Wall clock time and date at job start Mon Mar 8 2021 02:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86302 * 109.46908 * 2 1 4 4 C 1.50698 * 109.46791 * 120.00057 * 2 1 3 5 5 C 1.38897 * 119.67169 * 244.97449 * 4 2 1 6 6 C 1.36478 * 120.61605 * 179.97438 * 5 4 2 7 7 C 1.40065 * 119.82725 * 0.04235 * 6 5 4 8 8 C 1.41594 * 133.37938 * 180.28144 * 7 6 5 9 9 C 1.35868 * 107.72311 * 180.13583 * 8 7 6 10 10 C 1.47064 * 125.42259 * 179.84566 * 9 8 7 11 11 O 1.21652 * 120.00030 * 359.69945 * 10 9 8 12 12 N 1.34776 * 119.99624 * 179.69604 * 10 9 8 13 13 C 1.46505 * 119.99597 * 180.02562 * 12 10 9 14 14 H 1.09000 * 112.85296 * 23.80222 * 13 12 10 15 15 C 1.53781 * 113.61334 * 154.99978 * 13 12 10 16 16 C 1.53786 * 87.17350 * 89.07333 * 15 13 12 17 17 H 1.09000 * 113.60973 * 270.92699 * 16 15 13 18 18 C 1.50690 * 113.61518 * 140.02616 * 16 15 13 19 19 C 1.38242 * 119.99897 * 299.72284 * 18 16 15 20 20 C 1.38233 * 120.00067 * 179.74459 * 19 18 16 21 21 C 1.38233 * 120.00024 * 0.55641 * 20 19 18 22 22 C 1.38243 * 120.00107 * 359.69720 * 21 20 19 23 23 C 1.38234 * 119.99777 * 0.02562 * 22 21 20 24 24 C 1.53781 * 113.61146 * 252.49455 * 13 12 10 25 25 N 1.38142 * 109.14969 * 359.58224 * 9 8 7 26 26 C 1.37491 * 108.78989 * 0.26644 * 25 9 8 27 27 C 1.37704 * 119.67723 * 65.00265 * 4 2 1 28 28 H 0.96704 * 113.99884 * 300.00373 * 1 2 3 29 29 H 1.09002 * 109.46852 * 240.00188 * 2 1 3 30 30 H 1.48504 * 109.99977 * 299.99682 * 3 2 1 31 31 H 1.48496 * 110.00140 * 61.32157 * 3 2 1 32 32 H 1.08002 * 119.69367 * 0.02562 * 5 4 2 33 33 H 1.07998 * 120.08631 * 180.02562 * 6 5 4 34 34 H 1.08000 * 126.14224 * 0.02562 * 8 7 6 35 35 H 0.96995 * 120.00232 * 359.97438 * 12 10 9 36 36 H 1.09002 * 113.61445 * 203.66333 * 15 13 12 37 37 H 1.09002 * 113.61408 * 334.48063 * 15 13 12 38 38 H 1.07998 * 120.00098 * 0.02562 * 19 18 16 39 39 H 1.08004 * 120.00162 * 180.27160 * 20 19 18 40 40 H 1.08003 * 120.00327 * 179.72368 * 21 20 19 41 41 H 1.07993 * 120.00460 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.00167 * 179.97438 * 23 22 21 43 43 H 1.09005 * 113.61471 * 25.43638 * 24 13 12 44 44 H 1.08996 * 113.61178 * 156.24980 * 24 13 12 45 45 H 0.96998 * 125.60818 * 180.23734 * 25 9 8 46 46 H 1.07994 * 120.09761 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6418 -0.0025 2.1913 6 6 3.1051 -0.6264 3.3132 7 6 2.8642 -1.9935 3.4998 8 6 3.1969 -2.9081 4.5283 9 6 2.7032 -4.1239 4.1762 10 6 2.8309 -5.3573 4.9670 11 8 3.4234 -5.3401 6.0294 12 7 2.2916 -6.5066 4.5146 13 6 2.4184 -7.7352 5.3026 14 1 2.5791 -7.5430 6.3634 15 6 1.3089 -8.7629 5.0240 16 6 2.2106 -9.3209 3.9102 17 1 2.0595 -8.8396 2.9440 18 6 2.2023 -10.8253 3.8237 19 6 2.6142 -11.5821 4.9049 20 6 2.6016 -12.9622 4.8274 21 6 2.1882 -13.5855 3.6649 22 6 1.7813 -12.8287 2.5819 23 6 1.7884 -11.4487 2.6613 24 6 3.4031 -8.7528 4.7028 25 7 2.0570 -4.0158 2.9601 26 6 2.1442 -2.7140 2.5265 27 6 1.6819 -2.0551 1.3909 28 1 -0.3933 0.4418 0.7651 29 1 1.7923 -0.5138 -0.8900 30 1 1.5615 2.4679 -1.2086 31 1 1.5879 2.4586 1.2242 32 1 2.8286 1.0518 2.0497 33 1 3.6562 -0.0676 4.0550 34 1 3.7461 -2.6805 5.4300 35 1 1.8188 -6.5202 3.6678 36 1 1.1451 -9.4618 5.8444 37 1 0.3843 -8.3183 4.6557 38 1 2.9414 -11.0951 5.8116 39 1 2.9192 -13.5534 5.6736 40 1 2.1826 -14.6637 3.6028 41 1 1.4579 -13.3156 1.6738 42 1 1.4710 -10.8574 1.8152 43 1 4.1697 -8.3001 4.0739 44 1 3.8129 -9.4478 5.4356 45 1 1.6148 -4.7394 2.4892 46 1 1.1285 -2.5969 0.6381 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705150_13158378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:02:02 Heat of formation + Delta-G solvation = 53.038153 kcal Electronic energy + Delta-G solvation = -28532.072182 eV Core-core repulsion = 24547.396904 eV Total energy + Delta-G solvation = -3984.675278 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.146 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.74364 -41.51177 -40.28452 -39.11331 -38.64246 -36.98142 -34.80242 -33.29770 -31.97101 -31.71944 -30.94561 -30.42383 -27.29030 -26.75116 -26.00608 -24.49177 -23.56550 -23.18413 -22.45294 -22.01647 -21.33274 -20.23913 -19.57962 -18.53389 -18.08031 -17.78474 -17.07394 -16.85855 -16.55057 -16.26853 -16.17272 -16.11509 -15.64841 -15.55173 -15.28608 -14.98896 -14.94964 -14.73145 -14.60111 -14.46155 -14.25510 -14.09725 -14.02123 -13.51227 -13.19501 -13.15505 -12.77421 -12.56085 -12.53160 -12.19566 -12.08031 -11.79971 -11.73953 -11.54749 -11.44213 -11.21889 -10.97652 -10.59987 -10.31181 -9.82561 -9.56638 -9.35011 -8.84413 -4.86254 -0.39308 0.41960 0.49295 0.52088 0.91955 1.34382 1.65137 1.70298 1.90383 2.01554 2.13285 2.75590 2.82206 3.39719 3.42919 3.53217 3.64389 3.65740 3.70273 3.73531 3.90025 4.03274 4.03608 4.14351 4.22037 4.23757 4.28211 4.29261 4.44243 4.51237 4.54891 4.60197 4.63975 4.67749 4.73467 4.78017 4.87514 4.91203 4.96578 4.98376 5.06335 5.11898 5.16978 5.29337 5.39772 5.44365 5.53149 5.56797 5.58056 5.63890 5.72470 5.97118 6.11791 6.21749 6.40319 6.50817 6.90627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.079 4.079 3 Si 0.768 3.232 4 C -0.086 4.086 5 C -0.149 4.149 6 C -0.058 4.058 7 C -0.134 4.134 8 C -0.117 4.117 9 C 0.010 3.990 10 C 0.589 3.411 11 O -0.558 6.558 12 N -0.695 5.695 13 C 0.115 3.885 14 H 0.093 0.907 15 C -0.124 4.124 16 C -0.066 4.066 17 H 0.109 0.891 18 C -0.079 4.079 19 C -0.127 4.127 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.131 4.131 23 C -0.128 4.128 24 C -0.142 4.142 25 N -0.564 5.564 26 C 0.108 3.892 27 C -0.109 4.109 28 H 0.386 0.614 29 H 0.128 0.872 30 H -0.306 1.306 31 H -0.282 1.282 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.155 0.845 35 H 0.411 0.589 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.067 0.933 44 H 0.099 0.901 45 H 0.431 0.569 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.360 -1.467 -2.842 3.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.188 4.188 3 Si 0.674 3.326 4 C -0.088 4.088 5 C -0.167 4.167 6 C -0.077 4.077 7 C -0.139 4.139 8 C -0.144 4.144 9 C -0.099 4.099 10 C 0.376 3.624 11 O -0.436 6.436 12 N -0.346 5.346 13 C 0.010 3.990 14 H 0.111 0.889 15 C -0.162 4.162 16 C -0.084 4.084 17 H 0.128 0.872 18 C -0.079 4.079 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.156 4.156 22 C -0.149 4.149 23 C -0.146 4.146 24 C -0.180 4.180 25 N -0.170 5.170 26 C -0.003 4.003 27 C -0.129 4.129 28 H 0.236 0.764 29 H 0.146 0.854 30 H -0.234 1.234 31 H -0.209 1.209 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.173 0.827 35 H 0.248 0.752 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.086 0.914 44 H 0.117 0.883 45 H 0.272 0.728 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.123 -1.149 -2.642 2.884 hybrid contribution -1.452 -0.755 0.010 1.636 sum -1.575 -1.904 -2.632 3.610 Atomic orbital electron populations 1.86576 1.18435 1.80388 1.50223 1.25208 0.83434 1.11714 0.98486 0.93903 0.90437 0.72113 0.76160 1.20066 0.98531 0.93462 0.96701 1.20725 1.00920 1.00584 0.94514 1.20625 0.97693 0.91679 0.97679 1.18438 1.04349 0.95124 0.95975 1.21112 1.02602 0.90564 1.00119 1.19936 1.05323 0.95413 0.89268 1.17282 0.78384 0.82375 0.84353 1.90863 1.43609 1.85613 1.23500 1.45421 1.56586 1.07627 1.24925 1.21919 0.98021 0.82858 0.96174 0.88919 1.23372 0.97083 0.96768 0.98961 1.21636 0.96867 0.90624 0.99315 0.87248 1.19850 0.98777 0.95352 0.93942 1.21239 1.00245 0.93959 0.99062 1.21430 0.99740 0.95142 0.98546 1.21450 0.99572 1.00828 0.93760 1.21441 0.99763 0.94413 0.99280 1.21323 1.00247 0.94940 0.98076 1.23601 0.96652 0.97808 0.99950 1.41775 1.48352 1.09100 1.17789 1.18448 1.00771 0.84376 0.96677 1.20010 1.02780 0.94146 0.95969 0.76442 0.85436 1.23414 1.20882 0.83780 0.83565 0.82685 0.75197 0.88006 0.89431 0.84977 0.84961 0.85090 0.84905 0.84785 0.91373 0.88313 0.72818 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.47 12.83 -148.98 -1.91 -2.38 16 2 C -0.08 0.18 2.79 71.24 0.20 0.38 16 3 Si 0.77 -2.32 29.85 68.60 2.05 -0.27 16 4 C -0.09 0.10 5.36 -19.83 -0.11 0.00 16 5 C -0.15 0.25 8.59 22.02 0.19 0.44 16 6 C -0.06 0.00 10.06 22.30 0.22 0.22 16 7 C -0.13 -0.42 6.16 -21.36 -0.13 -0.55 16 8 C -0.12 -0.53 10.53 22.55 0.24 -0.29 16 9 C 0.01 0.03 6.97 39.92 0.28 0.30 16 10 C 0.59 2.48 7.80 86.56 0.68 3.16 16 11 O -0.56 -6.97 16.44 -4.19 -0.07 -7.04 16 12 N -0.69 1.96 5.26 -443.62 -2.33 -0.37 16 13 C 0.12 -0.26 4.32 45.52 0.20 -0.06 16 14 H 0.09 0.18 7.46 -2.39 -0.02 0.16 16 15 C -0.12 0.69 7.29 31.12 0.23 0.91 16 16 C -0.07 0.32 3.87 -10.92 -0.04 0.28 16 17 H 0.11 -0.84 8.10 -2.39 -0.02 -0.86 16 18 C -0.08 0.08 5.29 -19.87 -0.11 -0.03 16 19 C -0.13 0.02 8.63 22.27 0.19 0.22 16 20 C -0.13 -0.08 10.05 22.27 0.22 0.15 16 21 C -0.14 -0.11 10.05 22.27 0.22 0.11 16 22 C -0.13 -0.04 10.05 22.27 0.22 0.18 16 23 C -0.13 0.07 9.71 22.27 0.22 0.29 16 24 C -0.14 0.39 7.26 31.21 0.23 0.62 16 25 N -0.56 1.27 6.07 -177.18 -1.08 0.19 16 26 C 0.11 0.12 7.25 39.13 0.28 0.41 16 27 C -0.11 0.05 9.69 22.37 0.22 0.27 16 28 H 0.39 -1.66 8.70 -74.05 -0.64 -2.30 16 29 H 0.13 -0.54 7.96 -2.39 -0.02 -0.56 16 30 H -0.31 -1.52 7.11 99.48 0.71 -0.82 16 31 H -0.28 -0.20 7.00 99.48 0.70 0.49 16 32 H 0.15 -0.77 4.78 -2.91 -0.01 -0.78 16 33 H 0.15 -0.55 8.06 -2.91 -0.02 -0.57 16 34 H 0.16 0.65 8.06 -2.91 -0.02 0.62 16 35 H 0.41 -3.71 7.76 -92.71 -0.72 -4.43 16 36 H 0.10 -0.53 7.73 -2.39 -0.02 -0.54 16 37 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H 0.13 -0.39 6.65 -2.91 -0.02 -0.41 16 39 H 0.13 -0.32 8.06 -2.91 -0.02 -0.34 16 40 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 41 H 0.13 -0.38 8.06 -2.91 -0.02 -0.41 16 42 H 0.13 -0.57 8.06 -2.91 -0.02 -0.60 16 43 H 0.07 -0.06 8.14 -2.38 -0.02 -0.08 16 44 H 0.10 -0.27 6.32 -2.39 -0.02 -0.29 16 45 H 0.43 -3.89 8.12 -92.71 -0.75 -4.64 16 46 H 0.14 -0.39 8.06 -2.91 -0.02 -0.42 16 Total: 0.00 -19.88 382.50 -0.73 -20.62 By element: Atomic # 1 Polarization: -16.71 SS G_CDS: -1.04 Total: -17.75 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 3.65 Total: 7.00 kcal Atomic # 7 Polarization: 3.23 SS G_CDS: -3.41 Total: -0.18 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -1.98 Total: -9.42 kcal Atomic # 14 Polarization: -2.32 SS G_CDS: 2.05 Total: -0.27 kcal Total: -19.88 -0.73 -20.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_13158378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.654 kcal (2) G-P(sol) polarization free energy of solvation -19.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds