Wall clock time and date at job start Mon Mar 8 2021 02:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.47093 * 239.99932 * 2 1 3 5 5 C 1.38264 * 119.94736 * 300.00039 * 4 2 1 6 6 C 1.38142 * 120.05865 * 179.97438 * 5 4 2 7 7 C 1.38732 * 119.94368 * 0.02562 * 6 5 4 8 8 O 1.35900 * 120.05724 * 180.02562 * 7 6 5 9 9 C 1.42898 * 117.00172 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47319 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47466 * 180.02562 * 10 9 8 12 12 O 1.21282 * 120.00011 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00115 * 180.02562 * 13 11 10 15 15 H 1.08995 * 112.84655 * 23.80332 * 14 13 11 16 16 C 1.53784 * 113.61249 * 155.00034 * 14 13 11 17 17 C 1.53781 * 87.07976 * 89.11310 * 16 14 13 18 18 H 1.08995 * 113.61679 * 270.88089 * 17 16 14 19 19 C 1.50700 * 113.61205 * 140.06460 * 17 16 14 20 20 C 1.38245 * 119.99814 * 299.72395 * 19 17 16 21 21 C 1.38231 * 119.99739 * 179.74342 * 20 19 17 22 22 C 1.38233 * 119.99934 * 0.53060 * 21 20 19 23 23 C 1.38237 * 120.00423 * 359.74818 * 22 21 20 24 24 C 1.38230 * 120.00184 * 120.00214 * 19 17 16 25 25 C 1.53780 * 87.08197 * 25.43268 * 17 16 14 26 26 C 1.38732 * 119.88726 * 0.26951 * 7 6 5 27 27 C 1.38138 * 119.94426 * 359.47443 * 26 7 6 28 28 H 0.96693 * 113.99949 * 60.00152 * 1 2 3 29 29 H 1.09003 * 109.47485 * 120.00453 * 2 1 3 30 30 H 1.48502 * 109.99736 * 298.68433 * 3 2 1 31 31 H 1.48501 * 109.99441 * 60.00073 * 3 2 1 32 32 H 1.08009 * 119.97297 * 359.97438 * 5 4 2 33 33 H 1.08005 * 120.03049 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.47259 * 300.00149 * 9 8 7 35 35 H 1.09001 * 109.47074 * 60.00171 * 9 8 7 36 36 H 1.09002 * 109.47153 * 300.00307 * 10 9 8 37 37 H 1.08998 * 109.47533 * 59.99936 * 10 9 8 38 38 H 0.97003 * 119.99640 * 0.02562 * 13 11 10 39 39 H 1.09003 * 113.61061 * 203.66437 * 16 14 13 40 40 H 1.09000 * 113.61361 * 334.48216 * 16 14 13 41 41 H 1.08000 * 119.99586 * 0.02562 * 20 19 17 42 42 H 1.08001 * 119.99968 * 180.29669 * 21 20 19 43 43 H 1.08004 * 120.00106 * 179.76211 * 22 21 20 44 44 H 1.07997 * 120.00080 * 179.97438 * 23 22 21 45 45 H 1.07996 * 119.99819 * 359.97438 * 24 19 17 46 46 H 1.09005 * 113.61311 * 220.02010 * 25 17 16 47 47 H 1.08997 * 113.62028 * 89.11121 * 25 17 16 48 48 H 1.08003 * 120.02290 * 179.72651 * 26 7 6 49 49 H 1.07997 * 119.97727 * 180.23510 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.5966 -2.0342 -1.4482 6 6 2.0554 -2.6875 -2.5756 7 6 2.8531 -2.0144 -3.4895 8 8 3.3052 -2.6547 -4.5997 9 6 4.1213 -1.8993 -5.4972 10 6 4.5320 -2.7812 -6.6780 11 6 5.3931 -1.9848 -7.6242 12 8 5.6531 -0.8261 -7.3781 13 7 5.8742 -2.5602 -8.7440 14 6 6.7118 -1.7861 -9.6635 15 1 7.2092 -0.9466 -9.1780 16 6 7.6550 -2.6524 -10.5150 17 6 6.5157 -2.7424 -11.5439 18 1 5.8389 -3.5797 -11.3739 19 6 6.9844 -2.6498 -12.9732 20 6 7.6504 -1.5200 -13.4104 21 6 8.0850 -1.4373 -14.7200 22 6 7.8440 -2.4796 -15.5953 23 6 7.1730 -3.6070 -15.1597 24 6 6.7433 -3.6921 -13.8486 25 6 6.0018 -1.4095 -10.9746 26 6 3.1925 -0.6880 -3.2657 27 6 2.7269 -0.0376 -2.1395 28 1 -0.3933 0.4416 -0.7650 29 1 1.7924 -0.5139 0.8899 30 1 1.5878 2.4585 -1.2242 31 1 1.5615 2.4678 1.2085 32 1 0.9759 -2.5579 -0.7361 33 1 1.7940 -3.7216 -2.7450 34 1 3.5595 -1.0399 -5.8632 35 1 5.0133 -1.5544 -4.9743 36 1 5.0938 -3.6404 -6.3117 37 1 3.6402 -3.1265 -7.2011 38 1 5.6659 -3.4869 -8.9411 39 1 8.5310 -2.1156 -10.8793 40 1 7.9054 -3.6079 -10.0541 41 1 7.8351 -0.7039 -12.7274 42 1 8.6095 -0.5566 -15.0603 43 1 8.1802 -2.4134 -16.6196 44 1 6.9843 -4.4211 -15.8438 45 1 6.2195 -4.5730 -13.5081 46 1 4.9165 -1.3623 -10.8854 47 1 6.4258 -0.5330 -11.4644 48 1 3.8170 -0.1632 -3.9736 49 1 2.9877 0.9960 -1.9667 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9705150_4549602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:03:42 Heat of formation + Delta-G solvation = -28.324803 kcal Electronic energy + Delta-G solvation = -28945.137320 eV Core-core repulsion = 24804.592261 eV Total energy + Delta-G solvation = -4140.545059 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.72461 -41.24331 -40.37174 -39.22097 -38.73225 -37.23292 -34.68625 -33.38017 -32.08003 -31.89952 -31.64471 -31.24615 -26.94981 -26.84965 -26.18150 -25.34934 -23.73538 -23.42110 -22.49450 -22.18771 -21.60661 -20.20232 -19.53317 -18.47197 -18.18800 -17.63180 -17.50353 -17.23450 -16.91196 -16.39831 -16.25791 -16.19405 -16.08363 -15.94115 -15.59400 -15.13637 -15.03251 -14.69784 -14.56967 -14.38007 -14.37422 -14.22530 -14.14153 -14.00017 -13.59080 -13.40549 -13.18370 -12.91750 -12.89506 -12.75991 -12.26134 -12.16484 -12.03523 -11.84419 -11.80476 -11.79204 -11.54417 -11.27791 -11.04104 -10.55203 -10.20530 -9.98734 -9.85196 -9.60032 -9.15969 -4.92832 0.33765 0.36161 0.39126 0.46640 1.33045 1.46011 1.62703 1.63185 1.99559 2.40675 2.70835 2.79046 3.33040 3.41524 3.46226 3.55990 3.60545 3.72056 3.78683 3.81098 3.84874 3.85055 3.95624 3.98541 4.07170 4.13423 4.20840 4.24877 4.31171 4.39685 4.48284 4.53898 4.55867 4.57905 4.60144 4.61782 4.62266 4.72624 4.76524 4.85289 4.88684 5.00050 5.01604 5.06455 5.11024 5.22503 5.33445 5.42763 5.53742 5.54301 5.60739 5.68084 5.75369 6.06504 6.28716 6.37974 6.44607 7.04433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.069 4.069 3 Si 0.680 3.320 4 C -0.157 4.157 5 C -0.053 4.053 6 C -0.151 4.151 7 C 0.138 3.862 8 O -0.316 6.316 9 C 0.074 3.926 10 C -0.142 4.142 11 C 0.523 3.477 12 O -0.535 6.535 13 N -0.711 5.711 14 C 0.118 3.882 15 H 0.106 0.894 16 C -0.135 4.135 17 C -0.074 4.074 18 H 0.097 0.903 19 C -0.073 4.073 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.117 4.117 25 C -0.144 4.144 26 C -0.203 4.203 27 C -0.075 4.075 28 H 0.376 0.624 29 H 0.118 0.882 30 H -0.261 1.261 31 H -0.257 1.257 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.404 0.596 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.134 0.866 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.751 -2.846 -3.007 4.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.179 4.179 3 Si 0.582 3.418 4 C -0.157 4.157 5 C -0.071 4.071 6 C -0.169 4.169 7 C 0.092 3.908 8 O -0.230 6.230 9 C -0.002 4.002 10 C -0.181 4.181 11 C 0.310 3.690 12 O -0.412 6.412 13 N -0.363 5.363 14 C 0.013 3.987 15 H 0.124 0.876 16 C -0.173 4.173 17 C -0.092 4.092 18 H 0.115 0.885 19 C -0.073 4.073 20 C -0.135 4.135 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.136 4.136 24 C -0.135 4.135 25 C -0.182 4.182 26 C -0.221 4.221 27 C -0.093 4.093 28 H 0.223 0.777 29 H 0.135 0.865 30 H -0.186 1.186 31 H -0.182 1.182 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.238 0.762 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.093 0.907 47 H 0.114 0.886 48 H 0.152 0.848 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.793 -1.668 -2.333 4.003 hybrid contribution -1.056 -0.546 -0.951 1.522 sum 1.737 -2.214 -3.284 4.324 Atomic orbital electron populations 1.86588 1.17871 1.79938 1.49343 1.24933 0.83820 1.10704 0.98419 0.95067 0.91810 0.74734 0.80208 1.20183 1.02014 0.95526 0.98023 1.20830 0.96943 0.93437 0.95929 1.20503 1.00930 1.01062 0.94438 1.18993 0.94044 0.91024 0.86712 1.85974 1.65104 1.40456 1.31460 1.22426 0.94781 0.93812 0.89169 1.21468 1.01336 0.99931 0.95412 1.20301 0.79872 0.87451 0.81396 1.90756 1.58577 1.17202 1.74641 1.45634 1.52360 1.15710 1.22584 1.21884 0.92007 0.95532 0.89301 0.87558 1.23424 0.97250 1.00933 0.95691 1.21593 0.97881 0.99001 0.90722 0.88502 1.19674 0.98355 0.94370 0.94870 1.21023 0.98729 0.97725 0.96050 1.21185 0.99759 0.98863 0.93729 1.21209 0.99125 0.94008 0.99848 1.21191 0.98299 0.98147 0.95965 1.21069 1.00377 0.98463 0.93582 1.23565 1.01489 0.97409 0.95758 1.21267 1.05756 0.94406 1.00696 1.20804 0.96044 0.99224 0.93197 0.77684 0.86469 1.18589 1.18227 0.84895 0.84874 0.90897 0.90757 0.87355 0.87428 0.76167 0.88283 0.90427 0.85966 0.85979 0.86061 0.86019 0.86174 0.90710 0.88567 0.84783 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.90 12.77 -35.23 -0.45 -1.35 16 2 C -0.07 -0.02 2.82 36.01 0.10 0.08 16 3 Si 0.68 -0.21 29.78 -169.99 -5.06 -5.27 16 4 C -0.16 -0.13 5.39 -104.60 -0.56 -0.69 16 5 C -0.05 -0.05 9.60 -39.61 -0.38 -0.43 16 6 C -0.15 -0.20 9.99 -39.43 -0.39 -0.59 16 7 C 0.14 0.25 6.69 -39.22 -0.26 -0.02 16 8 O -0.32 -0.43 10.14 -19.43 -0.20 -0.62 16 9 C 0.07 -0.01 4.03 37.16 0.15 0.14 16 10 C -0.14 0.32 6.07 -27.89 -0.17 0.15 16 11 C 0.52 -0.10 7.83 -10.99 -0.09 -0.19 16 12 O -0.54 -2.04 15.58 5.56 0.09 -1.96 16 13 N -0.71 1.64 5.26 -53.02 -0.28 1.36 16 14 C 0.12 -0.18 4.32 -67.11 -0.29 -0.47 16 15 H 0.11 0.02 7.46 -51.93 -0.39 -0.37 16 16 C -0.13 0.35 7.29 -25.92 -0.19 0.16 16 17 C -0.07 0.16 3.85 -90.96 -0.35 -0.19 16 18 H 0.10 -0.29 8.09 -51.93 -0.42 -0.71 16 19 C -0.07 0.02 5.29 -104.62 -0.55 -0.53 16 20 C -0.12 0.01 8.63 -39.58 -0.34 -0.33 16 21 C -0.12 -0.02 10.05 -39.59 -0.40 -0.42 16 22 C -0.12 -0.04 10.05 -39.58 -0.40 -0.43 16 23 C -0.12 -0.02 10.05 -39.58 -0.40 -0.42 16 24 C -0.12 0.00 9.71 -39.58 -0.38 -0.38 16 25 C -0.14 0.22 7.25 -25.92 -0.19 0.04 16 26 C -0.20 -0.23 9.04 -39.44 -0.36 -0.58 16 27 C -0.08 -0.04 8.66 -39.61 -0.34 -0.39 16 28 H 0.38 -0.37 8.70 45.56 0.40 0.03 16 29 H 0.12 -0.06 7.96 -51.93 -0.41 -0.47 16 30 H -0.26 -0.46 7.11 56.52 0.40 -0.06 16 31 H -0.26 -0.76 7.11 56.52 0.40 -0.35 16 32 H 0.13 0.02 8.06 -52.48 -0.42 -0.41 16 33 H 0.13 0.02 8.06 -52.48 -0.42 -0.41 16 34 H 0.07 0.02 7.63 -51.93 -0.40 -0.37 16 35 H 0.07 0.01 7.61 -51.93 -0.39 -0.39 16 36 H 0.11 -0.40 8.14 -51.93 -0.42 -0.83 16 37 H 0.11 -0.39 8.14 -51.93 -0.42 -0.81 16 38 H 0.40 -1.96 8.70 -40.82 -0.36 -2.31 16 39 H 0.10 -0.23 7.73 -51.93 -0.40 -0.64 16 40 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 41 H 0.12 -0.19 6.65 -52.49 -0.35 -0.53 16 42 H 0.12 -0.17 8.06 -52.49 -0.42 -0.59 16 43 H 0.12 -0.15 8.06 -52.48 -0.42 -0.57 16 44 H 0.12 -0.16 8.06 -52.49 -0.42 -0.59 16 45 H 0.12 -0.19 8.05 -52.49 -0.42 -0.62 16 46 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 47 H 0.10 -0.15 6.31 -51.93 -0.33 -0.48 16 48 H 0.13 0.01 6.30 -52.48 -0.33 -0.32 16 49 H 0.13 -0.14 4.87 -52.49 -0.26 -0.40 16 LS Contribution 403.29 15.07 6.08 6.08 Total: 0.00 -7.94 403.29 -12.68 -20.62 By element: Atomic # 1 Polarization: -6.28 SS G_CDS: -7.06 Total: -13.34 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -5.79 Total: -5.51 kcal Atomic # 7 Polarization: 1.64 SS G_CDS: -0.28 Total: 1.36 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: -0.56 Total: -3.93 kcal Atomic # 14 Polarization: -0.21 SS G_CDS: -5.06 Total: -5.27 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -7.94 -12.68 -20.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_4549602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.707 kcal (2) G-P(sol) polarization free energy of solvation -7.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds