Wall clock time and date at job start Mon Mar 8 2021 02:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36414 * 125.80705 * 2 1 4 4 C 1.47380 * 127.18842 * 0.02562 * 3 2 1 5 5 O 1.21613 * 120.00134 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99615 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99665 * 179.72401 * 6 4 3 8 8 H 1.09002 * 112.85201 * 24.08188 * 7 6 4 9 9 C 1.53784 * 113.61491 * 155.28109 * 7 6 4 10 10 C 1.53777 * 87.08172 * 89.11442 * 9 7 6 11 11 H 1.08996 * 113.61378 * 270.80012 * 10 9 7 12 12 C 1.50705 * 113.61003 * 139.98274 * 10 9 7 13 13 C 1.38174 * 119.98900 * 299.72120 * 12 10 9 14 14 C 1.38476 * 119.97620 * 179.72895 * 13 12 10 15 15 F 1.35096 * 120.03079 * 180.25374 * 14 13 12 16 16 C 1.38447 * 119.94591 * 0.54888 * 14 13 12 17 17 C 1.38218 * 119.97227 * 359.72648 * 16 14 13 18 18 C 1.38223 * 120.02900 * 0.02562 * 17 16 14 19 19 C 1.53777 * 87.08146 * 25.43581 * 10 9 7 20 20 C 1.47017 * 105.61723 * 180.26361 * 3 2 1 21 21 C 1.34183 * 105.95593 * 359.57333 * 20 3 2 22 22 C 1.50695 * 125.44032 * 180.14618 * 21 20 3 23 23 O 1.42898 * 109.47283 * 300.31160 * 22 21 20 24 24 Si 1.86303 * 109.47133 * 180.31090 * 22 21 20 25 25 O 1.33658 * 125.79507 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47435 * 89.99243 * 1 2 3 27 27 H 1.08997 * 109.47210 * 209.99983 * 1 2 3 28 28 H 1.09007 * 109.46743 * 329.99905 * 1 2 3 29 29 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 30 30 H 1.08999 * 113.61037 * 203.66621 * 9 7 6 31 31 H 1.09001 * 113.61313 * 334.56329 * 9 7 6 32 32 H 1.07998 * 120.01144 * 0.02562 * 13 12 10 33 33 H 1.08001 * 120.01073 * 179.74803 * 16 14 13 34 34 H 1.08002 * 119.98152 * 180.02562 * 17 16 14 35 35 H 1.07998 * 119.97693 * 180.02562 * 18 17 16 36 36 H 1.08999 * 113.61239 * 220.01646 * 19 10 9 37 37 H 1.08999 * 113.61926 * 89.11880 * 19 10 9 38 38 H 1.08003 * 127.02169 * 179.73831 * 20 3 2 39 39 H 1.09002 * 109.47395 * 60.30974 * 22 21 20 40 40 H 0.96701 * 113.99838 * 300.00374 * 23 22 21 41 41 H 1.48498 * 109.99984 * 179.97438 * 24 22 21 42 42 H 1.48495 * 109.99788 * 301.31752 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3051 1.1063 0.0000 4 6 1.8741 2.5157 0.0005 5 8 0.6891 2.7892 0.0006 6 7 2.7932 3.5014 0.0010 7 6 2.3648 4.9023 -0.0046 8 1 1.3626 5.0401 0.4013 9 6 3.4065 5.8674 0.5856 10 6 3.9872 5.9838 -0.8336 11 1 4.7505 5.2380 -1.0556 12 6 4.4120 7.3828 -1.1991 13 6 3.4844 8.4068 -1.2053 14 6 3.8762 9.6932 -1.5358 15 9 2.9712 10.6963 -1.5372 16 6 5.1948 9.9496 -1.8707 17 6 6.1198 8.9225 -1.8693 18 6 5.7286 7.6398 -1.5343 19 6 2.5885 5.6096 -1.3517 20 6 3.6849 0.5989 -0.0065 21 6 3.5859 -0.7392 -0.0001 22 6 4.7458 -1.7013 -0.0002 23 8 5.5421 -1.4873 -1.1672 24 14 4.1024 -3.4497 0.0005 25 8 2.2887 -1.0841 -0.0005 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 3.7384 3.2833 0.0006 30 1 2.9778 6.7972 0.9595 31 1 4.0843 5.3963 1.2974 32 1 2.4551 8.2049 -0.9479 33 1 5.5007 10.9517 -2.1325 34 1 7.1486 9.1223 -2.1301 35 1 6.4521 6.8380 -1.5331 36 1 2.6059 4.9303 -2.2039 37 1 1.9362 6.4688 -1.5074 38 1 4.5928 1.1838 -0.0123 39 1 5.3538 -1.5375 0.8896 40 1 5.0646 -1.6159 -1.9982 41 1 5.2366 -4.4082 -0.0001 42 1 3.2467 -3.6755 1.1930 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705262_13308374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:13:50 Heat of formation + Delta-G solvation = -39.989335 kcal Electronic energy + Delta-G solvation = -27280.921911 eV Core-core repulsion = 23109.718443 eV Total energy + Delta-G solvation = -4171.203468 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.126 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.93617 -43.76996 -41.53769 -40.16967 -38.66518 -37.98706 -34.80862 -33.97562 -33.06847 -31.79222 -31.47780 -29.38848 -26.75054 -26.72652 -25.66471 -24.38170 -23.65672 -22.80949 -22.19586 -20.87033 -20.09143 -18.99473 -18.55518 -17.90329 -17.68358 -17.28019 -17.06347 -16.97102 -16.75024 -16.64286 -16.05876 -15.92311 -15.74312 -15.40505 -15.17629 -14.78515 -14.68696 -14.27630 -14.22990 -14.10856 -13.99500 -13.85427 -13.80655 -13.49336 -12.97709 -12.93673 -12.86691 -12.76119 -12.46671 -12.25171 -11.97881 -11.71595 -11.23211 -11.16207 -10.93841 -10.61273 -10.14953 -9.89467 -9.62454 -9.56944 -5.00009 0.16084 0.21991 0.22717 0.83005 1.18685 1.40173 1.76444 1.91812 2.08971 2.22079 2.56866 3.21557 3.22295 3.46187 3.47916 3.62177 3.64671 3.73533 3.78143 3.81987 3.93919 4.06134 4.11233 4.22574 4.27134 4.32447 4.41566 4.46236 4.59108 4.60178 4.65821 4.73462 4.76296 4.83686 4.88527 4.92671 4.99236 5.10344 5.10733 5.15282 5.19009 5.21978 5.36904 5.49645 5.62063 5.89726 5.93350 6.46822 6.63380 7.14617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.085 3.915 3 C -0.269 4.269 4 C 0.591 3.409 5 O -0.573 6.573 6 N -0.693 5.693 7 C 0.117 3.883 8 H 0.088 0.912 9 C -0.126 4.126 10 C -0.064 4.064 11 H 0.121 0.879 12 C -0.046 4.046 13 C -0.160 4.160 14 C 0.072 3.928 15 F -0.155 7.155 16 C -0.169 4.169 17 C -0.090 4.090 18 C -0.126 4.126 19 C -0.143 4.143 20 C -0.146 4.146 21 C -0.061 4.061 22 C -0.021 4.021 23 O -0.538 6.538 24 Si 0.773 3.227 25 O -0.172 6.172 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.414 0.586 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.179 0.821 39 H 0.140 0.860 40 H 0.400 0.600 41 H -0.280 1.280 42 H -0.296 1.296 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.333 -2.860 -1.724 5.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.032 3.968 3 C -0.273 4.273 4 C 0.381 3.619 5 O -0.455 6.455 6 N -0.344 5.344 7 C 0.011 3.989 8 H 0.106 0.894 9 C -0.164 4.164 10 C -0.082 4.082 11 H 0.139 0.861 12 C -0.046 4.046 13 C -0.178 4.178 14 C 0.053 3.947 15 F -0.134 7.134 16 C -0.188 4.188 17 C -0.108 4.108 18 C -0.144 4.144 19 C -0.182 4.182 20 C -0.165 4.165 21 C -0.109 4.109 22 C -0.132 4.132 23 O -0.346 6.346 24 Si 0.678 3.322 25 O -0.069 6.069 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.251 0.749 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.173 0.827 35 H 0.171 0.829 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.196 0.804 39 H 0.157 0.843 40 H 0.251 0.749 41 H -0.206 1.206 42 H -0.224 1.224 Dipole moment (debyes) X Y Z Total from point charges 3.820 -3.555 -0.867 5.290 hybrid contribution 0.202 1.115 0.350 1.185 sum 4.022 -2.441 -0.517 4.733 Atomic orbital electron populations 1.20708 0.82684 1.05370 1.05374 1.23217 0.94752 0.83038 0.95800 1.21179 0.94305 0.93328 1.18484 1.17366 0.85185 0.84410 0.74970 1.90763 1.18020 1.84504 1.52188 1.45325 1.09988 1.04713 1.74374 1.21844 0.99457 0.79980 0.97604 0.89427 1.23377 0.97401 0.99452 0.96130 1.21642 0.97282 0.92784 0.96508 0.86124 1.19695 0.93106 0.94779 0.97017 1.21129 1.01737 0.91032 1.03938 1.18046 0.87562 0.85340 1.03729 1.91474 1.67229 1.60249 1.94452 1.21429 0.91665 1.02139 1.03529 1.21362 1.00381 0.91966 0.97082 1.21494 0.95845 0.97827 0.99220 1.23555 0.96575 1.00652 0.97408 1.22786 0.96337 0.93596 1.03754 1.22926 0.82836 0.96081 1.09029 1.24403 0.89354 1.06765 0.92670 1.86533 1.38685 1.93316 1.16108 0.93291 0.78973 0.72667 0.87282 1.83680 1.16823 1.34980 1.71462 0.87970 0.88510 0.88644 0.74887 0.88348 0.89112 0.84341 0.84078 0.82660 0.82919 0.91066 0.88826 0.80366 0.84339 0.74928 1.20615 1.22354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.00 9.89 71.23 0.70 0.71 16 2 C 0.09 0.24 7.37 25.26 0.19 0.43 16 3 C -0.27 -0.79 6.31 -18.99 -0.12 -0.91 16 4 C 0.59 3.03 7.81 86.65 0.68 3.70 16 5 O -0.57 -6.77 14.45 -4.07 -0.06 -6.83 16 6 N -0.69 0.89 5.26 -443.33 -2.33 -1.44 16 7 C 0.12 -0.15 4.32 45.52 0.20 0.05 16 8 H 0.09 0.28 7.47 -2.39 -0.02 0.26 16 9 C -0.13 0.65 7.29 31.12 0.23 0.87 16 10 C -0.06 0.35 3.86 -11.01 -0.04 0.31 16 11 H 0.12 -1.08 8.09 -2.39 -0.02 -1.10 16 12 C -0.05 0.09 5.29 -19.87 -0.11 -0.01 16 13 C -0.16 -0.23 8.60 22.31 0.19 -0.03 16 14 C 0.07 0.33 7.30 22.38 0.16 0.49 16 15 F -0.16 -1.28 17.27 44.97 0.78 -0.51 16 16 C -0.17 -0.22 10.03 22.31 0.22 0.00 16 17 C -0.09 0.23 10.04 22.26 0.22 0.45 16 18 C -0.13 0.45 9.71 22.27 0.22 0.66 16 19 C -0.14 0.34 7.25 31.12 0.23 0.56 16 20 C -0.15 0.20 10.46 23.65 0.25 0.45 16 21 C -0.06 0.07 6.20 24.76 0.15 0.22 16 22 C -0.02 0.09 2.97 71.23 0.21 0.30 16 23 O -0.54 2.57 12.86 -148.98 -1.92 0.65 16 24 Si 0.77 -2.49 32.09 68.60 2.20 -0.29 16 25 O -0.17 -0.24 8.89 4.35 0.04 -0.21 16 26 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.10 -0.34 8.14 -2.39 -0.02 -0.36 16 28 H 0.10 0.33 6.48 -2.38 -0.02 0.32 16 29 H 0.41 -2.76 7.87 -92.71 -0.73 -3.49 16 30 H 0.10 -0.43 7.73 -2.39 -0.02 -0.45 16 31 H 0.09 -0.64 8.14 -2.39 -0.02 -0.65 16 32 H 0.14 -0.02 6.64 -2.91 -0.02 -0.04 16 33 H 0.14 -0.14 8.06 -2.91 -0.02 -0.16 16 34 H 0.16 -1.15 8.06 -2.91 -0.02 -1.17 16 35 H 0.15 -1.31 8.05 -2.91 -0.02 -1.34 16 36 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.09 -0.16 6.30 -2.39 -0.02 -0.18 16 38 H 0.18 -1.16 7.74 -2.91 -0.02 -1.18 16 39 H 0.14 -0.72 7.96 -2.39 -0.02 -0.74 16 40 H 0.40 -4.82 8.70 -74.06 -0.64 -5.46 16 41 H -0.28 -0.64 7.11 99.48 0.71 0.07 16 42 H -0.30 -1.22 7.11 99.48 0.71 -0.51 16 Total: 0.00 -18.90 361.46 2.04 -16.86 By element: Atomic # 1 Polarization: -16.23 SS G_CDS: -0.26 Total: -16.49 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 3.58 Total: 8.25 kcal Atomic # 7 Polarization: 0.89 SS G_CDS: -2.33 Total: -1.44 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -1.94 Total: -6.38 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.78 Total: -0.51 kcal Atomic # 14 Polarization: -2.49 SS G_CDS: 2.20 Total: -0.29 kcal Total: -18.90 2.04 -16.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705262_13308374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.127 kcal (2) G-P(sol) polarization free energy of solvation -18.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds