Wall clock time and date at job start Mon Mar 8 2021 02:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37938 * 120.07686 * 2 1 4 4 C 1.38378 * 120.14054 * 180.28046 * 3 2 1 5 5 C 1.50708 * 119.85017 * 179.72104 * 4 3 2 6 6 C 1.38336 * 120.29813 * 359.74507 * 4 3 2 7 7 C 1.50700 * 119.92774 * 179.97438 * 6 4 3 8 8 O 1.42906 * 109.46800 * 74.97754 * 7 6 4 9 9 Si 1.86300 * 109.46868 * 194.97602 * 7 6 4 10 10 C 1.37978 * 120.14377 * 359.97241 * 6 4 3 11 11 C 1.39554 * 119.85172 * 0.03132 * 10 6 4 12 12 C 1.47843 * 120.14602 * 179.97438 * 11 10 6 13 13 O 1.21554 * 120.00266 * 173.75419 * 12 11 10 14 14 N 1.34777 * 119.99808 * 353.74781 * 12 11 10 15 15 C 1.46502 * 119.99994 * 179.97438 * 14 12 11 16 16 H 1.08998 * 112.90747 * 23.75394 * 15 14 12 17 17 C 1.53787 * 113.61234 * 155.00583 * 15 14 12 18 18 C 1.53783 * 87.17399 * 89.15827 * 17 15 14 19 19 H 1.08997 * 113.61406 * 270.84461 * 18 17 15 20 20 C 1.50696 * 113.61454 * 140.01975 * 18 17 15 21 21 C 1.38239 * 120.00342 * 299.73309 * 20 18 17 22 22 C 1.38233 * 120.00083 * 179.76479 * 21 20 18 23 23 C 1.38234 * 120.00155 * 0.48190 * 22 21 20 24 24 C 1.38235 * 119.99630 * 359.79028 * 23 22 21 25 25 C 1.38237 * 120.00499 * 359.95876 * 24 23 22 26 26 C 1.53786 * 87.08054 * 25.38981 * 18 17 15 27 27 H 1.09004 * 109.46930 * 263.66999 * 1 2 3 28 28 H 1.09004 * 109.47378 * 23.65927 * 1 2 3 29 29 H 1.08994 * 109.47796 * 143.66724 * 1 2 3 30 30 H 1.08001 * 119.92403 * 0.02562 * 3 2 1 31 31 H 1.08999 * 109.47452 * 270.02436 * 5 4 3 32 32 H 1.09001 * 109.47084 * 30.02346 * 5 4 3 33 33 H 1.08992 * 109.46904 * 150.01858 * 5 4 3 34 34 H 1.08997 * 109.47117 * 314.97778 * 7 6 4 35 35 H 0.96695 * 113.99917 * 60.00591 * 8 7 6 36 36 H 1.48496 * 109.99987 * 58.68477 * 9 7 6 37 37 H 1.48498 * 109.99745 * 180.02562 * 9 7 6 38 38 H 1.07993 * 120.07550 * 180.02562 * 10 6 4 39 39 H 0.97005 * 120.00049 * 0.02562 * 14 12 11 40 40 H 1.09002 * 113.61215 * 334.56737 * 17 15 14 41 41 H 1.08996 * 113.61356 * 203.74726 * 17 15 14 42 42 H 1.07999 * 119.99390 * 359.97438 * 21 20 18 43 43 H 1.07999 * 119.99931 * 180.24593 * 22 21 20 44 44 H 1.07998 * 120.00116 * 179.76980 * 23 22 21 45 45 H 1.08001 * 120.00043 * 179.97438 * 24 23 22 46 46 H 1.07999 * 120.00225 * 180.02562 * 25 24 23 47 47 H 1.08999 * 113.61361 * 89.11594 * 26 18 17 48 48 H 1.08999 * 113.61344 * 219.93174 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1937 0.0000 4 6 3.5820 1.1952 -0.0059 5 6 4.3307 2.5032 -0.0122 6 6 4.2813 0.0016 -0.0064 7 6 5.7882 0.0130 -0.0134 8 8 6.2678 0.3687 1.2849 9 14 6.4199 -1.6801 -0.4665 10 6 3.6020 -1.1994 -0.0006 11 6 2.2065 -1.2081 0.0053 12 6 1.4720 -2.4912 0.0110 13 8 0.2624 -2.4986 0.1306 14 7 2.1437 -3.6527 -0.1166 15 6 1.4160 -4.9242 -0.1103 16 1 0.3728 -4.8174 -0.4078 17 6 2.1523 -6.0589 -0.8421 18 6 2.8303 -6.3816 0.5000 19 1 3.7590 -5.8347 0.6626 20 6 2.9660 -7.8583 0.7681 21 6 1.8381 -8.6542 0.8405 22 6 1.9629 -10.0096 1.0816 23 6 3.2150 -10.5674 1.2602 24 6 4.3426 -9.7705 1.1934 25 6 4.2182 -8.4160 0.9471 26 6 1.6101 -5.7395 1.1811 27 1 -0.3633 -0.1133 1.0214 28 1 -0.3634 0.9413 -0.4124 29 1 -0.3634 -0.8278 -0.6088 30 1 1.6583 2.1290 0.0004 31 1 4.5065 2.8163 -1.0413 32 1 3.7411 3.2618 0.5027 33 1 5.2858 2.3775 0.4976 34 1 6.1427 0.7405 -0.7436 35 1 5.9904 -0.2365 1.9861 36 1 5.9022 -2.0750 -1.8011 37 1 7.9048 -1.6822 -0.4763 38 1 4.1490 -2.1306 -0.0006 39 1 3.1090 -3.6468 -0.2117 40 1 2.8443 -5.7079 -1.6076 41 1 1.4918 -6.8492 -1.1987 42 1 0.8596 -8.2176 0.7053 43 1 1.0820 -10.6321 1.1342 44 1 3.3123 -11.6258 1.4522 45 1 5.3209 -10.2062 1.3333 46 1 5.0991 -7.7935 0.8945 47 1 0.8003 -6.4419 1.3782 48 1 1.8643 -5.1320 2.0497 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705150_9599494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:05:26 Heat of formation + Delta-G solvation = 13.438229 kcal Electronic energy + Delta-G solvation = -28684.423712 eV Core-core repulsion = 24864.371825 eV Total energy + Delta-G solvation = -3820.051886 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.167 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.88174 -41.00814 -39.91057 -38.69161 -37.56819 -34.97760 -34.37772 -33.18757 -31.81565 -31.49180 -29.30561 -28.55666 -26.65214 -26.12957 -25.51027 -23.80033 -23.50286 -22.85573 -22.13109 -21.04916 -20.00489 -19.09931 -17.99633 -17.47987 -17.37428 -16.66113 -16.38972 -16.27158 -16.21580 -16.04630 -15.83017 -15.52803 -15.03774 -14.97992 -14.71133 -14.61253 -14.43297 -14.21397 -14.08650 -13.99355 -13.90182 -13.46389 -13.35925 -13.06962 -13.04220 -12.81443 -12.66674 -12.63538 -12.49920 -12.16321 -12.08945 -11.88222 -11.66554 -11.63240 -11.12246 -10.73743 -10.42091 -10.14897 -9.90118 -9.76672 -9.61183 -9.49620 -5.07013 -0.26125 0.16716 0.48152 0.55209 1.28119 1.61269 1.74021 1.96615 2.03542 2.63876 2.88544 3.45484 3.50053 3.51338 3.62944 3.71997 3.74870 3.78581 3.82142 3.99902 4.11367 4.15077 4.20203 4.22250 4.29881 4.36519 4.46529 4.50897 4.56331 4.62548 4.67315 4.68403 4.72573 4.74545 4.79703 4.81852 4.86839 4.91881 5.00383 5.04826 5.06819 5.14697 5.17991 5.19704 5.23672 5.27707 5.47712 5.49693 5.58934 5.64279 5.69429 5.79589 5.80548 6.17864 6.46745 6.76766 7.15867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.026 4.026 3 C -0.137 4.137 4 C -0.032 4.032 5 C -0.127 4.127 6 C -0.140 4.140 7 C -0.070 4.070 8 O -0.550 6.550 9 Si 0.760 3.240 10 C -0.063 4.063 11 C -0.157 4.157 12 C 0.560 3.440 13 O -0.561 6.561 14 N -0.698 5.698 15 C 0.116 3.884 16 H 0.088 0.912 17 C -0.128 4.128 18 C -0.067 4.067 19 H 0.117 0.883 20 C -0.078 4.078 21 C -0.128 4.128 22 C -0.133 4.133 23 C -0.140 4.140 24 C -0.131 4.131 25 C -0.126 4.126 26 C -0.141 4.141 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.144 0.856 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.395 0.605 36 H -0.278 1.278 37 H -0.295 1.295 38 H 0.153 0.847 39 H 0.412 0.588 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.133 0.867 46 H 0.139 0.861 47 H 0.094 0.906 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 -1.526 0.599 3.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.027 4.027 3 C -0.155 4.155 4 C -0.033 4.033 5 C -0.184 4.184 6 C -0.140 4.140 7 C -0.180 4.180 8 O -0.358 6.358 9 Si 0.665 3.335 10 C -0.081 4.081 11 C -0.160 4.160 12 C 0.349 3.651 13 O -0.441 6.441 14 N -0.350 5.350 15 C 0.011 3.989 16 H 0.106 0.894 17 C -0.166 4.166 18 C -0.085 4.085 19 H 0.135 0.865 20 C -0.078 4.078 21 C -0.146 4.146 22 C -0.151 4.151 23 C -0.158 4.158 24 C -0.149 4.149 25 C -0.144 4.144 26 C -0.179 4.179 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.161 0.839 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.245 0.755 36 H -0.204 1.204 37 H -0.223 1.223 38 H 0.170 0.830 39 H 0.250 0.750 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.147 0.853 45 H 0.151 0.849 46 H 0.157 0.843 47 H 0.112 0.888 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.818 -1.538 -0.215 3.217 hybrid contribution 0.085 0.471 -0.215 0.525 sum 2.902 -1.066 -0.430 3.122 Atomic orbital electron populations 1.21019 0.90139 1.03155 1.03127 1.20222 0.96973 0.91999 0.93475 1.21183 0.93690 0.98020 1.02633 1.20230 0.93475 0.95952 0.93601 1.21008 1.00985 0.93154 1.03207 1.20192 0.96592 0.92789 1.04427 1.25128 0.90943 1.12458 0.89435 1.86477 1.75867 1.56816 1.16644 0.94218 0.77695 0.78383 0.83160 1.21173 0.92336 0.97877 0.96739 1.19660 0.93790 0.92741 1.09857 1.18400 0.86760 0.84270 0.75648 1.90742 1.15161 1.87502 1.50700 1.45495 1.11275 1.04534 1.73648 1.21890 0.96983 0.82315 0.97706 0.89379 1.23386 0.99645 0.97009 0.96551 1.21634 0.99249 0.91150 0.96457 0.86461 1.19878 0.93156 0.95583 0.99149 1.21232 0.99053 0.93804 1.00532 1.21408 0.98094 0.95641 0.99909 1.21433 0.93017 1.00708 1.00631 1.21448 0.99296 0.94398 0.99792 1.21363 0.97671 0.95410 0.99932 1.23565 0.98393 0.98740 0.97241 0.91088 0.90957 0.90369 0.83869 0.90151 0.90413 0.90118 0.87281 0.75515 1.20391 1.22301 0.82982 0.74987 0.89497 0.88404 0.85188 0.85211 0.85273 0.84886 0.84290 0.88792 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 8.73 71.24 0.62 0.08 16 2 C -0.03 -0.10 5.91 -19.61 -0.12 -0.21 16 3 C -0.14 -0.17 9.31 22.23 0.21 0.03 16 4 C -0.03 -0.01 5.89 -19.80 -0.12 -0.12 16 5 C -0.13 0.25 9.31 71.24 0.66 0.91 16 6 C -0.14 0.22 5.25 -19.90 -0.10 0.12 16 7 C -0.07 0.22 1.88 71.24 0.13 0.35 16 8 O -0.55 1.53 11.91 -148.98 -1.78 -0.24 16 9 Si 0.76 -4.00 29.91 68.60 2.05 -1.95 16 10 C -0.06 0.18 8.13 22.53 0.18 0.36 16 11 C -0.16 -0.36 5.87 -20.09 -0.12 -0.47 16 12 C 0.56 2.30 7.70 86.79 0.67 2.97 16 13 O -0.56 -6.22 12.96 -3.89 -0.05 -6.27 16 14 N -0.70 1.66 5.21 -442.61 -2.31 -0.65 16 15 C 0.12 -0.23 4.33 45.58 0.20 -0.04 16 16 H 0.09 0.21 7.46 -2.39 -0.02 0.19 16 17 C -0.13 0.67 7.29 31.12 0.23 0.89 16 18 C -0.07 0.36 3.86 -11.01 -0.04 0.31 16 19 H 0.12 -1.07 8.09 -2.39 -0.02 -1.09 16 20 C -0.08 0.11 5.29 -19.87 -0.11 0.00 16 21 C -0.13 0.02 8.63 22.27 0.19 0.21 16 22 C -0.13 -0.10 10.05 22.27 0.22 0.12 16 23 C -0.14 -0.11 10.05 22.27 0.22 0.11 16 24 C -0.13 0.01 10.05 22.27 0.22 0.23 16 25 C -0.13 0.16 9.71 22.27 0.22 0.38 16 26 C -0.14 0.44 7.26 31.18 0.23 0.67 16 27 H 0.07 0.39 8.14 -2.38 -0.02 0.38 16 28 H 0.07 0.09 8.04 -2.39 -0.02 0.07 16 29 H 0.08 0.66 5.87 -2.39 -0.01 0.65 16 30 H 0.14 -0.26 8.06 -2.91 -0.02 -0.28 16 31 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.08 -0.25 8.08 -2.39 -0.02 -0.27 16 33 H 0.08 -0.05 6.18 -2.39 -0.01 -0.07 16 34 H 0.11 -0.23 7.38 -2.39 -0.02 -0.24 16 35 H 0.39 -4.10 8.70 -74.06 -0.64 -4.74 16 36 H -0.28 0.24 7.11 99.48 0.71 0.95 16 37 H -0.30 -0.75 7.11 99.48 0.71 -0.05 16 38 H 0.15 -1.44 3.52 -2.91 -0.01 -1.45 16 39 H 0.41 -3.45 6.78 -92.70 -0.63 -4.07 16 40 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 41 H 0.10 -0.45 7.73 -2.39 -0.02 -0.47 16 42 H 0.13 -0.34 6.65 -2.91 -0.02 -0.36 16 43 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 44 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 45 H 0.13 -0.44 8.06 -2.91 -0.02 -0.47 16 46 H 0.14 -0.79 8.05 -2.91 -0.02 -0.81 16 47 H 0.09 -0.25 6.31 -2.39 -0.02 -0.27 16 48 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: 0.00 -17.51 382.34 1.28 -16.23 By element: Atomic # 1 Polarization: -13.78 SS G_CDS: -0.24 Total: -14.02 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 3.60 Total: 6.91 kcal Atomic # 7 Polarization: 1.66 SS G_CDS: -2.31 Total: -0.65 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -1.83 Total: -6.51 kcal Atomic # 14 Polarization: -4.00 SS G_CDS: 2.05 Total: -1.95 kcal Total: -17.51 1.28 -16.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_9599494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.668 kcal (2) G-P(sol) polarization free energy of solvation -17.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds