Wall clock time and date at job start Mon Mar 8 2021 02:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.47093 * 239.99932 * 2 1 3 5 5 C 1.38264 * 119.94736 * 300.00039 * 4 2 1 6 6 C 1.38142 * 120.05865 * 179.97438 * 5 4 2 7 7 C 1.38732 * 119.94368 * 0.02562 * 6 5 4 8 8 O 1.35900 * 120.05724 * 180.02562 * 7 6 5 9 9 C 1.42898 * 117.00172 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47319 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47466 * 180.02562 * 10 9 8 12 12 O 1.21282 * 120.00011 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00115 * 180.02562 * 13 11 10 15 15 H 1.08995 * 112.84655 * 23.80332 * 14 13 11 16 16 C 1.53784 * 113.61249 * 155.00034 * 14 13 11 17 17 C 1.53781 * 87.07976 * 89.11310 * 16 14 13 18 18 H 1.08995 * 113.61679 * 270.88089 * 17 16 14 19 19 C 1.50700 * 113.61205 * 140.06460 * 17 16 14 20 20 C 1.38245 * 119.99814 * 299.72395 * 19 17 16 21 21 C 1.38231 * 119.99739 * 179.74342 * 20 19 17 22 22 C 1.38233 * 119.99934 * 0.53060 * 21 20 19 23 23 C 1.38237 * 120.00423 * 359.74818 * 22 21 20 24 24 C 1.38230 * 120.00184 * 120.00214 * 19 17 16 25 25 C 1.53780 * 87.08197 * 25.43268 * 17 16 14 26 26 C 1.38732 * 119.88726 * 0.26951 * 7 6 5 27 27 C 1.38138 * 119.94426 * 359.47443 * 26 7 6 28 28 H 0.96693 * 113.99949 * 60.00152 * 1 2 3 29 29 H 1.09003 * 109.47485 * 120.00453 * 2 1 3 30 30 H 1.48502 * 109.99736 * 298.68433 * 3 2 1 31 31 H 1.48501 * 109.99441 * 60.00073 * 3 2 1 32 32 H 1.08009 * 119.97297 * 359.97438 * 5 4 2 33 33 H 1.08005 * 120.03049 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.47259 * 300.00149 * 9 8 7 35 35 H 1.09001 * 109.47074 * 60.00171 * 9 8 7 36 36 H 1.09002 * 109.47153 * 300.00307 * 10 9 8 37 37 H 1.08998 * 109.47533 * 59.99936 * 10 9 8 38 38 H 0.97003 * 119.99640 * 0.02562 * 13 11 10 39 39 H 1.09003 * 113.61061 * 203.66437 * 16 14 13 40 40 H 1.09000 * 113.61361 * 334.48216 * 16 14 13 41 41 H 1.08000 * 119.99586 * 0.02562 * 20 19 17 42 42 H 1.08001 * 119.99968 * 180.29669 * 21 20 19 43 43 H 1.08004 * 120.00106 * 179.76211 * 22 21 20 44 44 H 1.07997 * 120.00080 * 179.97438 * 23 22 21 45 45 H 1.07996 * 119.99819 * 359.97438 * 24 19 17 46 46 H 1.09005 * 113.61311 * 220.02010 * 25 17 16 47 47 H 1.08997 * 113.62028 * 89.11121 * 25 17 16 48 48 H 1.08003 * 120.02290 * 179.72651 * 26 7 6 49 49 H 1.07997 * 119.97727 * 180.23510 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.5966 -2.0342 -1.4482 6 6 2.0554 -2.6875 -2.5756 7 6 2.8531 -2.0144 -3.4895 8 8 3.3052 -2.6547 -4.5997 9 6 4.1213 -1.8993 -5.4972 10 6 4.5320 -2.7812 -6.6780 11 6 5.3931 -1.9848 -7.6242 12 8 5.6531 -0.8261 -7.3781 13 7 5.8742 -2.5602 -8.7440 14 6 6.7118 -1.7861 -9.6635 15 1 7.2092 -0.9466 -9.1780 16 6 7.6550 -2.6524 -10.5150 17 6 6.5157 -2.7424 -11.5439 18 1 5.8389 -3.5797 -11.3739 19 6 6.9844 -2.6498 -12.9732 20 6 7.6504 -1.5200 -13.4104 21 6 8.0850 -1.4373 -14.7200 22 6 7.8440 -2.4796 -15.5953 23 6 7.1730 -3.6070 -15.1597 24 6 6.7433 -3.6921 -13.8486 25 6 6.0018 -1.4095 -10.9746 26 6 3.1925 -0.6880 -3.2657 27 6 2.7269 -0.0376 -2.1395 28 1 -0.3933 0.4416 -0.7650 29 1 1.7924 -0.5139 0.8899 30 1 1.5878 2.4585 -1.2242 31 1 1.5615 2.4678 1.2085 32 1 0.9759 -2.5579 -0.7361 33 1 1.7940 -3.7216 -2.7450 34 1 3.5595 -1.0399 -5.8632 35 1 5.0133 -1.5544 -4.9743 36 1 5.0938 -3.6404 -6.3117 37 1 3.6402 -3.1265 -7.2011 38 1 5.6659 -3.4869 -8.9411 39 1 8.5310 -2.1156 -10.8793 40 1 7.9054 -3.6079 -10.0541 41 1 7.8351 -0.7039 -12.7274 42 1 8.6095 -0.5566 -15.0603 43 1 8.1802 -2.4134 -16.6196 44 1 6.9843 -4.4211 -15.8438 45 1 6.2195 -4.5730 -13.5081 46 1 4.9165 -1.3623 -10.8854 47 1 6.4258 -0.5330 -11.4644 48 1 3.8170 -0.1632 -3.9736 49 1 2.9877 0.9960 -1.9667 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705150_4549602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:03:41 Heat of formation + Delta-G solvation = -23.775380 kcal Electronic energy + Delta-G solvation = -28944.940042 eV Core-core repulsion = 24804.592261 eV Total energy + Delta-G solvation = -4140.347781 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.65836 -41.25761 -40.34743 -39.24152 -38.69181 -37.29895 -34.65017 -33.33028 -32.09218 -31.85193 -31.62982 -31.22602 -26.92327 -26.70550 -26.16514 -25.30583 -23.71561 -23.39999 -22.43974 -22.20897 -21.54718 -20.08939 -19.54764 -18.49046 -18.16414 -17.59456 -17.47109 -17.18542 -16.89884 -16.41250 -16.25336 -16.13670 -16.07761 -15.93513 -15.60785 -15.06143 -14.99069 -14.73115 -14.54086 -14.35988 -14.32297 -14.27539 -14.06238 -13.96407 -13.49539 -13.45656 -13.12359 -12.86269 -12.85276 -12.68636 -12.29483 -12.15775 -12.06362 -11.78710 -11.73943 -11.67904 -11.61362 -11.17036 -11.07020 -10.60978 -10.12922 -10.03915 -9.81216 -9.54561 -9.21969 -4.93697 0.27776 0.30610 0.43647 0.50527 1.31410 1.50191 1.58318 1.68698 1.93694 2.46916 2.65145 2.84007 3.42671 3.47462 3.55332 3.68507 3.71103 3.73242 3.82678 3.88471 3.90967 3.95300 4.02411 4.06561 4.15738 4.25559 4.26024 4.31499 4.34429 4.44348 4.56702 4.58664 4.63462 4.66287 4.69123 4.70188 4.76895 4.78804 4.86259 4.97566 4.97665 5.00970 5.13717 5.16245 5.18091 5.19088 5.28722 5.48893 5.53369 5.59722 5.65051 5.72005 5.75448 6.13287 6.31868 6.45672 6.48611 7.15242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.074 4.074 3 Si 0.758 3.242 4 C -0.159 4.159 5 C -0.059 4.059 6 C -0.158 4.158 7 C 0.123 3.877 8 O -0.321 6.321 9 C 0.072 3.928 10 C -0.132 4.132 11 C 0.522 3.478 12 O -0.582 6.582 13 N -0.698 5.698 14 C 0.116 3.884 15 H 0.086 0.914 16 C -0.125 4.125 17 C -0.066 4.066 18 H 0.111 0.889 19 C -0.079 4.079 20 C -0.128 4.128 21 C -0.131 4.131 22 C -0.139 4.139 23 C -0.131 4.131 24 C -0.128 4.128 25 C -0.143 4.143 26 C -0.210 4.210 27 C -0.080 4.080 28 H 0.385 0.615 29 H 0.127 0.873 30 H -0.287 1.287 31 H -0.302 1.302 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.419 0.581 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.068 0.932 47 H 0.093 0.907 48 H 0.140 0.860 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 -4.099 -3.154 5.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.183 4.183 3 Si 0.664 3.336 4 C -0.160 4.160 5 C -0.077 4.077 6 C -0.177 4.177 7 C 0.078 3.922 8 O -0.235 6.235 9 C -0.003 4.003 10 C -0.172 4.172 11 C 0.310 3.690 12 O -0.462 6.462 13 N -0.350 5.350 14 C 0.011 3.989 15 H 0.104 0.896 16 C -0.163 4.163 17 C -0.084 4.084 18 H 0.130 0.870 19 C -0.079 4.079 20 C -0.146 4.146 21 C -0.149 4.149 22 C -0.157 4.157 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.182 4.182 26 C -0.228 4.228 27 C -0.097 4.097 28 H 0.234 0.766 29 H 0.144 0.856 30 H -0.214 1.214 31 H -0.230 1.230 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.256 0.744 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.153 0.847 46 H 0.086 0.914 47 H 0.111 0.889 48 H 0.157 0.843 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.866 -2.975 -2.511 4.834 hybrid contribution -1.097 -0.123 -0.923 1.439 sum 1.769 -3.098 -3.434 4.952 Atomic orbital electron populations 1.86558 1.18619 1.80298 1.50169 1.25094 0.83299 1.11264 0.98662 0.94165 0.90593 0.72572 0.76247 1.20257 1.01980 0.95572 0.98158 1.20975 0.97026 0.93649 0.96047 1.20673 1.00929 1.01596 0.94489 1.19187 0.94496 0.91425 0.87098 1.85955 1.65295 1.40728 1.31494 1.22460 0.94189 0.94106 0.89571 1.21433 1.01911 0.99570 0.94250 1.20655 0.79589 0.86947 0.81822 1.90741 1.60418 1.19266 1.75755 1.45533 1.51417 1.16312 1.21735 1.21823 0.92415 0.95488 0.89205 0.89569 1.23354 0.96830 1.01099 0.94994 1.21598 0.98113 0.98965 0.89755 0.87049 1.19888 0.98119 0.94215 0.95688 1.21231 0.98855 0.98274 0.96243 1.21424 1.00080 0.99375 0.94051 1.21445 0.99464 0.94256 1.00518 1.21447 0.98367 0.98549 0.96526 1.21335 1.00494 0.99130 0.93614 1.23543 1.00984 0.97865 0.95779 1.21413 1.05923 0.94445 1.01054 1.20990 0.95871 0.99908 0.92960 0.76570 0.85576 1.21394 1.22980 0.84187 0.84013 0.91789 0.91379 0.85319 0.85555 0.74357 0.88510 0.89285 0.85133 0.85030 0.85106 0.84870 0.84682 0.91370 0.88853 0.84251 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.83 12.77 -148.98 -1.90 -3.73 16 2 C -0.07 -0.03 2.82 71.24 0.20 0.17 16 3 Si 0.76 -0.36 29.78 68.60 2.04 1.68 16 4 C -0.16 -0.23 5.39 -19.85 -0.11 -0.34 16 5 C -0.06 -0.12 9.60 22.25 0.21 0.10 16 6 C -0.16 -0.42 9.99 22.37 0.22 -0.20 16 7 C 0.12 0.47 6.69 22.51 0.15 0.62 16 8 O -0.32 -0.87 10.14 -92.43 -0.94 -1.81 16 9 C 0.07 0.00 4.03 71.98 0.29 0.29 16 10 C -0.13 0.70 6.07 29.85 0.18 0.89 16 11 C 0.52 -0.21 7.83 87.66 0.69 0.48 16 12 O -0.58 -5.13 15.58 -3.04 -0.05 -5.18 16 13 N -0.70 3.64 5.26 -440.03 -2.32 1.32 16 14 C 0.12 -0.34 4.32 45.52 0.20 -0.15 16 15 H 0.09 0.14 7.46 -2.39 -0.02 0.12 16 16 C -0.12 0.72 7.29 31.12 0.23 0.94 16 17 C -0.07 0.33 3.85 -11.01 -0.04 0.29 16 18 H 0.11 -0.87 8.09 -2.39 -0.02 -0.89 16 19 C -0.08 0.07 5.29 -19.86 -0.11 -0.03 16 20 C -0.13 -0.01 8.63 22.27 0.19 0.19 16 21 C -0.13 -0.11 10.05 22.27 0.22 0.12 16 22 C -0.14 -0.13 10.05 22.27 0.22 0.10 16 23 C -0.13 -0.05 10.05 22.27 0.22 0.18 16 24 C -0.13 0.06 9.71 22.27 0.22 0.28 16 25 C -0.14 0.43 7.25 31.12 0.23 0.65 16 26 C -0.21 -0.55 9.04 22.36 0.20 -0.35 16 27 C -0.08 -0.09 8.66 22.25 0.19 0.10 16 28 H 0.39 -0.71 8.70 -74.06 -0.64 -1.36 16 29 H 0.13 -0.19 7.96 -2.39 -0.02 -0.21 16 30 H -0.29 -1.10 7.11 99.48 0.71 -0.39 16 31 H -0.30 -2.11 7.11 99.48 0.71 -1.41 16 32 H 0.14 0.00 8.06 -2.91 -0.02 -0.02 16 33 H 0.14 0.02 8.06 -2.91 -0.02 0.00 16 34 H 0.06 0.10 7.63 -2.39 -0.02 0.09 16 35 H 0.07 0.07 7.61 -2.39 -0.02 0.06 16 36 H 0.13 -1.18 8.14 -2.39 -0.02 -1.20 16 37 H 0.13 -1.12 8.14 -2.39 -0.02 -1.14 16 38 H 0.42 -4.75 8.70 -92.71 -0.81 -5.56 16 39 H 0.10 -0.48 7.73 -2.39 -0.02 -0.49 16 40 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 41 H 0.13 -0.33 6.65 -2.91 -0.02 -0.35 16 42 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 43 H 0.13 -0.27 8.06 -2.91 -0.02 -0.30 16 44 H 0.13 -0.39 8.06 -2.91 -0.02 -0.41 16 45 H 0.14 -0.58 8.05 -2.91 -0.02 -0.61 16 46 H 0.07 -0.10 8.14 -2.38 -0.02 -0.12 16 47 H 0.09 -0.23 6.31 -2.39 -0.02 -0.24 16 48 H 0.14 0.13 6.30 -2.91 -0.02 0.11 16 49 H 0.14 -0.35 4.87 -2.91 -0.01 -0.36 16 Total: 0.00 -19.33 403.29 0.22 -19.10 By element: Atomic # 1 Polarization: -15.27 SS G_CDS: -0.43 Total: -15.70 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 3.82 Total: 4.31 kcal Atomic # 7 Polarization: 3.64 SS G_CDS: -2.32 Total: 1.32 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -2.89 Total: -10.72 kcal Atomic # 14 Polarization: -0.36 SS G_CDS: 2.04 Total: 1.68 kcal Total: -19.33 0.22 -19.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_4549602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.673 kcal (2) G-P(sol) polarization free energy of solvation -19.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds