Wall clock time and date at job start Mon Mar 8 2021 02:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86299 * 109.46985 * 2 1 4 4 C 1.50706 * 109.46798 * 120.00025 * 2 1 3 5 5 C 1.31112 * 118.54393 * 250.00174 * 4 2 1 6 6 N 1.38925 * 121.84856 * 180.38715 * 5 4 2 7 7 C 1.47036 * 118.87880 * 346.67974 * 6 5 4 8 8 C 1.50703 * 109.81927 * 163.20780 * 7 6 5 9 9 O 1.21281 * 119.99611 * 340.85760 * 8 7 6 10 10 N 1.34771 * 120.00305 * 160.86364 * 8 7 6 11 11 C 1.46494 * 120.00416 * 179.97438 * 10 8 7 12 12 H 1.09007 * 112.84770 * 23.80688 * 11 10 8 13 13 C 1.53779 * 113.61607 * 154.99637 * 11 10 8 14 14 C 1.53790 * 87.07821 * 89.20386 * 13 11 10 15 15 H 1.08993 * 113.61569 * 270.79956 * 14 13 11 16 16 C 1.50700 * 113.61240 * 139.98161 * 14 13 11 17 17 C 1.38226 * 119.98948 * 299.99479 * 16 14 13 18 18 C 1.38270 * 120.05340 * 179.97438 * 17 16 14 19 19 C 1.38175 * 120.02272 * 0.02562 * 18 17 16 20 20 C 1.38477 * 119.97476 * 359.97438 * 19 18 17 21 21 F 1.35106 * 120.02198 * 179.97438 * 20 19 18 22 22 C 1.38218 * 119.98739 * 120.00346 * 16 14 13 23 23 C 1.53778 * 113.69577 * 252.53725 * 11 10 8 24 24 C 1.53541 * 107.71119 * 43.63524 * 7 6 5 25 25 C 1.50200 * 118.54533 * 69.97869 * 4 2 1 26 26 H 0.96701 * 113.99830 * 300.00009 * 1 2 3 27 27 H 1.08998 * 109.47258 * 239.99782 * 2 1 3 28 28 H 1.48497 * 109.99850 * 178.67603 * 3 2 1 29 29 H 1.48496 * 110.00143 * 299.99918 * 3 2 1 30 30 H 1.08005 * 119.07866 * 0.35668 * 5 4 2 31 31 H 0.96996 * 120.56183 * 166.66132 * 6 5 4 32 32 H 1.08997 * 109.81923 * 284.06132 * 7 6 5 33 33 H 0.97004 * 119.99935 * 0.02562 * 10 8 7 34 34 H 1.08995 * 113.61930 * 334.65883 * 13 11 10 35 35 H 1.08998 * 113.69219 * 203.76120 * 13 11 10 36 36 H 1.08003 * 119.97173 * 0.02884 * 17 16 14 37 37 H 1.07999 * 119.98208 * 180.27896 * 18 17 16 38 38 H 1.08007 * 120.00902 * 179.97438 * 19 18 17 39 39 H 1.07996 * 120.01122 * 0.02562 * 22 16 14 40 40 H 1.08994 * 113.61758 * 156.32165 * 23 11 10 41 41 H 1.09009 * 113.61150 * 25.42146 * 23 11 10 42 42 H 1.09000 * 109.62183 * 58.80535 * 24 7 6 43 43 H 1.08997 * 109.62062 * 179.35505 * 24 7 6 44 44 H 1.08997 * 109.32968 * 280.22874 * 25 4 2 45 45 H 1.09003 * 109.33143 * 39.88305 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 2.5115 -0.0029 2.1695 6 7 3.0066 -0.5880 3.3282 7 6 2.6219 -1.9713 3.6454 8 6 3.5610 -2.5387 4.6785 9 8 4.6440 -2.0242 4.8611 10 7 3.1974 -3.6177 5.3995 11 6 4.1105 -4.1696 6.4033 12 1 4.8289 -3.4366 6.7706 13 6 3.3984 -4.9481 7.5221 14 6 3.5379 -6.1963 6.6345 15 1 2.7014 -6.3418 5.9511 16 6 3.8919 -7.4450 7.4004 17 6 5.0642 -7.4986 8.1307 18 6 5.3901 -8.6434 8.8343 19 6 4.5441 -9.7356 8.8076 20 6 3.3694 -9.6831 8.0763 21 9 2.5418 -10.7506 8.0491 22 6 3.0442 -8.5364 7.3721 23 6 4.7504 -5.5051 5.9889 24 6 2.7156 -2.7909 2.3505 25 6 1.7446 -2.1977 1.3271 26 1 -0.3933 0.4417 0.7651 27 1 1.7924 -0.5139 -0.8899 28 1 3.5346 1.7703 0.0322 29 1 1.5615 2.4679 -1.2085 30 1 2.6077 1.0649 2.0384 31 1 3.5964 -0.0926 3.9177 32 1 1.5999 -1.9931 4.0236 33 1 2.3314 -4.0294 5.2531 34 1 2.3654 -4.6383 7.6804 35 1 3.9700 -5.0050 8.4484 36 1 5.7258 -6.6452 8.1525 37 1 6.3041 -8.6824 9.4082 38 1 4.7991 -10.6299 9.3569 39 1 2.1286 -8.4946 6.8010 40 1 5.6927 -5.7136 6.4954 41 1 4.8090 -5.6448 4.9094 42 1 3.7321 -2.7431 1.9598 43 1 2.4470 -3.8276 2.5532 44 1 0.7215 -2.4136 1.6347 45 1 1.9312 -2.6488 0.3525 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705262_15413834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:14:33 Heat of formation + Delta-G solvation = -37.533113 kcal Electronic energy + Delta-G solvation = -27678.272660 eV Core-core repulsion = 23577.582885 eV Total energy + Delta-G solvation = -4100.689775 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.153 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.92871 -41.77272 -40.79669 -39.56371 -38.59955 -37.28905 -34.73058 -33.19286 -32.94860 -32.01133 -31.18715 -27.73655 -26.69160 -26.16213 -25.33381 -23.87055 -23.66810 -22.75054 -21.89383 -20.29823 -19.38732 -18.97523 -18.47803 -17.90064 -17.35811 -17.17225 -17.05478 -16.74271 -16.63497 -16.38902 -16.02421 -15.71536 -15.66791 -15.37431 -15.18859 -14.82975 -14.57957 -14.36675 -14.17762 -14.10704 -13.99927 -13.82828 -13.48581 -13.03343 -13.01320 -12.90182 -12.81292 -12.71535 -12.24558 -11.92249 -11.89430 -11.77187 -11.69039 -11.26727 -11.25226 -10.89290 -10.15699 -10.12873 -9.90588 -9.61049 -8.44244 -5.00436 0.15402 0.23670 1.35123 1.40661 1.47029 1.64187 1.88211 2.01271 2.56758 2.65505 3.22948 3.44842 3.52529 3.65336 3.66761 3.73677 3.83786 3.87477 3.90902 3.97754 4.04612 4.09941 4.15185 4.25879 4.32801 4.42260 4.46500 4.62861 4.64731 4.66003 4.76134 4.78516 4.84513 4.90178 4.93089 5.01474 5.02855 5.10713 5.14334 5.18375 5.23650 5.30474 5.37597 5.47516 5.58342 5.63831 5.93295 6.25973 6.46609 6.83585 6.96553 7.11751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.045 4.045 3 Si 0.756 3.244 4 C -0.291 4.291 5 C 0.146 3.854 6 N -0.737 5.737 7 C 0.140 3.860 8 C 0.516 3.484 9 O -0.572 6.572 10 N -0.694 5.694 11 C 0.116 3.884 12 H 0.089 0.911 13 C -0.123 4.123 14 C -0.068 4.068 15 H 0.113 0.887 16 C -0.044 4.044 17 C -0.129 4.129 18 C -0.090 4.090 19 C -0.170 4.170 20 C 0.072 3.928 21 F -0.155 7.155 22 C -0.158 4.158 23 C -0.142 4.142 24 C -0.122 4.122 25 C -0.051 4.051 26 H 0.392 0.608 27 H 0.090 0.910 28 H -0.296 1.296 29 H -0.308 1.308 30 H 0.148 0.852 31 H 0.408 0.592 32 H 0.117 0.883 33 H 0.418 0.582 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.095 0.540 4.694 5.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.157 4.157 3 Si 0.665 3.335 4 C -0.301 4.301 5 C 0.026 3.974 6 N -0.370 5.370 7 C 0.031 3.969 8 C 0.302 3.698 9 O -0.451 6.451 10 N -0.346 5.346 11 C 0.011 3.989 12 H 0.107 0.893 13 C -0.161 4.161 14 C -0.087 4.087 15 H 0.132 0.868 16 C -0.045 4.045 17 C -0.147 4.147 18 C -0.108 4.108 19 C -0.189 4.189 20 C 0.053 3.947 21 F -0.134 7.134 22 C -0.177 4.177 23 C -0.181 4.181 24 C -0.161 4.161 25 C -0.089 4.089 26 H 0.242 0.758 27 H 0.107 0.893 28 H -0.224 1.224 29 H -0.237 1.237 30 H 0.165 0.835 31 H 0.245 0.755 32 H 0.135 0.865 33 H 0.256 0.744 34 H 0.109 0.891 35 H 0.122 0.878 36 H 0.166 0.834 37 H 0.171 0.829 38 H 0.158 0.842 39 H 0.161 0.839 40 H 0.118 0.882 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.118 0.882 44 H 0.097 0.903 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.860 1.015 3.902 4.122 hybrid contribution 0.027 -1.041 -0.321 1.090 sum -0.833 -0.026 3.581 3.676 Atomic orbital electron populations 1.86437 1.18129 1.82094 1.50476 1.24744 0.84710 1.08648 0.97556 0.94398 0.77496 0.76482 0.85129 1.20966 1.14482 0.96650 0.98048 1.20481 0.94635 0.96340 0.85979 1.44396 1.54717 1.12688 1.25173 1.21102 0.98002 0.83819 0.93970 1.20871 0.87202 0.80219 0.81484 1.90728 1.24584 1.61332 1.68466 1.45506 1.21049 1.30000 1.38016 1.21841 0.92927 0.94803 0.89369 0.89324 1.23379 1.02681 0.92935 0.97097 1.21656 0.99510 0.90190 0.97297 0.86845 1.19717 0.93719 0.94498 0.96530 1.21398 0.97069 0.99102 0.97146 1.21332 0.99544 0.91884 0.98043 1.21414 0.94179 1.01699 1.01561 1.18076 0.90543 0.84839 1.01237 1.91478 1.71485 1.55058 1.95362 1.21235 1.02307 0.92320 1.01843 1.23570 0.98235 0.94733 1.01514 1.21843 1.00348 0.99891 0.94035 1.19934 0.99124 0.91361 0.98454 0.75836 0.89252 1.22381 1.23667 0.83543 0.75542 0.86521 0.74389 0.89147 0.87825 0.83379 0.82878 0.84184 0.83868 0.88193 0.91319 0.92922 0.88175 0.90318 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.47 12.88 -148.98 -1.92 -2.39 16 2 C -0.05 -0.02 2.81 71.24 0.20 0.18 16 3 Si 0.76 -0.40 29.72 68.60 2.04 1.64 16 4 C -0.29 0.25 5.37 -16.75 -0.09 0.16 16 5 C 0.15 -0.33 9.62 83.42 0.80 0.48 16 6 N -0.74 1.22 5.47 -328.99 -1.80 -0.58 16 7 C 0.14 -0.59 3.36 44.33 0.15 -0.45 16 8 C 0.52 -0.55 7.09 87.66 0.62 0.08 16 9 O -0.57 -4.56 15.68 -3.03 -0.05 -4.61 16 10 N -0.69 4.79 5.27 -440.05 -2.32 2.48 16 11 C 0.12 -0.65 4.32 45.52 0.20 -0.45 16 12 H 0.09 -0.10 7.46 -2.38 -0.02 -0.12 16 13 C -0.12 1.09 7.29 31.12 0.23 1.32 16 14 C -0.07 0.53 3.86 -11.01 -0.04 0.49 16 15 H 0.11 -1.15 8.09 -2.39 -0.02 -1.17 16 16 C -0.04 0.16 5.29 -19.87 -0.11 0.05 16 17 C -0.13 0.53 8.61 22.27 0.19 0.73 16 18 C -0.09 0.26 10.04 22.26 0.22 0.49 16 19 C -0.17 -0.10 10.03 22.31 0.22 0.12 16 20 C 0.07 0.24 7.30 22.37 0.16 0.40 16 21 F -0.16 -1.09 17.27 44.97 0.78 -0.31 16 22 C -0.16 0.06 9.69 22.31 0.22 0.27 16 23 C -0.14 0.85 7.25 31.12 0.23 1.07 16 24 C -0.12 0.44 5.48 30.79 0.17 0.61 16 25 C -0.05 0.10 5.85 29.70 0.17 0.27 16 26 H 0.39 -3.01 8.70 -74.06 -0.64 -3.65 16 27 H 0.09 0.28 7.96 -2.39 -0.02 0.26 16 28 H -0.30 -1.60 7.11 99.48 0.71 -0.89 16 29 H -0.31 -2.40 7.11 99.48 0.71 -1.70 16 30 H 0.15 -0.87 4.49 -2.91 -0.01 -0.89 16 31 H 0.41 -0.32 8.10 -92.71 -0.75 -1.07 16 32 H 0.12 -1.04 8.14 -2.39 -0.02 -1.06 16 33 H 0.42 -5.36 8.70 -92.70 -0.81 -6.17 16 34 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 35 H 0.10 -0.92 7.72 -2.39 -0.02 -0.94 16 36 H 0.15 -1.19 6.66 -2.91 -0.02 -1.21 16 37 H 0.15 -1.13 8.06 -2.91 -0.02 -1.16 16 38 H 0.14 -0.21 8.06 -2.91 -0.02 -0.23 16 39 H 0.14 -0.45 8.05 -2.91 -0.02 -0.48 16 40 H 0.10 -0.64 6.31 -2.39 -0.02 -0.65 16 41 H 0.07 -0.27 8.14 -2.38 -0.02 -0.29 16 42 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.10 -0.81 8.14 -2.39 -0.02 -0.83 16 44 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 45 H 0.06 0.00 8.14 -2.39 -0.02 -0.01 16 Total: 0.00 -20.59 369.11 -0.84 -21.43 By element: Atomic # 1 Polarization: -22.34 SS G_CDS: -1.12 Total: -23.46 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 3.54 Total: 5.80 kcal Atomic # 7 Polarization: 6.01 SS G_CDS: -4.12 Total: 1.90 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -1.97 Total: -7.00 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.78 Total: -0.31 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: 2.04 Total: 1.64 kcal Total: -20.59 -0.84 -21.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705262_15413834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.106 kcal (2) G-P(sol) polarization free energy of solvation -20.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds