Wall clock time and date at job start Mon Mar 8 2021 02:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86299 * 109.47004 * 2 1 4 4 C 1.50706 * 109.47147 * 240.00515 * 2 1 3 5 5 C 1.38244 * 119.97491 * 119.72203 * 4 2 1 6 6 C 1.38283 * 120.11200 * 179.76679 * 5 4 2 7 7 C 1.38130 * 120.05429 * 0.50914 * 6 5 4 8 8 C 1.38751 * 119.94324 * 359.74770 * 7 6 5 9 9 O 1.35900 * 120.05239 * 179.97438 * 8 7 6 10 10 C 1.42897 * 117.00288 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.47089 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47094 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47449 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99857 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00341 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00179 * 179.97438 * 15 13 12 17 17 H 1.09001 * 112.84679 * 25.33601 * 16 15 13 18 18 C 1.53777 * 113.61467 * 156.52864 * 16 15 13 19 19 C 1.53775 * 87.08017 * 89.11928 * 18 16 15 20 20 H 1.08997 * 113.61942 * 270.79764 * 19 18 16 21 21 C 1.50706 * 113.61390 * 139.98349 * 19 18 16 22 22 C 1.38226 * 119.98272 * 299.72155 * 21 19 18 23 23 C 1.38271 * 120.04829 * 179.77135 * 22 21 19 24 24 C 1.38180 * 120.02116 * 0.50819 * 23 22 21 25 25 C 1.38476 * 119.97868 * 359.74735 * 24 23 22 26 26 F 1.35097 * 120.02663 * 180.02562 * 25 24 23 27 27 C 1.38215 * 119.98783 * 120.00219 * 21 19 18 28 28 C 1.53774 * 113.61935 * 254.13961 * 16 15 13 29 29 C 1.38166 * 119.96660 * 299.99525 * 4 2 1 30 30 H 0.96700 * 114.00205 * 299.99223 * 1 2 3 31 31 H 1.09001 * 109.47626 * 120.00659 * 2 1 3 32 32 H 1.48494 * 110.00213 * 300.00024 * 3 2 1 33 33 H 1.48501 * 109.99913 * 61.32272 * 3 2 1 34 34 H 1.08001 * 119.94451 * 359.97438 * 5 4 2 35 35 H 1.07998 * 119.97599 * 180.23111 * 6 5 4 36 36 H 1.07996 * 120.02813 * 179.72007 * 7 6 5 37 37 H 1.08996 * 109.46899 * 300.00586 * 10 9 8 38 38 H 1.08997 * 109.47080 * 60.00416 * 10 9 8 39 39 H 1.08996 * 109.47624 * 300.00015 * 11 10 9 40 40 H 1.09002 * 109.47345 * 59.99999 * 11 10 9 41 41 H 1.09007 * 109.47154 * 300.00089 * 12 11 10 42 42 H 1.08997 * 109.47166 * 60.00233 * 12 11 10 43 43 H 0.96998 * 119.99891 * 359.97438 * 15 13 12 44 44 H 1.09005 * 113.61830 * 203.66568 * 18 16 15 45 45 H 1.08999 * 113.61786 * 334.57336 * 18 16 15 46 46 H 1.07993 * 119.97527 * 0.02562 * 22 21 19 47 47 H 1.07994 * 119.98750 * 180.25532 * 23 22 21 48 48 H 1.07998 * 120.00797 * 179.77237 * 24 23 22 49 49 H 1.07998 * 120.01397 * 359.95752 * 27 21 19 50 50 H 1.09007 * 113.61238 * 25.43153 * 28 16 15 51 51 H 1.08998 * 113.61557 * 156.33276 * 28 16 15 52 52 H 1.07999 * 120.03143 * 359.96296 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.7213 -0.0362 -2.1431 6 6 3.1878 -0.6866 -3.2707 7 6 2.8566 -2.0090 -3.4934 8 6 2.0594 -2.6863 -2.5817 9 8 1.7318 -3.9872 -2.7988 10 6 2.2433 -4.5956 -3.9863 11 6 1.7718 -6.0493 -4.0582 12 6 2.3200 -6.7010 -5.3293 13 6 1.8552 -8.1327 -5.4006 14 8 1.1548 -8.5874 -4.5210 15 7 2.2178 -8.9080 -6.4417 16 6 1.7663 -10.3000 -6.5106 17 1 0.8415 -10.4727 -5.9602 18 6 1.7498 -10.8723 -7.9378 19 6 3.2071 -11.3009 -7.6984 20 1 3.9370 -10.5396 -7.9732 21 6 3.5374 -12.6588 -8.2626 22 6 2.8541 -13.7757 -7.8196 23 6 3.1528 -15.0216 -8.3397 24 6 4.1421 -15.1527 -9.2955 25 6 4.8309 -14.0351 -9.7362 26 9 5.7980 -14.1621 -10.6709 27 6 4.5274 -12.7875 -9.2185 28 6 2.8709 -11.3223 -6.1952 29 6 1.5972 -2.0331 -1.4486 30 1 -0.3933 0.4416 0.7651 31 1 1.7924 -0.5139 0.8899 32 1 1.5614 2.4679 -1.2084 33 1 1.5878 2.4585 1.2243 34 1 2.9774 0.9992 -1.9732 35 1 3.8079 -0.1590 -3.9802 36 1 3.2174 -2.5152 -4.3765 37 1 1.8795 -4.0524 -4.8585 38 1 3.3327 -4.5670 -3.9689 39 1 2.1352 -6.5928 -3.1861 40 1 0.6823 -6.0776 -4.0758 41 1 1.9570 -6.1576 -6.2018 42 1 3.4095 -6.6728 -5.3113 43 1 2.7776 -8.5443 -7.1454 44 1 1.0636 -11.7097 -8.0646 45 1 1.6397 -10.1126 -8.7117 46 1 2.0836 -13.6747 -7.0697 47 1 2.6155 -15.8930 -7.9959 48 1 4.3777 -16.1264 -9.6989 49 1 5.0637 -11.9152 -9.5616 50 1 3.6654 -10.9255 -5.5630 51 1 2.4907 -12.2823 -5.8463 52 1 0.9768 -2.5582 -0.7374 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705262_4549616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:15:01 Heat of formation + Delta-G solvation = -74.656589 kcal Electronic energy + Delta-G solvation = -32688.989942 eV Core-core repulsion = 27921.444191 eV Total energy + Delta-G solvation = -4767.545751 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.173 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -49.93416 -41.59868 -41.23094 -40.33982 -39.14730 -38.67317 -37.47770 -34.90074 -34.50308 -32.57744 -32.13465 -31.35082 -31.10133 -28.44450 -26.87363 -26.70124 -26.13126 -23.89096 -23.68811 -23.55661 -22.62299 -21.77775 -21.44445 -20.22917 -18.93926 -18.61162 -18.53847 -18.01111 -17.45185 -17.36152 -17.26742 -17.08186 -16.98676 -16.86765 -16.63961 -16.35125 -15.83167 -15.76750 -15.61281 -15.39346 -14.88718 -14.66550 -14.57858 -14.52670 -14.21663 -14.11832 -13.93051 -13.82989 -13.54685 -13.47482 -13.28936 -13.24200 -12.94925 -12.79111 -12.70888 -12.65931 -12.38970 -12.21355 -11.95605 -11.79040 -11.69372 -11.65464 -11.58330 -11.26521 -10.95978 -10.57678 -10.07814 -9.91286 -9.87927 -9.61708 -9.23285 -4.91870 0.14657 0.22315 0.22918 0.41965 1.28392 1.60705 1.61643 1.91161 1.97317 2.37876 2.55976 2.65388 3.22175 3.36666 3.44726 3.61972 3.65421 3.71355 3.76945 3.86238 3.87040 3.89921 3.96772 4.00376 4.09576 4.13022 4.14397 4.18898 4.25065 4.27842 4.36194 4.36549 4.41533 4.43340 4.52815 4.63012 4.67493 4.70898 4.77207 4.85507 4.91992 4.92361 4.99586 5.01229 5.02721 5.10147 5.14565 5.17519 5.19127 5.29098 5.37070 5.39325 5.47963 5.50444 5.65716 5.74844 5.92534 6.44041 6.54310 6.56006 7.26235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.096 4.096 3 Si 0.779 3.221 4 C -0.048 4.048 5 C -0.163 4.163 6 C -0.072 4.072 7 C -0.206 4.206 8 C 0.116 3.884 9 O -0.339 6.339 10 C 0.057 3.943 11 C -0.102 4.102 12 C -0.127 4.127 13 C 0.511 3.489 14 O -0.588 6.588 15 N -0.701 5.701 16 C 0.113 3.887 17 H 0.082 0.918 18 C -0.123 4.123 19 C -0.067 4.067 20 H 0.115 0.885 21 C -0.045 4.045 22 C -0.130 4.130 23 C -0.090 4.090 24 C -0.169 4.169 25 C 0.073 3.927 26 F -0.154 7.154 27 C -0.158 4.158 28 C -0.142 4.142 29 C -0.153 4.153 30 H 0.395 0.605 31 H 0.092 0.908 32 H -0.295 1.295 33 H -0.286 1.286 34 H 0.146 0.854 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.419 0.581 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.147 0.853 47 H 0.153 0.847 48 H 0.141 0.859 49 H 0.144 0.856 50 H 0.068 0.932 51 H 0.098 0.902 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.868 2.155 -3.140 6.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.203 4.203 3 Si 0.683 3.317 4 C -0.049 4.049 5 C -0.180 4.180 6 C -0.090 4.090 7 C -0.224 4.224 8 C 0.071 3.929 9 O -0.253 6.253 10 C -0.017 4.017 11 C -0.140 4.140 12 C -0.167 4.167 13 C 0.299 3.701 14 O -0.468 6.468 15 N -0.354 5.354 16 C 0.007 3.993 17 H 0.100 0.900 18 C -0.161 4.161 19 C -0.085 4.085 20 H 0.133 0.867 21 C -0.045 4.045 22 C -0.148 4.148 23 C -0.108 4.108 24 C -0.188 4.188 25 C 0.054 3.946 26 F -0.133 7.133 27 C -0.177 4.177 28 C -0.181 4.181 29 C -0.172 4.172 30 H 0.245 0.755 31 H 0.110 0.890 32 H -0.223 1.223 33 H -0.213 1.213 34 H 0.163 0.837 35 H 0.179 0.821 36 H 0.174 0.826 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.256 0.744 44 H 0.120 0.880 45 H 0.108 0.892 46 H 0.165 0.835 47 H 0.171 0.829 48 H 0.159 0.841 49 H 0.162 0.838 50 H 0.087 0.913 51 H 0.116 0.884 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.176 2.194 -2.998 5.589 hybrid contribution -0.853 -0.503 0.055 0.992 sum 3.323 1.691 -2.943 4.750 Atomic orbital electron populations 1.86552 1.18644 1.80868 1.50973 1.25216 0.84080 1.12703 0.98332 0.93984 0.90150 0.71099 0.76486 1.19290 0.96984 0.92799 0.95794 1.21147 1.00936 1.00628 0.95306 1.21299 0.97464 0.93589 0.96631 1.21611 1.02744 0.96826 1.01261 1.19176 0.95212 0.83634 0.94874 1.86047 1.71724 1.22787 1.44771 1.23009 0.99812 0.93151 0.85764 1.21153 1.01513 0.92940 0.98400 1.21538 1.04701 0.90551 0.99878 1.21180 0.78935 0.89121 0.80826 1.90740 1.39724 1.76179 1.40171 1.45597 1.53358 1.11233 1.25165 1.21814 0.97888 0.81175 0.98380 0.89970 1.23363 0.95606 1.01569 0.95588 1.21687 0.98053 0.93287 0.95472 0.86740 1.19712 0.94116 0.96001 0.94650 1.21397 1.00758 0.91865 1.00801 1.21328 0.95821 0.98912 0.94728 1.21413 0.98481 0.98393 1.00496 1.18063 0.89818 0.95776 0.90976 1.91476 1.61444 1.96889 1.63495 1.21231 1.00529 0.96319 0.99584 1.23607 0.98802 1.00103 0.95540 1.20324 1.03894 0.95012 0.97979 0.75477 0.89048 1.22283 1.21311 0.83683 0.82095 0.82622 0.90007 0.89568 0.92087 0.92325 0.85416 0.85277 0.74382 0.88047 0.89174 0.83547 0.82896 0.84102 0.83791 0.91289 0.88384 0.86600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.93 12.74 -148.98 -1.90 -4.83 16 2 C -0.10 -0.19 2.81 71.24 0.20 0.01 16 3 Si 0.78 -1.07 29.79 68.60 2.04 0.97 16 4 C -0.05 -0.25 5.42 -19.88 -0.11 -0.36 16 5 C -0.16 -0.21 8.67 22.28 0.19 -0.02 16 6 C -0.07 0.08 10.04 22.25 0.22 0.30 16 7 C -0.21 -0.10 9.04 22.37 0.20 0.11 16 8 C 0.12 0.73 6.69 22.51 0.15 0.88 16 9 O -0.34 -2.31 10.14 -92.42 -0.94 -3.25 16 10 C 0.06 -0.12 4.74 71.98 0.34 0.22 16 11 C -0.10 0.02 4.87 30.59 0.15 0.17 16 12 C -0.13 0.93 5.70 29.85 0.17 1.10 16 13 C 0.51 0.06 7.83 87.66 0.69 0.74 16 14 O -0.59 -6.64 15.60 -3.04 -0.05 -6.69 16 15 N -0.70 3.94 5.26 -440.06 -2.32 1.63 16 16 C 0.11 -0.40 4.29 45.51 0.20 -0.21 16 17 H 0.08 0.14 7.50 -2.39 -0.02 0.12 16 18 C -0.12 0.90 7.29 31.12 0.23 1.12 16 19 C -0.07 0.44 3.87 -10.92 -0.04 0.40 16 20 H 0.11 -1.07 8.09 -2.39 -0.02 -1.09 16 21 C -0.04 0.12 5.29 -19.87 -0.11 0.02 16 22 C -0.13 0.41 8.62 22.27 0.19 0.60 16 23 C -0.09 0.20 10.04 22.26 0.22 0.43 16 24 C -0.17 -0.17 10.03 22.31 0.22 0.06 16 25 C 0.07 0.26 7.30 22.37 0.16 0.43 16 26 F -0.15 -1.09 17.27 44.97 0.78 -0.31 16 27 C -0.16 -0.01 9.69 22.31 0.22 0.20 16 28 C -0.14 0.62 7.27 31.21 0.23 0.85 16 29 C -0.15 -1.28 9.55 22.37 0.21 -1.07 16 30 H 0.39 -1.31 8.74 -74.06 -0.65 -1.95 16 31 H 0.09 -0.12 7.96 -2.39 -0.02 -0.14 16 32 H -0.30 -1.58 7.11 99.48 0.71 -0.88 16 33 H -0.29 -0.73 7.11 99.48 0.71 -0.02 16 34 H 0.15 -0.45 4.87 -2.91 -0.01 -0.46 16 35 H 0.16 -1.21 8.06 -2.91 -0.02 -1.24 16 36 H 0.16 -0.88 6.30 -2.91 -0.02 -0.90 16 37 H 0.08 -0.48 7.66 -2.39 -0.02 -0.49 16 38 H 0.09 -0.56 7.66 -2.39 -0.02 -0.58 16 39 H 0.06 0.26 8.10 -2.39 -0.02 0.24 16 40 H 0.06 0.28 8.10 -2.39 -0.02 0.26 16 41 H 0.13 -1.62 8.14 -2.38 -0.02 -1.64 16 42 H 0.13 -1.67 8.14 -2.39 -0.02 -1.69 16 43 H 0.42 -5.20 8.70 -92.71 -0.81 -6.00 16 44 H 0.10 -0.72 7.73 -2.38 -0.02 -0.74 16 45 H 0.09 -0.82 8.14 -2.39 -0.02 -0.83 16 46 H 0.15 -0.99 6.64 -2.91 -0.02 -1.00 16 47 H 0.15 -1.03 8.06 -2.91 -0.02 -1.05 16 48 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 49 H 0.14 -0.42 8.05 -2.91 -0.02 -0.45 16 50 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 51 H 0.10 -0.46 6.30 -2.39 -0.02 -0.48 16 52 H 0.12 1.17 8.06 -2.91 -0.02 1.15 16 Total: 0.00 -27.88 431.29 1.11 -26.77 By element: Atomic # 1 Polarization: -19.82 SS G_CDS: -0.45 Total: -20.27 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 3.94 Total: 5.98 kcal Atomic # 7 Polarization: 3.94 SS G_CDS: -2.32 Total: 1.63 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -2.88 Total: -14.77 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.78 Total: -0.31 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: 2.04 Total: 0.97 kcal Total: -27.88 1.11 -26.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705262_4549616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.887 kcal (2) G-P(sol) polarization free energy of solvation -27.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds