Wall clock time and date at job start Mon Mar 8 2021 02:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.46974 * 2 1 4 4 C 1.50701 * 109.47417 * 120.00123 * 2 1 3 5 5 C 1.37941 * 119.91944 * 64.72054 * 4 2 1 6 6 C 1.39600 * 119.87077 * 179.74989 * 5 4 2 7 7 C 1.47846 * 120.14268 * 180.29626 * 6 5 4 8 8 O 1.21553 * 119.99514 * 0.23430 * 7 6 5 9 9 N 1.34777 * 120.00339 * 180.23375 * 7 6 5 10 10 C 1.46501 * 120.00087 * 180.02562 * 9 7 6 11 11 H 1.09002 * 112.84731 * 23.79540 * 10 9 7 12 12 C 1.53774 * 113.61478 * 155.00015 * 10 9 7 13 13 C 1.53777 * 87.08478 * 89.11187 * 12 10 9 14 14 H 1.09002 * 113.61240 * 270.88470 * 13 12 10 15 15 C 1.50701 * 113.61787 * 139.97844 * 13 12 10 16 16 C 1.38231 * 119.99929 * 299.73240 * 15 13 12 17 17 C 1.38240 * 120.00145 * 179.78348 * 16 15 13 18 18 C 1.38233 * 119.99474 * 0.44064 * 17 16 15 19 19 C 1.38235 * 120.00616 * 359.81303 * 18 17 16 20 20 C 1.38234 * 119.99985 * 120.00087 * 15 13 12 21 21 C 1.53784 * 113.61108 * 252.49670 * 10 9 7 22 22 C 1.39550 * 119.72056 * 0.52957 * 6 5 4 23 23 C 1.38076 * 119.83874 * 359.74900 * 22 6 5 24 24 Br 1.89098 * 119.93464 * 180.02562 * 23 22 6 25 25 C 1.38367 * 119.92112 * 245.00350 * 4 2 1 26 26 H 0.96699 * 114.00604 * 59.99761 * 1 2 3 27 27 H 1.09002 * 109.46984 * 240.00143 * 2 1 3 28 28 H 1.48501 * 110.00188 * 298.68297 * 3 2 1 29 29 H 1.48498 * 110.00005 * 60.00258 * 3 2 1 30 30 H 1.08000 * 120.06632 * 0.02860 * 5 4 2 31 31 H 0.97007 * 119.99661 * 359.97438 * 9 7 6 32 32 H 1.09000 * 113.61596 * 203.66420 * 12 10 9 33 33 H 1.08999 * 113.61487 * 334.47459 * 12 10 9 34 34 H 1.08003 * 120.00148 * 359.97438 * 16 15 13 35 35 H 1.07997 * 120.00050 * 180.27215 * 17 16 15 36 36 H 1.08002 * 119.99755 * 179.83166 * 18 17 16 37 37 H 1.07992 * 120.00431 * 180.02562 * 19 18 17 38 38 H 1.07999 * 119.99897 * 359.97438 * 20 15 13 39 39 H 1.09002 * 113.61205 * 25.42609 * 21 10 9 40 40 H 1.08999 * 113.61419 * 156.33285 * 21 10 9 41 41 H 1.08000 * 120.07841 * 179.72513 * 22 6 5 42 42 H 1.07996 * 119.86001 * 359.95268 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6794 -2.0561 1.3990 6 6 2.1498 -2.7143 2.5367 7 6 1.8888 -4.1580 2.7203 8 8 1.2671 -4.7751 1.8776 9 7 2.3402 -4.7896 3.8220 10 6 2.0821 -6.2202 4.0037 11 1 1.9049 -6.7412 3.0627 12 6 3.1061 -6.9205 4.9123 13 6 2.1932 -6.5513 6.0934 14 1 2.4157 -5.5774 6.5295 15 6 2.0708 -7.6423 7.1258 16 6 1.5609 -8.8768 6.7698 17 6 1.4528 -9.8790 7.7158 18 6 1.8461 -9.6436 9.0199 19 6 2.3511 -8.4074 9.3773 20 6 2.4632 -7.4067 8.4302 21 6 1.0320 -6.5242 5.0854 22 6 2.8632 -2.0029 3.5023 23 6 3.1037 -0.6550 3.3244 24 35 4.0707 0.3115 4.6307 25 6 2.6392 -0.0100 2.1911 26 1 -0.3934 0.4417 -0.7650 27 1 1.7923 -0.5138 -0.8900 28 1 1.5878 2.4586 -1.2242 29 1 1.5614 2.4679 1.2085 30 1 1.1232 -2.6004 0.6502 31 1 2.8366 -4.2971 4.4943 32 1 3.1824 -7.9938 4.7382 33 1 4.0771 -6.4259 4.9380 34 1 1.2498 -9.0594 5.7518 35 1 1.0585 -10.8449 7.4366 36 1 1.7591 -10.4257 9.7597 37 1 2.6588 -8.2237 10.3960 38 1 2.8579 -6.4409 8.7092 39 1 0.3282 -5.7087 5.2520 40 1 0.5412 -7.4891 4.9585 41 1 3.2259 -2.5054 4.3868 42 1 2.8305 1.0442 2.0560 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705150_12335870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:01:14 Heat of formation + Delta-G solvation = 26.128717 kcal Electronic energy + Delta-G solvation = -26006.632617 eV Core-core repulsion = 22158.388267 eV Total energy + Delta-G solvation = -3848.244350 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.046 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.87289 -40.95670 -39.89141 -38.68344 -37.80735 -34.91948 -33.68392 -33.08566 -31.83771 -31.45132 -30.48318 -27.08910 -26.72179 -26.55058 -25.05694 -23.50240 -22.71766 -22.43276 -21.63635 -20.17519 -18.95391 -18.64737 -18.08265 -17.58298 -17.39582 -16.69382 -16.31836 -16.24222 -16.08114 -15.97436 -15.42687 -15.19915 -15.03368 -14.84382 -14.51819 -14.37618 -14.19684 -14.05278 -14.02165 -13.66833 -13.47302 -13.12127 -12.85040 -12.74279 -12.41256 -12.15435 -12.01355 -11.86321 -11.75741 -11.69626 -11.49721 -11.19342 -11.17863 -10.61186 -10.37795 -10.11770 -9.91168 -9.80269 -9.54127 -4.98466 -0.53213 -0.16699 0.41381 0.44367 0.51432 1.19563 1.48699 1.55362 1.86880 1.92539 2.42627 2.84678 3.14502 3.34701 3.45077 3.58211 3.68480 3.71310 3.78457 3.86461 3.93796 3.97580 4.06590 4.13998 4.16571 4.25178 4.28079 4.31709 4.48905 4.57469 4.63255 4.67932 4.74661 4.76704 4.82190 4.91822 4.95773 5.00258 5.07675 5.12720 5.14464 5.19538 5.35282 5.49084 5.60273 5.65820 5.75527 6.14016 6.33679 6.52566 7.01043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.088 4.088 3 Si 0.758 3.242 4 C -0.078 4.078 5 C -0.029 4.029 6 C -0.136 4.136 7 C 0.564 3.436 8 O -0.570 6.570 9 N -0.693 5.693 10 C 0.115 3.885 11 H 0.090 0.910 12 C -0.123 4.123 13 C -0.066 4.066 14 H 0.110 0.890 15 C -0.079 4.079 16 C -0.128 4.128 17 C -0.131 4.131 18 C -0.138 4.138 19 C -0.131 4.131 20 C -0.127 4.127 21 C -0.144 4.144 22 C -0.044 4.044 23 C -0.099 4.099 24 Br -0.027 7.027 25 C -0.064 4.064 26 H 0.398 0.602 27 H 0.102 0.898 28 H -0.279 1.279 29 H -0.290 1.290 30 H 0.133 0.867 31 H 0.415 0.585 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.164 0.836 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.701 1.202 1.106 4.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.196 4.196 3 Si 0.662 3.338 4 C -0.079 4.079 5 C -0.049 4.049 6 C -0.140 4.140 7 C 0.352 3.648 8 O -0.450 6.450 9 N -0.344 5.344 10 C 0.010 3.990 11 H 0.108 0.892 12 C -0.161 4.161 13 C -0.084 4.084 14 H 0.129 0.871 15 C -0.079 4.079 16 C -0.146 4.146 17 C -0.149 4.149 18 C -0.156 4.156 19 C -0.149 4.149 20 C -0.145 4.145 21 C -0.182 4.182 22 C -0.064 4.064 23 C -0.179 4.179 24 Br 0.059 6.941 25 C -0.083 4.083 26 H 0.250 0.750 27 H 0.120 0.880 28 H -0.206 1.206 29 H -0.217 1.217 30 H 0.151 0.849 31 H 0.253 0.747 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.182 0.818 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.522 1.628 1.563 5.054 hybrid contribution -1.467 -0.285 -0.464 1.565 sum 3.055 1.343 1.099 3.514 Atomic orbital electron populations 1.86543 1.18125 1.80822 1.51272 1.25033 0.84464 1.12108 0.97979 0.94237 0.90243 0.71945 0.77358 1.19347 0.98934 0.93367 0.96278 1.21277 0.93894 0.93758 0.95953 1.19850 1.03663 0.93153 0.97339 1.18291 0.78277 0.86713 0.81510 1.90795 1.41912 1.68016 1.44302 1.45470 1.56679 1.10037 1.22240 1.21901 0.97537 0.80651 0.98925 0.89179 1.23363 0.97865 1.01934 0.92922 1.21599 0.96937 0.97491 0.92419 0.87144 1.19861 0.98538 0.94976 0.94509 1.21232 0.99973 0.93160 1.00192 1.21423 0.99970 0.99852 0.93649 1.21442 0.99442 0.97829 0.96922 1.21441 0.99466 0.93637 1.00325 1.21333 1.00337 1.00001 0.92859 1.23566 0.96655 1.02946 0.95053 1.21464 0.94412 0.92136 0.98393 1.21699 1.04244 0.95307 0.96619 1.96847 1.72064 1.73612 1.51564 1.21365 0.94993 1.00572 0.91362 0.75048 0.87985 1.20571 1.21697 0.84896 0.74696 0.88079 0.89130 0.85075 0.85006 0.85098 0.84872 0.84705 0.91548 0.88475 0.81844 0.82982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.02 12.80 -148.98 -1.91 -2.93 16 2 C -0.09 0.12 2.79 71.24 0.20 0.32 16 3 Si 0.76 -2.52 29.84 68.60 2.05 -0.47 16 4 C -0.08 -0.11 5.38 -19.90 -0.11 -0.21 16 5 C -0.03 -0.12 9.22 22.53 0.21 0.09 16 6 C -0.14 -0.32 5.87 -20.09 -0.12 -0.44 16 7 C 0.56 2.85 7.77 86.79 0.67 3.52 16 8 O -0.57 -7.71 15.95 -3.88 -0.06 -7.77 16 9 N -0.69 1.11 5.21 -442.90 -2.31 -1.20 16 10 C 0.12 -0.13 4.32 45.52 0.20 0.07 16 11 H 0.09 0.27 7.46 -2.39 -0.02 0.26 16 12 C -0.12 0.59 7.29 31.12 0.23 0.82 16 13 C -0.07 0.26 3.86 -11.01 -0.04 0.22 16 14 H 0.11 -0.73 8.10 -2.39 -0.02 -0.75 16 15 C -0.08 0.02 5.29 -19.87 -0.11 -0.09 16 16 C -0.13 -0.07 8.62 22.27 0.19 0.12 16 17 C -0.13 -0.16 10.05 22.27 0.22 0.07 16 18 C -0.14 -0.18 10.05 22.27 0.22 0.04 16 19 C -0.13 -0.11 10.05 22.27 0.22 0.12 16 20 C -0.13 -0.01 9.71 22.27 0.22 0.21 16 21 C -0.14 0.21 7.25 31.12 0.23 0.44 16 22 C -0.04 0.10 9.28 22.55 0.21 0.30 16 23 C -0.10 0.10 6.22 22.27 0.14 0.24 16 24 Br -0.03 0.05 33.69 -20.37 -0.69 -0.64 16 25 C -0.06 0.02 8.40 22.34 0.19 0.21 16 26 H 0.40 -2.52 8.74 -74.06 -0.65 -3.16 16 27 H 0.10 -0.54 7.96 -2.39 -0.02 -0.56 16 28 H -0.28 -0.19 7.11 99.48 0.71 0.52 16 29 H -0.29 -0.93 7.05 99.48 0.70 -0.23 16 30 H 0.13 0.86 7.65 -2.91 -0.02 0.84 16 31 H 0.41 -3.15 6.74 -92.70 -0.62 -3.78 16 32 H 0.10 -0.46 7.73 -2.39 -0.02 -0.48 16 33 H 0.09 -0.63 8.14 -2.39 -0.02 -0.64 16 34 H 0.13 -0.28 6.64 -2.91 -0.02 -0.29 16 35 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 36 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 37 H 0.13 -0.33 8.06 -2.91 -0.02 -0.35 16 38 H 0.14 -0.49 8.06 -2.91 -0.02 -0.52 16 39 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.10 -0.15 6.30 -2.39 -0.02 -0.16 16 41 H 0.16 -1.35 6.40 -2.91 -0.02 -1.36 16 42 H 0.15 -0.47 4.85 -2.91 -0.01 -0.48 16 Total: 0.00 -18.52 370.16 -0.11 -18.63 By element: Atomic # 1 Polarization: -11.50 SS G_CDS: -0.16 Total: -11.66 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 2.97 Total: 6.04 kcal Atomic # 7 Polarization: 1.11 SS G_CDS: -2.31 Total: -1.20 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -1.97 Total: -10.70 kcal Atomic # 14 Polarization: -2.52 SS G_CDS: 2.05 Total: -0.47 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -0.69 Total: -0.64 kcal Total: -18.52 -0.11 -18.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_12335870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.754 kcal (2) G-P(sol) polarization free energy of solvation -18.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds