Wall clock time and date at job start Mon Mar 8 2021 02:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50699 * 109.46830 * 240.00466 * 2 1 3 5 5 C 1.32771 * 124.71210 * 299.72598 * 4 2 1 6 6 C 1.44426 * 113.08172 * 179.88099 * 5 4 2 7 7 C 1.47191 * 123.45998 * 180.20371 * 6 5 4 8 8 O 1.21633 * 120.00075 * 0.23315 * 7 6 5 9 9 N 1.34779 * 120.00075 * 180.23569 * 7 6 5 10 10 C 1.46504 * 120.00079 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.84758 * 23.80790 * 10 9 7 12 12 C 1.53781 * 113.61180 * 154.99902 * 10 9 7 13 13 C 1.53784 * 87.07759 * 89.12345 * 12 10 9 14 14 H 1.09005 * 113.60964 * 270.79969 * 13 12 10 15 15 C 1.50698 * 113.61651 * 139.98084 * 13 12 10 16 16 C 1.38229 * 119.99823 * 299.72753 * 15 13 12 17 17 C 1.38235 * 119.99948 * 179.80922 * 16 15 13 18 18 C 1.38240 * 119.99979 * 0.39464 * 17 16 15 19 19 C 1.38228 * 119.99865 * 359.85543 * 18 17 16 20 20 C 1.38234 * 120.00010 * 119.99550 * 15 13 12 21 21 C 1.53774 * 113.61780 * 252.50330 * 10 9 7 22 22 C 1.36010 * 113.08023 * 0.39629 * 6 5 4 23 23 S 1.70444 * 110.81510 * 359.78461 * 22 6 5 24 24 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 25 25 H 1.08991 * 109.47274 * 120.00272 * 2 1 3 26 26 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 27 27 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 28 28 H 1.07993 * 123.45841 * 0.02586 * 5 4 2 29 29 H 0.96997 * 120.00301 * 0.02562 * 9 7 6 30 30 H 1.09002 * 113.61035 * 203.66507 * 12 10 9 31 31 H 1.08997 * 113.61542 * 334.48619 * 12 10 9 32 32 H 1.08003 * 120.00517 * 359.97438 * 16 15 13 33 33 H 1.08001 * 120.00410 * 180.22503 * 17 16 15 34 34 H 1.08005 * 119.99841 * 179.83495 * 18 17 16 35 35 H 1.08006 * 120.00398 * 179.97438 * 19 18 17 36 36 H 1.08000 * 120.00254 * 359.97438 * 20 15 13 37 37 H 1.08995 * 113.61769 * 25.42576 * 21 10 9 38 38 H 1.09002 * 113.61843 * 156.33790 * 21 10 9 39 39 H 1.07997 * 124.59158 * 179.79051 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.6730 -1.9777 -1.5303 6 6 2.2783 -2.4006 -2.7715 7 6 2.1359 -3.7580 -3.3227 8 8 1.4770 -4.5898 -2.7282 9 7 2.7357 -4.0792 -4.4862 10 6 2.5944 -5.4304 -5.0346 11 1 1.6992 -5.9402 -4.6784 12 6 2.7761 -5.4981 -6.5601 13 6 4.2763 -5.7059 -6.2931 14 1 4.8415 -4.7760 -6.2306 15 6 4.9171 -6.7200 -7.2053 16 6 4.4639 -8.0259 -7.2136 17 6 5.0490 -8.9552 -8.0532 18 6 6.0927 -8.5805 -8.8786 19 6 6.5493 -7.2759 -8.8665 20 6 5.9616 -6.3456 -8.0297 21 6 3.8732 -6.2772 -4.9234 22 6 2.9969 -1.4171 -3.3766 23 16 2.9449 0.0207 -2.4628 24 1 -0.3934 0.4418 -0.7650 25 1 1.7923 -0.5138 0.8899 26 1 1.5616 2.4678 1.2086 27 1 3.5346 1.7703 -0.0322 28 1 1.0702 -2.6251 -0.9108 29 1 3.2615 -3.4160 -4.9601 30 1 2.2911 -6.3593 -7.0197 31 1 2.5474 -4.5618 -7.0691 32 1 3.6509 -8.3196 -6.5661 33 1 4.6926 -9.9746 -8.0624 34 1 6.5516 -9.3072 -9.5326 35 1 7.3650 -6.9831 -9.5110 36 1 6.3183 -5.3262 -8.0203 37 1 4.5315 -5.9693 -4.1111 38 1 3.6881 -7.3513 -4.9357 39 1 3.5284 -1.5317 -4.3097 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9705150_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:05:18 Heat of formation + Delta-G solvation = 18.339977 kcal Electronic energy + Delta-G solvation = -22535.151332 eV Core-core repulsion = 19115.539486 eV Total energy + Delta-G solvation = -3419.611846 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65397 -40.45733 -39.11410 -38.46845 -37.06159 -34.62673 -32.16463 -31.82769 -31.24461 -27.02711 -26.80740 -26.68205 -25.25143 -23.56577 -22.55098 -22.10965 -20.56185 -20.22404 -18.92892 -18.32970 -17.85948 -17.61490 -16.93198 -16.39054 -16.18529 -16.16566 -15.88949 -15.60328 -15.23896 -15.06537 -14.70933 -14.36873 -14.31403 -14.14599 -14.09040 -13.73289 -13.64443 -13.50602 -13.08419 -12.78957 -12.68920 -12.28534 -12.22382 -11.93935 -11.79895 -11.76084 -11.23131 -10.91755 -10.64713 -10.15346 -10.02572 -9.83105 -9.58347 -9.53100 -5.23042 -0.40061 0.29751 0.41342 0.48662 0.64874 0.88750 1.15561 1.52244 1.84025 2.03556 2.33166 2.81381 3.29454 3.37445 3.54266 3.61529 3.65069 3.80133 3.84454 3.93642 3.98447 4.09245 4.16169 4.22734 4.24338 4.37731 4.51859 4.57160 4.63381 4.66288 4.67748 4.77099 4.88882 4.93835 5.00441 5.07340 5.09141 5.13217 5.19768 5.50545 5.56548 5.62683 5.70776 6.08570 6.42166 6.44517 7.19192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.026 4.026 3 Si 0.654 3.346 4 C -0.244 4.244 5 C -0.053 4.053 6 C -0.155 4.155 7 C 0.581 3.419 8 O -0.529 6.529 9 N -0.709 5.709 10 C 0.120 3.880 11 H 0.107 0.893 12 C -0.135 4.135 13 C -0.074 4.074 14 H 0.096 0.904 15 C -0.072 4.072 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.124 4.124 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.144 4.144 22 C -0.206 4.206 23 S 0.197 5.803 24 H 0.381 0.619 25 H 0.124 0.876 26 H -0.232 1.232 27 H -0.236 1.236 28 H 0.157 0.843 29 H 0.399 0.601 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.005 3.732 -4.470 6.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.139 4.139 3 Si 0.553 3.447 4 C -0.360 4.360 5 C -0.082 4.082 6 C -0.173 4.173 7 C 0.367 3.633 8 O -0.406 6.406 9 N -0.360 5.360 10 C 0.015 3.985 11 H 0.125 0.875 12 C -0.173 4.173 13 C -0.092 4.092 14 H 0.114 0.886 15 C -0.072 4.072 16 C -0.135 4.135 17 C -0.135 4.135 18 C -0.142 4.142 19 C -0.136 4.136 20 C -0.135 4.135 21 C -0.183 4.183 22 C -0.344 4.344 23 S 0.463 5.537 24 H 0.229 0.771 25 H 0.141 0.859 26 H -0.155 1.155 27 H -0.161 1.161 28 H 0.174 0.826 29 H 0.234 0.766 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.718 4.868 -3.235 6.446 hybrid contribution -0.046 -1.824 -0.195 1.835 sum 2.672 3.044 -3.430 5.308 Atomic orbital electron populations 1.86545 1.16520 1.81661 1.49145 1.24446 0.85300 1.09071 0.95096 0.95107 0.82053 0.77520 0.90014 1.24807 1.08622 0.99140 1.03464 1.21049 0.98127 0.94353 0.94656 1.20239 1.04483 0.94667 0.97946 1.17608 0.78794 0.86553 0.80376 1.90828 1.40044 1.50405 1.59277 1.45502 1.53431 1.13412 1.23695 1.21868 0.99625 0.82997 0.94037 0.87457 1.23427 0.95180 1.03521 0.95150 1.21592 0.95450 0.97551 0.94590 0.88615 1.19677 0.96185 0.94289 0.97077 1.21028 1.00321 0.92854 0.99301 1.21188 0.96503 0.99604 0.96223 1.21205 0.97237 0.96418 0.99350 1.21185 0.99914 0.93561 0.98957 1.21064 0.96341 0.99565 0.96551 1.23574 0.97402 1.00645 0.96634 1.25787 1.04428 0.99012 1.05220 1.83094 1.46680 1.11384 1.12503 0.77129 0.85867 1.15497 1.16050 0.82560 0.76603 0.88226 0.90478 0.85924 0.85973 0.86070 0.86038 0.86211 0.90695 0.88514 0.81183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.01 12.85 -35.23 -0.45 -0.46 16 2 C -0.03 0.02 2.95 36.01 0.11 0.12 16 3 Si 0.65 -1.11 30.91 -169.99 -5.25 -6.36 16 4 C -0.24 0.06 5.68 -36.18 -0.21 -0.15 16 5 C -0.05 -0.08 9.91 -39.02 -0.39 -0.47 16 6 C -0.16 -0.16 5.98 -104.63 -0.63 -0.78 16 7 C 0.58 1.51 7.79 -12.62 -0.10 1.41 16 8 O -0.53 -3.52 16.39 5.25 0.09 -3.43 16 9 N -0.71 0.36 5.23 -54.16 -0.28 0.08 16 10 C 0.12 -0.05 4.32 -67.12 -0.29 -0.34 16 11 H 0.11 0.14 7.46 -51.93 -0.39 -0.24 16 12 C -0.13 0.25 7.29 -25.92 -0.19 0.06 16 13 C -0.07 0.11 3.86 -90.96 -0.35 -0.24 16 14 H 0.10 -0.24 8.09 -51.93 -0.42 -0.66 16 15 C -0.07 -0.01 5.29 -104.63 -0.55 -0.56 16 16 C -0.12 -0.03 8.62 -39.59 -0.34 -0.37 16 17 C -0.12 -0.06 10.05 -39.58 -0.40 -0.45 16 18 C -0.12 -0.07 10.05 -39.58 -0.40 -0.47 16 19 C -0.12 -0.05 10.05 -39.58 -0.40 -0.45 16 20 C -0.12 -0.03 9.71 -39.58 -0.38 -0.42 16 21 C -0.14 0.10 7.25 -25.92 -0.19 -0.09 16 22 C -0.21 0.35 10.38 29.93 0.31 0.66 16 23 S 0.20 -0.39 20.18 -107.50 -2.17 -2.56 16 24 H 0.38 -1.49 8.70 45.56 0.40 -1.09 16 25 H 0.12 -0.04 7.96 -51.93 -0.41 -0.45 16 26 H -0.23 -0.27 7.11 56.52 0.40 0.13 16 27 H -0.24 -0.03 7.11 56.52 0.40 0.37 16 28 H 0.16 0.42 8.06 -52.49 -0.42 -0.01 16 29 H 0.40 -1.29 7.20 -40.82 -0.29 -1.58 16 30 H 0.10 -0.18 7.73 -51.93 -0.40 -0.58 16 31 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 32 H 0.12 -0.13 6.64 -52.48 -0.35 -0.48 16 33 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 34 H 0.12 -0.12 8.06 -52.48 -0.42 -0.54 16 35 H 0.12 -0.14 8.06 -52.48 -0.42 -0.56 16 36 H 0.12 -0.16 8.05 -52.49 -0.42 -0.58 16 37 H 0.07 0.02 8.14 -51.93 -0.42 -0.41 16 38 H 0.10 -0.08 6.30 -51.93 -0.33 -0.41 16 39 H 0.17 -0.79 7.01 -52.49 -0.37 -1.16 16 LS Contribution 342.63 15.07 5.16 5.16 Total: 0.00 -7.50 342.63 -12.02 -19.52 By element: Atomic # 1 Polarization: -4.70 SS G_CDS: -4.72 Total: -9.43 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -4.39 Total: -2.53 kcal Atomic # 7 Polarization: 0.36 SS G_CDS: -0.28 Total: 0.08 kcal Atomic # 8 Polarization: -3.52 SS G_CDS: -0.37 Total: -3.89 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: -5.25 Total: -6.36 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -2.17 Total: -2.56 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -7.50 -12.02 -19.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.863 kcal (2) G-P(sol) polarization free energy of solvation -7.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds