Wall clock time and date at job start Mon Mar 8 2021 02:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.47326 * 2 1 4 4 C 1.50705 * 109.46752 * 119.99931 * 2 1 3 5 5 C 1.35452 * 125.56133 * 244.97622 * 4 2 1 6 6 C 1.39842 * 107.85883 * 179.76331 * 5 4 2 7 7 C 1.37866 * 107.08893 * 0.41284 * 6 5 4 8 8 C 1.46671 * 126.23382 * 179.84821 * 7 6 5 9 9 O 1.21695 * 120.00258 * 359.69476 * 8 7 6 10 10 N 1.34780 * 120.00189 * 179.69305 * 8 7 6 11 11 C 1.46498 * 120.00263 * 180.02562 * 10 8 7 12 12 H 1.09000 * 112.84840 * 336.19443 * 11 10 8 13 13 C 1.53782 * 113.61586 * 107.50385 * 11 10 8 14 14 C 1.53781 * 87.08068 * 89.11305 * 13 11 10 15 15 H 1.09000 * 113.69644 * 270.86938 * 14 13 11 16 16 C 1.50706 * 113.60876 * 139.98324 * 14 13 11 17 17 C 1.38237 * 119.99761 * 142.50819 * 16 14 13 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 14 19 19 C 1.38234 * 120.00220 * 359.94731 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00191 * 322.47921 * 16 14 13 22 22 C 1.53773 * 87.08215 * 25.43451 * 14 13 11 23 23 N 1.35530 * 125.56395 * 64.99926 * 4 2 1 24 24 H 0.96697 * 114.00200 * 300.00656 * 1 2 3 25 25 H 1.08994 * 109.47121 * 239.99829 * 2 1 3 26 26 H 1.48500 * 110.00064 * 299.99748 * 3 2 1 27 27 H 1.48503 * 109.99875 * 61.31709 * 3 2 1 28 28 H 1.07998 * 126.07038 * 0.02562 * 5 4 2 29 29 H 1.08008 * 126.45151 * 180.26468 * 6 5 4 30 30 H 0.97008 * 119.99937 * 0.02562 * 10 8 7 31 31 H 1.09007 * 113.61155 * 334.56808 * 13 11 10 32 32 H 1.08992 * 113.61880 * 203.66780 * 13 11 10 33 33 H 1.08005 * 120.00088 * 359.96779 * 17 16 14 34 34 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 36 36 H 1.07998 * 120.00391 * 179.72199 * 20 19 18 37 37 H 1.07999 * 119.99990 * 0.02562 * 21 16 14 38 38 H 1.09005 * 113.61663 * 89.11362 * 22 14 13 39 39 H 1.08995 * 113.61810 * 219.93080 * 22 14 13 40 40 H 0.97002 * 125.67946 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6332 -0.1394 2.2385 6 6 2.9030 -1.1299 3.1881 7 6 2.3536 -2.3033 2.7168 8 6 2.3944 -3.6089 3.3839 9 8 2.9584 -3.7272 4.4558 10 7 1.8074 -4.6777 2.8097 11 6 1.8477 -5.9817 3.4762 12 1 2.6826 -6.0765 4.1705 13 6 0.4966 -6.4110 4.0721 14 6 0.1904 -7.0567 2.7104 15 1 -0.2930 -6.3816 2.0043 16 6 -0.5065 -8.3887 2.8172 17 6 -1.4865 -8.7311 1.9044 18 6 -2.1253 -9.9531 2.0020 19 6 -1.7834 -10.8331 3.0117 20 6 -0.8068 -10.4887 3.9273 21 6 -0.1652 -9.2683 3.8275 22 6 1.7109 -7.1712 2.5112 23 7 1.7547 -2.0250 1.5091 24 1 -0.3933 0.4418 0.7650 25 1 1.7923 -0.5138 -0.8899 26 1 1.5616 2.4679 -1.2085 27 1 1.5879 2.4585 1.2242 28 1 2.9283 0.8977 2.3000 29 1 3.4423 -1.0005 4.1149 30 1 1.3582 -4.5835 1.9551 31 1 -0.1585 -5.5746 4.3159 32 1 0.5871 -7.1302 4.8860 33 1 -1.7532 -8.0438 1.1150 34 1 -2.8913 -10.2204 1.2891 35 1 -2.2823 -11.7880 3.0876 36 1 -0.5427 -11.1744 4.7189 37 1 0.6005 -9.0008 4.5406 38 1 2.1334 -8.0984 2.8984 39 1 2.0359 -6.9501 1.4946 40 1 1.2844 -2.6635 0.9504 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705150_6580494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:05:04 Heat of formation + Delta-G solvation = 33.071060 kcal Electronic energy + Delta-G solvation = -22978.040732 eV Core-core repulsion = 19532.715656 eV Total energy + Delta-G solvation = -3445.325075 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.57115 -41.43978 -40.09376 -38.70459 -37.81588 -34.80009 -32.30508 -31.90397 -31.71909 -31.11786 -27.24802 -26.76447 -25.91322 -23.83024 -23.31320 -22.43802 -21.59949 -21.19041 -20.20269 -19.86494 -18.32981 -17.92082 -17.15328 -16.70673 -16.45057 -16.25147 -16.06117 -15.96316 -15.32328 -15.21885 -15.05030 -14.73658 -14.47905 -14.35834 -14.23186 -14.08314 -13.98364 -13.64877 -13.51326 -13.14870 -12.77343 -12.33967 -12.20330 -11.90505 -11.79595 -11.74459 -11.38987 -11.22454 -10.83486 -10.29845 -10.08524 -9.83714 -9.57928 -9.30463 -4.82460 0.27125 0.41008 0.48104 1.22735 1.53356 1.69988 1.86420 1.95914 2.20646 2.23818 2.81207 3.35423 3.40190 3.58702 3.63515 3.66734 3.77538 3.89642 4.02691 4.13297 4.20988 4.24725 4.28000 4.30588 4.50457 4.53891 4.59449 4.64915 4.72255 4.77847 4.90237 4.95172 4.95844 5.06871 5.10229 5.11495 5.16020 5.43160 5.56579 5.58169 5.62685 5.71515 5.77927 6.10644 6.25351 6.40144 6.43024 7.00072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.063 4.063 3 Si 0.794 3.206 4 C 0.034 3.966 5 C -0.205 4.205 6 C -0.117 4.117 7 C -0.063 4.063 8 C 0.591 3.409 9 O -0.569 6.569 10 N -0.699 5.699 11 C 0.116 3.884 12 H 0.091 0.909 13 C -0.143 4.143 14 C -0.066 4.066 15 H 0.108 0.892 16 C -0.080 4.080 17 C -0.129 4.129 18 C -0.131 4.131 19 C -0.138 4.138 20 C -0.130 4.130 21 C -0.127 4.127 22 C -0.123 4.123 23 N -0.512 5.512 24 H 0.390 0.610 25 H 0.136 0.864 26 H -0.299 1.299 27 H -0.282 1.282 28 H 0.166 0.834 29 H 0.146 0.854 30 H 0.409 0.591 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 -0.357 -4.446 4.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.171 4.171 3 Si 0.698 3.302 4 C -0.085 4.085 5 C -0.229 4.229 6 C -0.143 4.143 7 C -0.177 4.177 8 C 0.380 3.620 9 O -0.448 6.448 10 N -0.350 5.350 11 C 0.011 3.989 12 H 0.109 0.891 13 C -0.181 4.181 14 C -0.084 4.084 15 H 0.126 0.874 16 C -0.080 4.080 17 C -0.146 4.146 18 C -0.149 4.149 19 C -0.156 4.156 20 C -0.148 4.148 21 C -0.145 4.145 22 C -0.161 4.161 23 N -0.109 5.109 24 H 0.239 0.761 25 H 0.153 0.847 26 H -0.227 1.227 27 H -0.209 1.209 28 H 0.184 0.816 29 H 0.163 0.837 30 H 0.246 0.754 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -0.025 -0.110 -4.301 4.303 hybrid contribution -1.630 -0.626 0.166 1.754 sum -1.655 -0.736 -4.136 4.515 Atomic orbital electron populations 1.86579 1.18115 1.80515 1.50446 1.25065 0.83593 1.12171 0.96319 0.93281 0.90214 0.70169 0.76582 1.21263 1.03695 0.84151 0.99436 1.20948 1.06175 1.00876 0.94938 1.21496 1.01350 0.90952 1.00549 1.20260 1.10972 0.95253 0.91235 1.17236 0.77756 0.82929 0.84065 1.90848 1.46066 1.84990 1.22858 1.45423 1.56782 1.08088 1.24696 1.21886 0.98855 0.82036 0.96140 0.89125 1.23557 0.96570 1.00621 0.97354 1.21577 0.95239 0.93356 0.98207 0.87437 1.19860 0.96698 0.95944 0.95484 1.21322 0.96554 0.97302 0.99464 1.21443 1.00223 0.94404 0.98804 1.21453 0.98224 1.00391 0.95508 1.21435 0.96684 0.97163 0.99530 1.21236 1.00550 0.94123 0.98619 1.23365 0.94632 0.97674 1.00428 1.41894 1.42499 1.09624 1.16898 0.76064 0.84683 1.22689 1.20855 0.81637 0.83652 0.75448 0.91633 0.88364 0.84845 0.84849 0.84999 0.84889 0.85013 0.88004 0.89386 0.73261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.34 12.88 -148.98 -1.92 -0.58 16 2 C -0.06 0.33 3.08 71.24 0.22 0.55 16 3 Si 0.79 -4.26 30.56 68.60 2.10 -2.17 16 4 C 0.03 -0.10 6.46 41.35 0.27 0.17 16 5 C -0.21 0.17 9.32 22.01 0.21 0.38 16 6 C -0.12 -0.44 10.65 22.57 0.24 -0.20 16 7 C -0.06 -0.18 7.06 40.34 0.28 0.11 16 8 C 0.59 3.37 7.79 86.44 0.67 4.05 16 9 O -0.57 -8.21 16.48 -4.33 -0.07 -8.28 16 10 N -0.70 0.96 5.26 -444.00 -2.33 -1.38 16 11 C 0.12 -0.09 4.33 45.52 0.20 0.10 16 12 H 0.09 0.32 7.46 -2.39 -0.02 0.30 16 13 C -0.14 0.19 7.25 31.12 0.23 0.42 16 14 C -0.07 0.24 3.86 -11.01 -0.04 0.20 16 15 H 0.11 -0.67 8.09 -2.39 -0.02 -0.69 16 16 C -0.08 0.01 5.29 -19.86 -0.11 -0.10 16 17 C -0.13 -0.03 9.71 22.27 0.22 0.19 16 18 C -0.13 -0.11 10.05 22.27 0.22 0.11 16 19 C -0.14 -0.17 10.05 22.27 0.22 0.05 16 20 C -0.13 -0.14 10.05 22.27 0.22 0.08 16 21 C -0.13 -0.07 8.61 22.27 0.19 0.12 16 22 C -0.12 0.56 7.29 31.12 0.23 0.78 16 23 N -0.51 1.62 5.99 -171.94 -1.03 0.59 16 24 H 0.39 -2.69 8.70 -74.06 -0.64 -3.33 16 25 H 0.14 -1.11 7.96 -2.39 -0.02 -1.13 16 26 H -0.30 -0.63 7.11 99.48 0.71 0.08 16 27 H -0.28 0.20 7.11 99.48 0.71 0.91 16 28 H 0.17 -0.78 6.19 -2.91 -0.02 -0.79 16 29 H 0.15 0.65 8.06 -2.91 -0.02 0.63 16 30 H 0.41 -3.06 7.83 -92.70 -0.73 -3.78 16 31 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 32 H 0.10 -0.14 6.31 -2.39 -0.02 -0.16 16 33 H 0.13 -0.46 8.05 -2.91 -0.02 -0.48 16 34 H 0.13 -0.33 8.06 -2.91 -0.02 -0.35 16 35 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 36 H 0.13 -0.27 8.06 -2.91 -0.02 -0.29 16 37 H 0.13 -0.28 6.66 -2.91 -0.02 -0.30 16 38 H 0.10 -0.44 7.72 -2.38 -0.02 -0.46 16 39 H 0.09 -0.57 8.14 -2.39 -0.02 -0.58 16 40 H 0.43 -3.60 8.19 -92.71 -0.76 -4.36 16 Total: 0.00 -19.05 337.91 -0.79 -19.84 By element: Atomic # 1 Polarization: -14.05 SS G_CDS: -1.00 Total: -15.05 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 3.47 Total: 7.02 kcal Atomic # 7 Polarization: 2.58 SS G_CDS: -3.37 Total: -0.79 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -1.99 Total: -8.86 kcal Atomic # 14 Polarization: -4.26 SS G_CDS: 2.10 Total: -2.17 kcal Total: -19.05 -0.79 -19.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_6580494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.909 kcal (2) G-P(sol) polarization free energy of solvation -19.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds