Wall clock time and date at job start Mon Mar 8 2021 02:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86303 * 109.47438 * 2 1 4 4 C 1.50709 * 109.46599 * 119.99786 * 2 1 3 5 5 C 1.35081 * 126.07483 * 254.68981 * 4 2 1 6 6 N 1.35032 * 107.98122 * 180.26835 * 5 4 2 7 7 C 1.46497 * 125.93376 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47549 * 124.96917 * 7 6 5 9 9 O 1.21279 * 119.99804 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99989 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99911 * 180.02562 * 10 8 7 12 12 H 1.09000 * 112.85304 * 23.80239 * 11 10 8 13 13 C 1.53776 * 113.61561 * 155.00598 * 11 10 8 14 14 C 1.53774 * 87.08602 * 89.11469 * 13 11 10 15 15 H 1.09005 * 113.61689 * 270.88444 * 14 13 11 16 16 C 1.50702 * 113.61728 * 140.06646 * 14 13 11 17 17 C 1.38230 * 119.99796 * 299.72958 * 16 14 13 18 18 C 1.38238 * 119.99740 * 179.76520 * 17 16 14 19 19 C 1.38233 * 119.99982 * 0.50403 * 18 17 16 20 20 C 1.38232 * 119.99974 * 359.74799 * 19 18 17 21 21 C 1.38233 * 120.00064 * 119.99881 * 16 14 13 22 22 C 1.53778 * 87.08017 * 25.43127 * 14 13 11 23 23 N 1.40078 * 108.13830 * 359.97438 * 6 5 4 24 24 C 1.31617 * 108.10578 * 0.02562 * 23 6 5 25 25 C 1.48422 * 126.03846 * 180.02562 * 24 23 6 26 26 C 1.39323 * 120.12320 * 144.72782 * 25 24 23 27 27 C 1.38020 * 119.87791 * 179.72351 * 26 25 24 28 28 C 1.38315 * 120.12073 * 0.55169 * 27 26 25 29 29 C 1.38317 * 120.24105 * 359.71589 * 28 27 26 30 30 C 1.38027 * 120.12053 * 0.02562 * 29 28 27 31 31 H 0.96700 * 114.00441 * 300.00894 * 1 2 3 32 32 H 1.09000 * 109.47496 * 239.99623 * 2 1 3 33 33 H 1.48496 * 109.99978 * 178.67458 * 3 2 1 34 34 H 1.48499 * 109.99749 * 299.99820 * 3 2 1 35 35 H 1.08004 * 126.01196 * 0.24088 * 5 4 2 36 36 H 1.09007 * 109.47157 * 244.96832 * 7 6 5 37 37 H 1.08998 * 109.47173 * 4.96187 * 7 6 5 38 38 H 0.96996 * 120.00125 * 0.02562 * 10 8 7 39 39 H 1.09007 * 113.61666 * 203.66598 * 13 11 10 40 40 H 1.09002 * 113.61598 * 334.56536 * 13 11 10 41 41 H 1.07997 * 120.00283 * 359.97438 * 17 16 14 42 42 H 1.08007 * 120.00027 * 180.22454 * 18 17 16 43 43 H 1.07999 * 119.99912 * 179.72378 * 19 18 17 44 44 H 1.07999 * 119.99887 * 179.97438 * 20 19 18 45 45 H 1.07999 * 120.00099 * 0.02562 * 21 16 14 46 46 H 1.08997 * 113.61481 * 220.01819 * 22 14 13 47 47 H 1.09007 * 113.61039 * 89.11830 * 22 14 13 48 48 H 1.08001 * 120.05636 * 359.97438 * 26 25 24 49 49 H 1.08007 * 119.93864 * 180.29799 * 27 26 25 50 50 H 1.07999 * 119.87793 * 179.70600 * 28 27 26 51 51 H 1.08004 * 119.94100 * 180.02562 * 29 28 27 52 52 H 1.07997 * 120.05887 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.4681 -0.1254 2.3234 6 7 2.7969 -1.0996 3.1987 7 6 3.4076 -0.9019 4.5155 8 6 2.5577 -1.5654 5.5683 9 8 1.5420 -2.1466 5.2499 10 7 2.9268 -1.5138 6.8635 11 6 2.1008 -2.1593 7.8869 12 1 1.4831 -2.9634 7.4870 13 6 2.8826 -2.5533 9.1511 14 6 2.5556 -1.1526 9.6948 15 1 3.2945 -0.3970 9.4277 16 6 2.2096 -1.1398 11.1615 17 6 1.1267 -1.8647 11.6225 18 6 0.8123 -1.8569 12.9686 19 6 1.5746 -1.1159 13.8521 20 6 2.6544 -0.3868 13.3904 21 6 2.9719 -0.3988 12.0451 22 6 1.3269 -1.1665 8.7702 23 7 2.4515 -2.3320 2.6295 24 6 1.9295 -2.1027 1.4432 25 6 1.4270 -3.1299 0.4970 26 6 0.3178 -2.8614 -0.3021 27 6 -0.1417 -3.8182 -1.1844 28 6 0.4899 -5.0459 -1.2679 29 6 1.5882 -5.3197 -0.4729 30 6 2.0593 -4.3683 0.4090 31 1 -0.3934 0.4418 0.7649 32 1 1.7924 -0.5139 -0.8899 33 1 3.5346 1.7702 0.0323 34 1 1.5616 2.4678 -1.2085 35 1 2.6099 0.9351 2.4709 36 1 4.4049 -1.3419 4.5233 37 1 3.4798 0.1651 4.7261 38 1 3.7394 -1.0492 7.1181 39 1 2.4185 -3.3609 9.7175 40 1 3.9458 -2.7158 8.9742 41 1 0.5283 -2.4398 10.9315 42 1 -0.0317 -2.4262 13.3294 43 1 1.3262 -1.1062 14.9032 44 1 3.2497 0.1924 14.0806 45 1 3.8152 0.1714 11.6842 46 1 1.1342 -0.2093 8.2857 47 1 0.4375 -1.5948 9.2325 48 1 -0.1790 -1.9049 -0.2342 49 1 -0.9986 -3.6093 -1.8079 50 1 0.1241 -5.7934 -1.9563 51 1 2.0779 -6.2798 -0.5424 52 1 2.9167 -4.5833 1.0296 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705150_12622748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:01:38 Heat of formation + Delta-G solvation = 103.772206 kcal Electronic energy + Delta-G solvation = -34426.931666 eV Core-core repulsion = 29939.729093 eV Total energy + Delta-G solvation = -4487.202573 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.173 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -42.48532 -41.52695 -40.29539 -39.75911 -38.70973 -37.71809 -34.86438 -34.51322 -32.35378 -31.98039 -31.82105 -31.59200 -31.30069 -28.77458 -26.71364 -26.29036 -25.73061 -24.24592 -23.54057 -23.47060 -22.49677 -22.00902 -21.44126 -20.95372 -20.11456 -18.70365 -18.53816 -17.87929 -17.72549 -17.23960 -16.78238 -16.73599 -16.37097 -16.16207 -16.02744 -15.97486 -15.83356 -15.42152 -15.37204 -15.02801 -14.80207 -14.58311 -14.40030 -14.30184 -14.21663 -14.12854 -14.01991 -13.90781 -13.68366 -13.50936 -13.32809 -13.03061 -12.73898 -12.45652 -12.38398 -12.15799 -12.13211 -11.89041 -11.73691 -11.67976 -11.54040 -11.28313 -11.17704 -10.66299 -10.24269 -10.13606 -9.88680 -9.80690 -9.74237 -9.54253 -9.28422 -4.96433 0.06364 0.44026 0.46302 0.51064 0.84561 1.30882 1.44285 1.48245 1.66584 1.79975 2.06426 2.07807 2.84314 2.89459 3.36934 3.47262 3.56650 3.60853 3.68127 3.72912 3.75985 3.94327 3.98479 4.02073 4.06675 4.11709 4.14748 4.16088 4.19572 4.25536 4.32394 4.33951 4.44283 4.52192 4.57885 4.62373 4.64024 4.68564 4.75827 4.80420 4.83114 4.84911 4.97672 4.99759 5.00378 5.13902 5.15450 5.17252 5.19467 5.31351 5.52218 5.55879 5.60081 5.61401 5.64014 5.65608 5.75955 5.94949 6.05139 6.13830 6.47243 6.61889 6.87577 7.17972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.042 4.042 3 Si 0.804 3.196 4 C -0.270 4.270 5 C 0.080 3.920 6 N -0.360 5.360 7 C 0.110 3.890 8 C 0.498 3.502 9 O -0.565 6.565 10 N -0.694 5.694 11 C 0.119 3.881 12 H 0.073 0.927 13 C -0.126 4.126 14 C -0.061 4.061 15 H 0.119 0.881 16 C -0.080 4.080 17 C -0.130 4.130 18 C -0.133 4.133 19 C -0.139 4.139 20 C -0.131 4.131 21 C -0.125 4.125 22 C -0.141 4.141 23 N -0.297 5.297 24 C 0.106 3.894 25 C -0.039 4.039 26 C -0.112 4.112 27 C -0.132 4.132 28 C -0.118 4.118 29 C -0.132 4.132 30 C -0.112 4.112 31 H 0.393 0.607 32 H 0.090 0.910 33 H -0.280 1.280 34 H -0.302 1.302 35 H 0.230 0.770 36 H 0.140 0.860 37 H 0.185 0.815 38 H 0.422 0.578 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.139 0.861 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.158 0.842 49 H 0.142 0.858 50 H 0.145 0.855 51 H 0.141 0.859 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.548 6.977 5.211 9.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.151 4.151 3 Si 0.708 3.292 4 C -0.281 4.281 5 C -0.065 4.065 6 N -0.141 5.141 7 C -0.014 4.014 8 C 0.284 3.716 9 O -0.442 6.442 10 N -0.348 5.348 11 C 0.012 3.988 12 H 0.092 0.908 13 C -0.164 4.164 14 C -0.079 4.079 15 H 0.137 0.863 16 C -0.080 4.080 17 C -0.148 4.148 18 C -0.151 4.151 19 C -0.157 4.157 20 C -0.148 4.148 21 C -0.143 4.143 22 C -0.179 4.179 23 N -0.118 5.118 24 C -0.058 4.058 25 C -0.041 4.041 26 C -0.131 4.131 27 C -0.149 4.149 28 C -0.136 4.136 29 C -0.150 4.150 30 C -0.132 4.132 31 H 0.243 0.757 32 H 0.108 0.892 33 H -0.207 1.207 34 H -0.230 1.230 35 H 0.246 0.754 36 H 0.158 0.842 37 H 0.202 0.798 38 H 0.260 0.740 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.157 0.843 46 H 0.092 0.908 47 H 0.106 0.894 48 H 0.175 0.825 49 H 0.160 0.840 50 H 0.163 0.837 51 H 0.159 0.841 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.812 5.988 5.074 9.206 hybrid contribution -0.033 -0.461 -0.398 0.609 sum 4.779 5.527 4.676 8.675 Atomic orbital electron populations 1.86326 1.17947 1.81519 1.50460 1.24623 0.84617 1.11010 0.94861 0.94006 0.77122 0.72952 0.85096 1.20657 1.14508 0.92291 1.00694 1.22907 0.97792 0.96897 0.88930 1.48151 1.47858 1.03645 1.14484 1.22013 0.96641 1.06654 0.76045 1.21115 0.86007 0.80281 0.84218 1.90833 1.27698 1.43922 1.81707 1.45409 1.28089 1.56398 1.04867 1.21748 0.93703 0.95740 0.87561 0.90833 1.23356 1.01759 0.97002 0.94328 1.21590 0.98493 0.98458 0.89380 0.86323 1.19893 0.95373 0.97011 0.95677 1.21217 0.97759 0.99983 0.95813 1.21410 1.00269 0.99579 0.93812 1.21438 0.96092 0.97629 1.00506 1.21458 0.97599 0.99419 0.96373 1.21345 1.00212 0.99432 0.93271 1.23514 0.97569 1.00177 0.96650 1.77689 1.20550 1.04463 1.09113 1.20864 0.98820 0.93805 0.92358 1.18090 0.97097 0.92569 0.96369 1.22077 0.95022 1.01607 0.94409 1.21441 1.00816 0.93673 0.99012 1.21594 0.95424 0.97510 0.99071 1.21345 0.97530 0.99760 0.96371 1.21316 1.00084 0.93040 0.98738 0.75656 0.89240 1.20670 1.23030 0.75377 0.84218 0.79825 0.74005 0.89039 0.89177 0.85528 0.85265 0.85163 0.84751 0.84300 0.90800 0.89398 0.82512 0.83977 0.83680 0.84107 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.74 10.08 -148.98 -1.50 -2.24 16 2 C -0.04 -0.06 2.01 71.24 0.14 0.08 16 3 Si 0.80 -3.28 30.74 68.60 2.11 -1.17 16 4 C -0.27 -1.10 5.34 -19.95 -0.11 -1.20 16 5 C 0.08 -0.17 9.96 83.47 0.83 0.66 16 6 N -0.36 -0.77 3.40 -351.92 -1.20 -1.97 16 7 C 0.11 -0.83 6.99 85.63 0.60 -0.24 16 8 C 0.50 0.05 7.86 87.66 0.69 0.73 16 9 O -0.56 -7.45 15.30 -3.02 -0.05 -7.50 16 10 N -0.69 4.38 5.26 -440.05 -2.32 2.07 16 11 C 0.12 -0.28 4.32 45.52 0.20 -0.09 16 12 H 0.07 0.34 7.46 -2.39 -0.02 0.32 16 13 C -0.13 0.69 7.29 31.12 0.23 0.92 16 14 C -0.06 0.37 3.85 -11.02 -0.04 0.32 16 15 H 0.12 -1.21 8.09 -2.38 -0.02 -1.23 16 16 C -0.08 0.12 5.29 -19.87 -0.11 0.01 16 17 C -0.13 -0.04 8.63 22.27 0.19 0.15 16 18 C -0.13 -0.14 10.05 22.27 0.22 0.09 16 19 C -0.14 -0.10 10.05 22.27 0.22 0.12 16 20 C -0.13 0.05 10.05 22.27 0.22 0.27 16 21 C -0.12 0.20 9.71 22.27 0.22 0.42 16 22 C -0.14 0.47 7.25 31.12 0.23 0.70 16 23 N -0.30 -3.65 11.63 -48.16 -0.56 -4.21 16 24 C 0.11 1.23 6.74 42.53 0.29 1.52 16 25 C -0.04 -0.50 5.80 -20.04 -0.12 -0.61 16 26 C -0.11 -1.16 8.95 22.48 0.20 -0.96 16 27 C -0.13 -0.96 10.03 22.24 0.22 -0.74 16 28 C -0.12 -0.72 10.04 22.31 0.22 -0.49 16 29 C -0.13 -1.02 10.03 22.24 0.22 -0.80 16 30 C -0.11 -1.30 9.75 22.48 0.22 -1.09 16 31 H 0.39 -2.54 8.70 -74.06 -0.64 -3.18 16 32 H 0.09 0.48 7.86 -2.39 -0.02 0.46 16 33 H -0.28 0.01 7.11 99.48 0.71 0.72 16 34 H -0.30 -1.21 7.11 99.48 0.71 -0.51 16 35 H 0.23 -3.14 6.40 -2.91 -0.02 -3.16 16 36 H 0.14 -1.64 8.14 -2.38 -0.02 -1.66 16 37 H 0.18 -3.48 8.07 -2.39 -0.02 -3.50 16 38 H 0.42 -6.06 8.70 -92.71 -0.81 -6.87 16 39 H 0.09 -0.33 7.73 -2.38 -0.02 -0.35 16 40 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 41 H 0.13 -0.20 6.65 -2.91 -0.02 -0.22 16 42 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 43 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 44 H 0.13 -0.51 8.06 -2.91 -0.02 -0.53 16 45 H 0.14 -0.84 8.05 -2.91 -0.02 -0.86 16 46 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 47 H 0.09 -0.16 6.31 -2.38 -0.02 -0.17 16 48 H 0.16 1.45 4.52 -2.91 -0.01 1.44 16 49 H 0.14 0.40 8.06 -2.91 -0.02 0.38 16 50 H 0.15 0.11 8.06 -2.91 -0.02 0.08 16 51 H 0.14 0.43 8.06 -2.91 -0.02 0.41 16 52 H 0.12 1.34 8.06 -2.91 -0.02 1.32 16 Total: 0.00 -34.89 429.99 1.04 -33.85 By element: Atomic # 1 Polarization: -18.17 SS G_CDS: -0.44 Total: -18.61 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 5.00 Total: -0.22 kcal Atomic # 7 Polarization: -0.04 SS G_CDS: -4.07 Total: -4.12 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -1.55 Total: -9.74 kcal Atomic # 14 Polarization: -3.28 SS G_CDS: 2.11 Total: -1.17 kcal Total: -34.89 1.04 -33.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_12622748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.624 kcal (2) G-P(sol) polarization free energy of solvation -34.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds