Wall clock time and date at job start Mon Mar 8 2021 02:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42890 * 1 3 3 Si 1.86305 * 109.47250 * 2 1 4 4 C 1.50702 * 109.47409 * 120.00175 * 2 1 3 5 5 C 1.34242 * 126.49878 * 255.31527 * 4 2 1 6 6 N 1.36837 * 109.93297 * 180.16551 * 5 4 2 7 7 C 1.46502 * 125.05902 * 179.81494 * 6 5 4 8 8 C 1.50697 * 109.47010 * 264.70026 * 7 6 5 9 9 O 1.21276 * 120.00284 * 359.97438 * 8 7 6 10 10 N 1.34785 * 119.99668 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99410 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.85531 * 23.79835 * 11 10 8 13 13 C 1.53788 * 113.61257 * 154.99634 * 11 10 8 14 14 C 1.53782 * 87.07916 * 89.10992 * 13 11 10 15 15 H 1.08993 * 113.61864 * 270.79795 * 14 13 11 16 16 C 1.50706 * 113.61271 * 139.97933 * 14 13 11 17 17 C 1.38238 * 119.99758 * 120.00112 * 16 14 13 18 18 C 1.38234 * 119.99693 * 179.97438 * 17 16 14 19 19 C 1.38234 * 120.00240 * 0.02562 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.26327 * 19 18 17 21 21 C 1.38234 * 120.00194 * 300.02438 * 16 14 13 22 22 C 1.53778 * 113.61060 * 252.48997 * 11 10 8 23 23 C 1.37688 * 109.87796 * 359.55592 * 6 5 4 24 24 C 1.39081 * 133.51352 * 180.24634 * 23 6 5 25 25 C 1.37796 * 119.77396 * 180.02562 * 24 23 6 26 26 C 1.38779 * 120.66912 * 359.97438 * 25 24 23 27 27 C 1.36659 * 120.53128 * 0.02562 * 26 25 24 28 28 C 1.39592 * 119.76405 * 359.97438 * 27 26 25 29 29 H 0.96698 * 113.99941 * 299.99588 * 1 2 3 30 30 H 1.09008 * 109.47205 * 240.00090 * 2 1 3 31 31 H 1.48504 * 109.99623 * 300.00282 * 3 2 1 32 32 H 1.48496 * 109.99716 * 61.31848 * 3 2 1 33 33 H 1.07995 * 125.03301 * 0.02562 * 5 4 2 34 34 H 1.08996 * 109.47048 * 144.69311 * 7 6 5 35 35 H 1.09002 * 109.46958 * 24.70063 * 7 6 5 36 36 H 0.96993 * 119.99713 * 359.97438 * 10 8 7 37 37 H 1.08996 * 113.61105 * 334.56740 * 13 11 10 38 38 H 1.08995 * 113.69112 * 203.67083 * 13 11 10 39 39 H 1.08005 * 120.00103 * 0.02562 * 17 16 14 40 40 H 1.07999 * 119.99751 * 179.97438 * 18 17 16 41 41 H 1.08002 * 119.99744 * 179.97438 * 19 18 17 42 42 H 1.07998 * 120.00391 * 179.72199 * 20 19 18 43 43 H 1.07999 * 119.99990 * 359.97438 * 21 16 14 44 44 H 1.09001 * 113.61469 * 156.33921 * 22 11 10 45 45 H 1.09004 * 113.61845 * 25.43614 * 22 11 10 46 46 H 1.07995 * 120.11465 * 0.03581 * 24 23 6 47 47 H 1.08008 * 119.66064 * 179.97438 * 25 24 23 48 48 H 1.08003 * 119.73660 * 180.02562 * 26 25 24 49 49 H 1.08005 * 120.12298 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.4554 -0.1372 2.3254 6 7 2.8028 -1.0991 3.2345 7 6 3.4076 -0.8405 4.5436 8 6 4.9059 -0.9627 4.4377 9 8 5.4181 -1.2392 3.3737 10 7 5.6766 -0.7659 5.5257 11 6 7.1332 -0.8842 5.4226 12 1 7.5004 -0.7218 4.4093 13 6 7.8937 -0.0794 6.4898 14 6 7.8020 -1.3276 7.3835 15 1 6.9020 -1.3600 7.9973 16 6 9.0577 -1.5995 8.1713 17 6 9.0151 -1.6241 9.5528 18 6 10.1667 -1.8741 10.2754 19 6 11.3610 -2.0989 9.6165 20 6 11.4048 -2.0683 8.2352 21 6 10.2521 -1.8238 7.5125 22 6 7.6969 -2.1505 6.0886 23 6 2.4940 -2.3457 2.7383 24 6 2.6294 -3.6362 3.2390 25 6 2.2160 -4.7108 2.4819 26 6 1.6645 -4.5193 1.2229 27 6 1.5222 -3.2601 0.7115 28 6 1.9342 -2.1570 1.4612 29 1 -0.3933 0.4416 0.7651 30 1 1.7923 -0.5139 -0.8901 31 1 1.5613 2.4679 -1.2085 32 1 1.5878 2.4585 1.2242 33 1 2.5858 0.9254 2.4667 34 1 3.0339 -1.5659 5.2662 35 1 3.1475 0.1660 4.8716 36 1 5.2669 -0.5452 6.3767 37 1 7.3349 0.7741 6.8734 38 1 8.9130 0.1770 6.2012 39 1 8.0819 -1.4489 10.0675 40 1 10.1336 -1.8929 11.3547 41 1 12.2608 -2.2937 10.1812 42 1 12.3387 -2.2395 7.7206 43 1 10.2853 -1.8046 6.4332 44 1 8.6624 -2.4610 5.6890 45 1 6.9794 -2.9688 6.1484 46 1 3.0568 -3.7955 4.2179 47 1 2.3224 -5.7122 2.8724 48 1 1.3452 -5.3724 0.6425 49 1 1.0925 -3.1187 -0.2693 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9705150_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:05:31 Heat of formation + Delta-G solvation = 59.165545 kcal Electronic energy + Delta-G solvation = -31160.212016 eV Core-core repulsion = 27020.264823 eV Total energy + Delta-G solvation = -4139.947193 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.162 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.50427 -41.59983 -40.27861 -38.82889 -38.02592 -37.55841 -34.75861 -33.99132 -32.01212 -31.77329 -31.20762 -30.12542 -28.96875 -26.87941 -26.39984 -25.52699 -23.78221 -23.55038 -22.83715 -22.40882 -21.84246 -20.60881 -20.23757 -18.78891 -18.50966 -17.96067 -17.69566 -17.34221 -16.89257 -16.38499 -16.29404 -16.21943 -16.19779 -15.92445 -15.48745 -15.38638 -15.09634 -14.88211 -14.62946 -14.58873 -14.34974 -14.32761 -14.15552 -13.99586 -13.74406 -13.56443 -13.35552 -13.09032 -12.84025 -12.59895 -12.45616 -12.28746 -12.28018 -11.88522 -11.86504 -11.82172 -11.62852 -11.30462 -11.11546 -10.42744 -10.35296 -10.24939 -9.86775 -9.61834 -9.02749 -8.53616 -4.86410 0.27543 0.37420 0.45045 0.79405 1.36167 1.38342 1.40819 1.61872 1.69645 2.02561 2.07817 2.77274 3.11060 3.29695 3.40850 3.45861 3.55648 3.58742 3.61412 3.72834 3.79195 3.79998 3.85738 3.93571 4.05538 4.06193 4.10980 4.19219 4.31477 4.37009 4.45399 4.52027 4.57844 4.59482 4.59958 4.67935 4.72394 4.81028 4.82272 4.85930 4.90437 4.97620 4.99658 5.04639 5.09258 5.25647 5.38627 5.52658 5.59278 5.64638 5.66008 5.80741 5.86279 5.89926 6.04878 6.14033 6.30523 6.36296 6.59600 6.98911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.037 4.037 3 Si 0.682 3.318 4 C -0.193 4.193 5 C 0.066 3.934 6 N -0.466 5.466 7 C 0.091 3.909 8 C 0.494 3.506 9 O -0.509 6.509 10 N -0.712 5.712 11 C 0.120 3.880 12 H 0.106 0.894 13 C -0.134 4.134 14 C -0.073 4.073 15 H 0.096 0.904 16 C -0.073 4.073 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.143 4.143 23 C 0.109 3.891 24 C -0.128 4.128 25 C -0.096 4.096 26 C -0.146 4.146 27 C -0.065 4.065 28 C -0.086 4.086 29 H 0.372 0.628 30 H 0.114 0.886 31 H -0.256 1.256 32 H -0.261 1.261 33 H 0.168 0.832 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.402 0.598 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.114 0.886 47 H 0.125 0.875 48 H 0.123 0.877 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.117 1.854 6.047 6.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.147 4.147 3 Si 0.584 3.416 4 C -0.200 4.200 5 C -0.059 4.059 6 N -0.149 5.149 7 C -0.035 4.035 8 C 0.278 3.722 9 O -0.382 6.382 10 N -0.365 5.365 11 C 0.015 3.985 12 H 0.124 0.876 13 C -0.172 4.172 14 C -0.091 4.091 15 H 0.115 0.885 16 C -0.073 4.073 17 C -0.135 4.135 18 C -0.136 4.136 19 C -0.142 4.142 20 C -0.135 4.135 21 C -0.135 4.135 22 C -0.182 4.182 23 C 0.005 3.995 24 C -0.148 4.148 25 C -0.115 4.115 26 C -0.165 4.165 27 C -0.083 4.083 28 C -0.090 4.090 29 H 0.220 0.780 30 H 0.132 0.868 31 H -0.180 1.180 32 H -0.185 1.185 33 H 0.185 0.815 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.237 0.763 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.114 0.886 45 H 0.092 0.908 46 H 0.132 0.868 47 H 0.143 0.857 48 H 0.141 0.859 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.495 2.274 4.976 6.013 hybrid contribution -1.018 -0.126 1.327 1.678 sum 1.476 2.148 6.303 6.821 Atomic orbital electron populations 1.86604 1.18161 1.79972 1.48952 1.24284 0.83274 1.09823 0.97367 0.95017 0.91791 0.74463 0.80364 1.20582 1.09847 0.92341 0.97245 1.21584 1.00932 0.93991 0.89404 1.43191 1.52471 1.04666 1.14569 1.21578 0.90772 1.05830 0.85292 1.20995 0.89424 0.77390 0.84417 1.90817 1.74481 1.45197 1.27703 1.45629 1.06511 1.72294 1.12021 1.21872 0.79382 0.96616 1.00678 0.87575 1.23422 1.01656 0.96735 0.95425 1.21590 0.95835 0.96933 0.94773 0.88549 1.19674 0.94528 0.99578 0.93561 1.21064 0.98474 1.00469 0.93491 1.21189 0.92866 0.99522 1.00029 1.21211 0.98106 1.00150 0.94692 1.21190 0.98347 0.99661 0.94309 1.21023 0.92267 1.00265 0.99951 1.23561 1.02295 0.97205 0.95110 1.18168 1.01199 0.85833 0.94347 1.19951 1.05007 0.89255 1.00626 1.20827 0.98306 0.97930 0.94485 1.20671 1.02431 0.96953 0.96408 1.20311 0.97929 0.90911 0.99177 1.18936 1.03396 0.92778 0.93901 0.78045 0.86777 1.18026 1.18543 0.81456 0.86450 0.85989 0.76350 0.90467 0.88255 0.86200 0.86023 0.86049 0.85958 0.85963 0.88554 0.90757 0.86777 0.85737 0.85918 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.39 12.88 -35.23 -0.45 -1.85 16 2 C -0.04 -0.05 3.06 36.01 0.11 0.06 16 3 Si 0.68 -0.06 30.83 -169.99 -5.24 -5.31 16 4 C -0.19 -0.47 5.57 -102.71 -0.57 -1.04 16 5 C 0.07 0.06 9.89 -16.73 -0.17 -0.10 16 6 N -0.47 -0.55 2.27 -115.71 -0.26 -0.81 16 7 C 0.09 -0.24 6.48 -5.19 -0.03 -0.27 16 8 C 0.49 -0.19 7.90 -10.98 -0.09 -0.28 16 9 O -0.51 -2.34 16.02 5.56 0.09 -2.25 16 10 N -0.71 2.14 5.26 -53.02 -0.28 1.86 16 11 C 0.12 -0.23 4.32 -67.12 -0.29 -0.52 16 12 H 0.11 0.01 7.46 -51.93 -0.39 -0.37 16 13 C -0.13 0.40 7.29 -25.91 -0.19 0.21 16 14 C -0.07 0.18 3.86 -90.96 -0.35 -0.17 16 15 H 0.10 -0.34 8.09 -51.93 -0.42 -0.76 16 16 C -0.07 0.04 5.29 -104.62 -0.55 -0.51 16 17 C -0.12 0.03 9.71 -39.58 -0.38 -0.35 16 18 C -0.12 0.00 10.05 -39.58 -0.40 -0.40 16 19 C -0.12 -0.02 10.05 -39.58 -0.40 -0.41 16 20 C -0.12 0.00 10.05 -39.58 -0.40 -0.40 16 21 C -0.12 0.03 8.61 -39.58 -0.34 -0.31 16 22 C -0.14 0.25 7.25 -25.92 -0.19 0.07 16 23 C 0.11 0.37 6.80 -83.99 -0.57 -0.20 16 24 C -0.13 -0.33 10.00 -39.43 -0.39 -0.72 16 25 C -0.10 -0.21 10.01 -39.54 -0.40 -0.61 16 26 C -0.15 -0.38 9.97 -39.95 -0.40 -0.78 16 27 C -0.06 -0.24 10.05 -39.65 -0.40 -0.63 16 28 C -0.09 -0.36 6.35 -105.14 -0.67 -1.02 16 29 H 0.37 -0.16 8.70 45.56 0.40 0.23 16 30 H 0.11 0.16 7.96 -51.92 -0.41 -0.25 16 31 H -0.26 -0.78 7.11 56.52 0.40 -0.38 16 32 H -0.26 -0.19 6.99 56.52 0.40 0.20 16 33 H 0.17 -0.29 6.27 -52.49 -0.33 -0.61 16 34 H 0.12 -0.54 8.14 -51.93 -0.42 -0.97 16 35 H 0.12 -0.71 8.12 -51.93 -0.42 -1.13 16 36 H 0.40 -2.39 8.70 -40.82 -0.36 -2.74 16 37 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 38 H 0.10 -0.26 7.72 -51.93 -0.40 -0.66 16 39 H 0.12 -0.23 8.06 -52.48 -0.42 -0.65 16 40 H 0.12 -0.19 8.06 -52.49 -0.42 -0.61 16 41 H 0.12 -0.16 8.06 -52.49 -0.42 -0.59 16 42 H 0.12 -0.18 8.06 -52.49 -0.42 -0.60 16 43 H 0.12 -0.20 6.66 -52.49 -0.35 -0.55 16 44 H 0.10 -0.15 6.31 -51.93 -0.33 -0.48 16 45 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 46 H 0.11 0.07 8.06 -52.49 -0.42 -0.35 16 47 H 0.12 0.01 8.06 -52.48 -0.42 -0.41 16 48 H 0.12 0.09 8.06 -52.48 -0.42 -0.34 16 49 H 0.12 0.33 8.06 -52.48 -0.42 -0.09 16 LS Contribution 408.81 15.07 6.16 6.16 Total: 0.00 -10.00 408.81 -13.91 -23.91 By element: Atomic # 1 Polarization: -6.47 SS G_CDS: -6.86 Total: -13.33 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -7.06 Total: -8.40 kcal Atomic # 7 Polarization: 1.60 SS G_CDS: -0.54 Total: 1.05 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.36 Total: -4.10 kcal Atomic # 14 Polarization: -0.06 SS G_CDS: -5.24 Total: -5.31 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -10.00 -13.91 -23.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.077 kcal (2) G-P(sol) polarization free energy of solvation -9.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds