0.6628 3.3224 25 6 2.6384 -0.0122 2.1915 26 1 -0.3933 0.4416 -0.7651 27 1 1.7923 -0.5138 -0.8899 28 1 1.5878 2.4585 -1.2243 29 1 1.5615 2.4679 1.2085 30 1 1.1323 -2.6057 0.6476 31 1 1.9536 -3.7666 2.6579 32 1 2.6832 -3.5463 4.9630 33 1 3.3925 -2.0238 5.5524 34 1 4.9683 -4.0853 6.2839 35 1 8.6474 -4.6491 6.2611 36 1 7.2737 -4.0060 7.2614 37 1 9.2677 -6.7874 5.2928 38 1 10.8971 -8.4947 5.9953 39 1 10.5077 -9.7971 8.0484 40 1 8.4928 -9.3870 9.4031 41 1 6.8681 -7.6733 8.7056 42 1 5.8302 -6.4301 4.6726 43 1 7.6302 -6.3570 4.4371 44 1 3.6439 -0.1164 4.0752 45 1 2.8307 1.0424 2.0605 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705150_12335836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:00:43 Heat of formation + Delta-G solvation = 14.172887 kcal Electronic energy + Delta-G solvation = -25540.943461 eV Core-core repulsion = 21876.461051 eV Total energy + Delta-G solvation = -3664.482410 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.151 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.59455 -40.76879 -39.94083 -38.67264 -37.74040 -34.57213 -34.05229 -31.94420 -31.87226 -31.59401 -29.72387 -26.67849 -26.38191 -25.38907 -23.81716 -23.55094 -22.60742 -22.13078 -21.31568 -20.04976 -18.58613 -18.37772 -17.73072 -17.58118 -16.99153 -16.86784 -16.33989 -16.14908 -15.97320 -15.90482 -15.26346 -15.08524 -14.99047 -14.59123 -14.50144 -14.36386 -14.21531 -14.03027 -13.97790 -13.56666 -13.46295 -13.17298 -13.02280 -12.82426 -12.70421 -12.24790 -12.13773 -11.95057 -11.73050 -11.71192 -11.64793 -11.13906 -10.95457 -10.51337 -10.04191 -9.87099 -9.79945 -9.60729 -9.53007 -4.94570 0.23801 0.44931 0.46031 0.51694 1.27245 1.55917 1.65478 1.89375 2.15131 2.74797 2.85328 3.39727 3.51083 3.65228 3.72751 3.75081 3.85553 3.90993 3.96944 4.04422 4.07126 4.08329 4.16948 4.27225 4.30737 4.33043 4.46001 4.49129 4.60486 4.62541 4.65513 4.72062 4.72522 4.79089 4.88764 5.00381 5.03104 5.03393 5.09062 5.15205 5.19825 5.21395 5.38116 5.54540 5.58797 5.58887 5.62184 5.66165 5.77655 6.01700 6.14499 6.56046 6.58662 7.30396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.087 4.087 3 Si 0.760 3.240 4 C -0.091 4.091 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.072 4.072 8 C -0.097 4.097 9 C 0.516 3.484 10 O -0.576 6.576 11 N -0.702 5.702 12 C 0.118 3.882 13 H 0.082 0.918 14 C -0.125 4.125 15 C -0.065 4.065 16 H 0.112 0.888 17 C -0.079 4.079 18 C -0.129 4.129 19 C -0.131 4.131 20 C -0.139 4.139 21 C -0.131 4.131 22 C -0.127 4.127 23 C -0.144 4.144 24 C -0.110 4.110 25 C -0.127 4.127 26 H 0.394 0.606 27 H 0.089 0.911 28 H -0.283 1.283 29 H -0.295 1.295 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.417 0.583 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.143 0.857 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.225 -1.022 4.113 4.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.196 4.196 3 Si 0.665 3.335 4 C -0.091 4.091 5 C -0.127 4.127 6 C -0.134 4.134 7 C -0.072 4.072 8 C -0.137 4.137 9 C 0.304 3.696 10 O -0.454 6.454 11 N -0.354 5.354 12 C 0.012 3.988 13 H 0.100 0.900 14 C -0.163 4.163 15 C -0.083 4.083 16 H 0.130 0.870 17 C -0.079 4.079 18 C -0.146 4.146 19 C -0.149 4.149 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.182 4.182 24 C -0.128 4.128 25 C -0.144 4.144 26 H 0.244 0.756 27 H 0.107 0.893 28 H -0.210 1.210 29 H -0.222 1.222 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.255 0.745 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.085 0.915 43 H 0.109 0.891 44 H 0.161 0.839 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.483 -0.378 3.893 4.183 hybrid contribution -1.230 -0.439 -0.392 1.364 sum 0.252 -0.817 3.501 3.604 Atomic orbital electron populations 1.86541 1.18503 1.80731 1.50957 1.25024 0.84046 1.12022 0.98507 0.94014 0.90643 0.72220 0.76594 1.19487 0.99243 0.94497 0.95883 1.21116 0.99195 0.94211 0.98188 1.21249 0.98018 1.00341 0.93792 1.19592 0.97512 0.93919 0.96220 1.20749 0.92761 1.02783 0.97359 1.20977 0.87961 0.77060 0.83597 1.90744 1.69443 1.59160 1.26085 1.45583 1.16855 1.55838 1.17141 1.21771 0.83781 0.94306 0.98935 0.89958 1.23348 1.00241 0.95578 0.97097 1.21590 0.97638 0.92819 0.96244 0.86998 1.19899 0.95743 0.97215 0.95072 1.21226 0.94473 0.98686 1.00255 1.21424 0.99856 0.96438 0.97218 1.21442 0.98283 1.00306 0.95646 1.21447 0.94664 0.98401 1.00367 1.21336 1.00101 0.96245 0.96849 1.23541 1.02778 0.95907 0.96001 1.21216 0.99240 0.94411 0.97931 1.21151 0.99103 1.00031 0.94164 0.75593 0.89320 1.21012 1.22213 0.85728 0.84801 0.85296 0.84914 0.74519 0.88684 0.89286 0.85234 0.85055 0.85099 0.84845 0.84640 0.91458 0.89062 0.83903 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.78 12.81 -148.98 -1.91 -4.69 16 2 C -0.09 -0.27 2.79 71.24 0.20 -0.07 16 3 Si 0.76 0.64 29.85 68.60 2.05 2.69 16 4 C -0.09 -0.58 5.38 -19.87 -0.11 -0.69 16 5 C -0.11 -0.72 9.69 22.27 0.22 -0.50 16 6 C -0.12 -0.53 9.70 22.27 0.22 -0.31 16 7 C -0.07 -0.20 4.37 -19.87 -0.09 -0.28 16 8 C -0.10 0.43 5.83 29.10 0.17 0.60 16 9 C 0.52 0.58 7.82 87.66 0.69 1.27 16 10 O -0.58 -6.56 15.63 -3.04 -0.05 -6.61 16 11 N -0.70 3.02 5.26 -440.02 -2.32 0.71 16 12 C 0.12 -0.22 4.32 45.52 0.20 -0.03 16 13 H 0.08 0.27 7.46 -2.39 -0.02 0.25 16 14 C -0.12 0.62 7.29 31.12 0.23 0.85 16 15 C -0.06 0.28 3.86 -11.01 -0.04 0.24 16 16 H 0.11 -0.82 8.09 -2.39 -0.02 -0.84 16 17 C -0.08 0.03 5.29 -19.87 -0.11 -0.07 16 18 C -0.13 -0.08 8.62 22.27 0.19 0.11 16 19 C -0.13 -0.16 10.05 22.27 0.22 0.06 16 20 C -0.14 -0.17 10.05 22.27 0.22 0.06 16 21 C -0.13 -0.08 10.05 22.27 0.22 0.14 16 22 C -0.13 0.03 9.71 22.27 0.22 0.24 16 23 C -0.14 0.29 7.25 31.12 0.23 0.51 16 24 C -0.11 -0.36 9.70 22.27 0.22 -0.15 16 25 C -0.13 -0.61 8.67 22.27 0.19 -0.42 16 26 H 0.39 -1.32 8.74 -74.06 -0.65 -1.97 16 27 H 0.09 -0.01 7.96 -2.39 -0.02 -0.03 16 28 H -0.28 -1.20 7.11 99.48 0.71 -0.49 16 29 H -0.29 -2.14 7.05 99.48 0.70 -1.44 16 30 H 0.12 0.63 8.06 -2.91 -0.02 0.61 16 31 H 0.13 0.12 8.06 -2.91 -0.02 0.10 16 32 H 0.13 -1.18 8.09 -2.38 -0.02 -1.20 16 33 H 0.13 -1.30 8.08 -2.39 -0.02 -1.32 16 34 H 0.42 -4.51 8.70 -92.71 -0.81 -5.32 16 35 H 0.09 -0.38 7.73 -2.39 -0.02 -0.40 16 36 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 37 H 0.13 -0.22 6.64 -2.91 -0.02 -0.24 16 38 H 0.13 -0.23 8.06 -2.91 -0.02 -0.26 16 39 H 0.13 -0.24 8.06 -2.92 -0.02 -0.27 16 40 H 0.13 -0.37 8.06 -2.91 -0.02 -0.39 16 41 H 0.14 -0.56 8.06 -2.91 -0.02 -0.58 16 42 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 43 H 0.09 -0.12 6.30 -2.39 -0.02 -0.14 16 44 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 45 H 0.14 0.20 4.87 -2.91 -0.01 0.19 16 Total: 0.00 -21.66 373.52 0.65 -21.01 By element: Atomic # 1 Polarization: -14.27 SS G_CDS: -0.41 Total: -14.68 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 3.28 Total: 1.57 kcal Atomic # 7 Polarization: 3.02 SS G_CDS: -2.32 Total: 0.71 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -1.96 Total: -11.30 kcal Atomic # 14 Polarization: 0.64 SS G_CDS: 2.05 Total: 2.69 kcal Total: -21.66 0.65 -21.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_12335836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.186 kcal (2) G-P(sol) polarization free energy of solvation -21.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds