Wall clock time and date at job start Mon Mar 8 2021 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.46900 * 2 1 4 4 C 1.50693 * 109.47437 * 120.00157 * 2 1 3 5 5 C 1.38244 * 119.97178 * 245.02126 * 4 2 1 6 6 C 1.38290 * 120.11180 * 179.97438 * 5 4 2 7 7 C 1.38115 * 120.05791 * 359.97438 * 6 5 4 8 8 C 1.38754 * 119.94234 * 359.76774 * 7 6 5 9 9 O 1.35904 * 120.05978 * 180.27971 * 8 7 6 10 10 C 1.42903 * 116.99671 * 0.20027 * 9 8 7 11 11 C 1.50698 * 109.47143 * 180.02562 * 10 9 8 12 12 O 1.21280 * 119.99707 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00053 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99778 * 180.02562 * 13 11 10 15 15 H 1.08993 * 112.84954 * 334.66800 * 14 13 11 16 16 C 1.53785 * 113.61037 * 105.86253 * 14 13 11 17 17 C 1.54055 * 86.98415 * 89.15780 * 16 14 13 18 18 H 1.08992 * 113.61472 * 270.88280 * 17 16 14 19 19 C 1.50700 * 113.61797 * 139.97312 * 17 16 14 20 20 C 1.38235 * 120.00082 * 322.23797 * 19 17 16 21 21 C 1.38243 * 120.00006 * 179.76448 * 20 19 17 22 22 C 1.38237 * 119.99731 * 0.48208 * 21 20 19 23 23 C 1.38229 * 119.99969 * 359.78885 * 22 21 20 24 24 C 1.38231 * 119.99893 * 142.50404 * 19 17 16 25 25 C 1.53777 * 113.61009 * 203.46623 * 14 13 11 26 26 C 1.38167 * 119.97449 * 65.00394 * 4 2 1 27 27 H 0.96696 * 114.00334 * 60.00236 * 1 2 3 28 28 H 1.09005 * 109.47470 * 240.00312 * 2 1 3 29 29 H 1.48504 * 110.00094 * 298.68148 * 3 2 1 30 30 H 1.48497 * 109.99794 * 60.00028 * 3 2 1 31 31 H 1.08007 * 119.94618 * 359.97438 * 5 4 2 32 32 H 1.08007 * 119.97167 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.03345 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47603 * 300.00651 * 10 9 8 35 35 H 1.09001 * 109.47062 * 60.00447 * 10 9 8 36 36 H 0.96999 * 119.99859 * 359.97438 * 13 11 10 37 37 H 1.09002 * 113.61245 * 203.66296 * 16 14 13 38 38 H 1.08999 * 113.61899 * 334.56693 * 16 14 13 39 39 H 1.08008 * 120.00077 * 359.97438 * 20 19 17 40 40 H 1.07994 * 120.00034 * 180.25028 * 21 20 19 41 41 H 1.07998 * 119.99726 * 179.76655 * 22 21 20 42 42 H 1.08008 * 119.99950 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.00277 * 0.02562 * 24 19 17 44 44 H 1.08999 * 113.61737 * 25.43896 * 25 14 13 45 45 H 1.09002 * 113.61329 * 156.33625 * 25 14 13 46 46 H 1.08002 * 120.02367 * 359.97073 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6384 -0.0116 2.1910 6 6 3.1003 -0.6605 3.3215 7 6 2.8558 -2.0089 3.4937 8 6 2.1417 -2.7114 2.5335 9 8 1.8948 -4.0370 2.7032 10 6 2.3963 -4.6426 3.8964 11 6 2.0295 -6.1042 3.9104 12 8 1.4009 -6.5804 2.9889 13 7 2.3999 -6.8822 4.9467 14 6 2.0437 -8.3032 4.9599 15 1 1.1577 -8.5230 4.3643 16 6 3.2294 -9.2382 4.6685 17 6 3.4982 -9.2366 6.1855 18 1 4.1608 -8.4347 6.5106 19 6 3.8975 -10.5842 6.7292 20 6 3.3052 -11.7317 6.2359 21 6 3.6750 -12.9682 6.7313 22 6 4.6298 -13.0565 7.7270 23 6 5.2180 -11.9086 8.2242 24 6 4.8520 -10.6725 7.7251 25 6 2.0057 -8.9156 6.3700 26 6 1.6847 -2.0595 1.3976 27 1 -0.3933 0.4416 -0.7650 28 1 1.7924 -0.5138 -0.8900 29 1 1.5878 2.4586 -1.2242 30 1 1.5614 2.4679 1.2085 31 1 2.8303 1.0430 2.0585 32 1 3.6521 -0.1122 4.0708 33 1 3.2163 -2.5152 4.3769 34 1 3.4811 -4.5404 3.9277 35 1 1.9598 -4.1499 4.7652 36 1 2.9030 -6.5014 5.6835 37 1 2.9322 -10.2117 4.2787 38 1 4.0208 -8.7703 4.0830 39 1 2.5560 -11.6625 5.4610 40 1 3.2152 -13.8650 6.3431 41 1 4.9160 -14.0222 8.1166 42 1 5.9638 -11.9775 9.0024 43 1 5.3114 -9.7757 8.1139 44 1 1.8098 -8.1875 7.1571 45 1 1.3745 -9.8011 6.4446 46 1 1.1316 -2.6049 0.6471 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705150_4860298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:04:32 Heat of formation + Delta-G solvation = -13.928102 kcal Electronic energy + Delta-G solvation = -27384.466116 eV Core-core repulsion = 23400.082963 eV Total energy + Delta-G solvation = -3984.383152 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.76977 -41.22885 -40.26818 -39.10190 -38.51836 -37.40818 -34.72659 -32.60915 -32.05231 -31.77090 -31.40525 -29.25165 -26.84931 -26.72331 -25.95513 -23.67046 -23.60649 -22.87885 -22.30123 -21.59317 -20.13805 -19.21403 -18.60105 -18.39014 -17.89706 -17.45277 -17.42479 -17.07975 -16.72653 -16.16029 -16.09986 -15.80060 -15.65398 -15.58328 -15.01818 -14.99253 -14.53910 -14.49944 -14.24635 -14.13393 -14.05221 -13.77549 -13.65713 -13.46262 -13.31286 -13.09374 -12.74955 -12.52684 -12.17229 -12.12518 -12.00162 -11.75042 -11.71133 -11.68603 -11.18666 -11.05805 -10.55414 -10.20238 -9.92089 -9.80554 -9.54352 -9.28967 -4.92021 0.19973 0.38892 0.44025 0.51156 1.26072 1.38823 1.45436 1.61723 1.94331 2.55073 2.63185 2.84257 3.37836 3.44891 3.49183 3.67624 3.72969 3.79189 3.83423 3.93313 4.00180 4.05625 4.08850 4.12949 4.16248 4.25096 4.25485 4.26886 4.31997 4.48246 4.57073 4.63475 4.64767 4.68190 4.75847 4.82338 4.96093 4.97391 4.99671 5.12497 5.14440 5.19297 5.23061 5.36157 5.46117 5.48828 5.59992 5.65608 5.68308 5.75527 6.13833 6.26052 6.44198 6.55196 7.09136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.098 4.098 3 Si 0.783 3.217 4 C -0.048 4.048 5 C -0.161 4.161 6 C -0.070 4.070 7 C -0.201 4.201 8 C 0.114 3.886 9 O -0.323 6.323 10 C 0.038 3.962 11 C 0.515 3.485 12 O -0.573 6.573 13 N -0.691 5.691 14 C 0.116 3.884 15 H 0.081 0.919 16 C -0.144 4.144 17 C -0.063 4.063 18 H 0.116 0.884 19 C -0.079 4.079 20 C -0.129 4.129 21 C -0.132 4.132 22 C -0.139 4.139 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.150 4.150 27 H 0.395 0.605 28 H 0.089 0.911 29 H -0.287 1.287 30 H -0.292 1.292 31 H 0.145 0.855 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.422 0.578 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.648 2.198 5.469 8.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.206 4.206 3 Si 0.687 3.313 4 C -0.048 4.048 5 C -0.178 4.178 6 C -0.088 4.088 7 C -0.220 4.220 8 C 0.069 3.931 9 O -0.236 6.236 10 C -0.040 4.040 11 C 0.301 3.699 12 O -0.451 6.451 13 N -0.345 5.345 14 C 0.010 3.990 15 H 0.099 0.901 16 C -0.182 4.182 17 C -0.082 4.082 18 H 0.134 0.866 19 C -0.079 4.079 20 C -0.147 4.147 21 C -0.150 4.150 22 C -0.157 4.157 23 C -0.149 4.149 24 C -0.144 4.144 25 C -0.161 4.161 26 C -0.169 4.169 27 H 0.245 0.755 28 H 0.107 0.893 29 H -0.214 1.214 30 H -0.220 1.220 31 H 0.162 0.838 32 H 0.182 0.818 33 H 0.181 0.819 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.260 0.740 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.156 0.844 44 H 0.111 0.889 45 H 0.115 0.885 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.971 2.228 5.231 8.245 hybrid contribution -1.192 -0.496 -0.424 1.359 sum 4.779 1.732 4.808 6.996 Atomic orbital electron populations 1.86555 1.18661 1.80895 1.50955 1.25254 0.84088 1.12932 0.98304 0.93927 0.90022 0.70901 0.76487 1.19259 0.97288 0.92433 0.95799 1.21213 1.01197 1.00607 0.94806 1.21322 0.96907 0.93605 0.96944 1.21640 1.03433 0.96284 1.00616 1.19169 0.96260 0.82386 0.95314 1.86120 1.74701 1.20923 1.41895 1.22737 1.02813 0.89916 0.88517 1.20578 0.78663 0.88558 0.82072 1.90767 1.41004 1.75963 1.37363 1.45326 1.57408 1.08836 1.22895 1.21844 0.98251 0.79862 0.99039 0.90101 1.23602 0.98222 1.00220 0.96205 1.21649 0.97113 0.94391 0.95008 0.86599 1.19876 0.96529 0.95003 0.96521 1.21229 1.00551 0.92343 1.00564 1.21417 0.98001 0.98267 0.97322 1.21442 0.97338 0.99371 0.97512 1.21456 1.00237 0.92787 1.00386 1.21341 0.97682 0.98389 0.96951 1.23349 0.95759 1.01545 0.95404 1.20308 1.04095 0.94628 0.97898 0.75491 0.89289 1.21435 1.21980 0.83772 0.81772 0.81850 0.85314 0.85682 0.73962 0.88935 0.91272 0.85321 0.85157 0.85128 0.84781 0.84444 0.88908 0.88486 0.86898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.18 12.81 -148.98 -1.91 -5.09 16 2 C -0.10 -0.22 2.79 71.23 0.20 -0.02 16 3 Si 0.78 -1.18 29.85 68.60 2.05 0.87 16 4 C -0.05 -0.24 5.38 -19.88 -0.11 -0.35 16 5 C -0.16 -0.12 8.67 22.28 0.19 0.07 16 6 C -0.07 0.17 10.04 22.25 0.22 0.39 16 7 C -0.20 0.28 9.04 22.36 0.20 0.48 16 8 C 0.11 0.66 6.69 22.51 0.15 0.81 16 9 O -0.32 -2.59 9.67 -73.43 -0.71 -3.30 16 10 C 0.04 -0.09 5.22 71.24 0.37 0.28 16 11 C 0.51 1.77 7.91 87.66 0.69 2.47 16 12 O -0.57 -9.02 16.12 16.01 0.26 -8.76 16 13 N -0.69 2.81 5.26 -440.04 -2.32 0.50 16 14 C 0.12 -0.18 4.30 45.52 0.20 0.01 16 15 H 0.08 0.33 7.50 -2.39 -0.02 0.31 16 16 C -0.14 0.30 7.27 31.22 0.23 0.52 16 17 C -0.06 0.32 3.87 -10.92 -0.04 0.28 16 18 H 0.12 -1.00 8.10 -2.39 -0.02 -1.02 16 19 C -0.08 0.07 5.29 -19.87 -0.11 -0.03 16 20 C -0.13 -0.06 8.60 22.27 0.19 0.13 16 21 C -0.13 -0.15 10.05 22.27 0.22 0.07 16 22 C -0.14 -0.14 10.05 22.27 0.22 0.09 16 23 C -0.13 -0.02 10.05 22.27 0.22 0.21 16 24 C -0.13 0.11 9.71 22.27 0.22 0.33 16 25 C -0.12 0.67 7.29 31.12 0.23 0.89 16 26 C -0.15 -1.30 9.62 22.37 0.22 -1.08 16 27 H 0.39 -1.12 8.74 -74.06 -0.65 -1.77 16 28 H 0.09 -0.06 7.96 -2.38 -0.02 -0.08 16 29 H -0.29 -0.75 7.11 99.48 0.71 -0.04 16 30 H -0.29 -1.36 7.05 99.48 0.70 -0.66 16 31 H 0.15 -0.46 4.86 -2.91 -0.01 -0.47 16 32 H 0.16 -1.50 8.06 -2.91 -0.02 -1.53 16 33 H 0.16 -1.48 6.30 -2.91 -0.02 -1.50 16 34 H 0.13 -1.21 7.65 -2.39 -0.02 -1.23 16 35 H 0.13 -1.09 7.67 -2.39 -0.02 -1.11 16 36 H 0.42 -5.07 8.70 -92.71 -0.81 -5.88 16 37 H 0.09 -0.12 6.33 -2.39 -0.02 -0.13 16 38 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.13 -0.23 6.68 -2.91 -0.02 -0.25 16 40 H 0.13 -0.21 8.06 -2.91 -0.02 -0.24 16 41 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 42 H 0.13 -0.44 8.06 -2.91 -0.02 -0.46 16 43 H 0.14 -0.70 8.06 -2.91 -0.02 -0.73 16 44 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 45 H 0.10 -0.43 7.71 -2.39 -0.02 -0.44 16 46 H 0.11 1.27 8.06 -2.91 -0.02 1.25 16 Total: 0.00 -28.01 382.52 0.69 -27.32 By element: Atomic # 1 Polarization: -16.68 SS G_CDS: -0.40 Total: -17.09 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 3.72 Total: 5.56 kcal Atomic # 7 Polarization: 2.81 SS G_CDS: -2.32 Total: 0.50 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -2.36 Total: -17.15 kcal Atomic # 14 Polarization: -1.18 SS G_CDS: 2.05 Total: 0.87 kcal Total: -28.01 0.69 -27.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_4860298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.388 kcal (2) G-P(sol) polarization free energy of solvation -28.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds