Wall clock time and date at job start Mon Mar 8 2021 02:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35970 * 117.00255 * 2 1 4 4 C 1.39438 * 120.12349 * 179.97438 * 3 2 1 5 5 O 1.34783 * 133.24476 * 0.39591 * 4 3 2 6 6 C 1.34923 * 110.84323 * 180.09677 * 5 4 3 7 7 C 1.46994 * 125.13994 * 179.81299 * 6 5 4 8 8 O 1.21651 * 120.00128 * 179.69646 * 7 6 5 9 9 N 1.34777 * 119.99905 * 359.69850 * 7 6 5 10 10 C 1.46498 * 119.99813 * 179.97438 * 9 7 6 11 11 H 1.08997 * 112.85100 * 336.19387 * 10 9 7 12 12 C 1.53775 * 113.61281 * 107.50334 * 10 9 7 13 13 C 1.53780 * 87.08253 * 89.11717 * 12 10 9 14 14 H 1.09004 * 113.68894 * 270.87581 * 13 12 10 15 15 C 1.50699 * 113.62078 * 139.98034 * 13 12 10 16 16 C 1.38176 * 119.98501 * 322.52876 * 15 13 12 17 17 C 1.38478 * 119.97514 * 179.97438 * 16 15 13 18 18 F 1.35104 * 120.02657 * 179.97438 * 17 16 15 19 19 C 1.38438 * 119.94879 * 359.74400 * 17 16 15 20 20 C 1.38219 * 119.97316 * 0.50956 * 19 17 16 21 21 C 1.38227 * 120.02402 * 359.46494 * 20 19 17 22 22 C 1.53784 * 87.08250 * 25.43230 * 13 12 10 23 23 C 1.35813 * 109.72175 * 359.55219 * 6 5 4 24 24 C 1.40614 * 119.13849 * 180.02562 * 4 3 2 25 25 C 1.39777 * 120.11800 * 0.02562 * 24 4 3 26 26 C 1.50699 * 120.09438 * 179.97438 * 25 24 4 27 27 O 1.42901 * 109.46657 * 284.99391 * 26 25 24 28 28 Si 1.86305 * 109.47248 * 164.99800 * 26 25 24 29 29 C 1.36636 * 119.81124 * 359.97438 * 25 24 4 30 30 C 1.38265 * 120.11460 * 0.02698 * 3 2 1 31 31 H 1.08999 * 109.47380 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47453 * 299.99789 * 1 2 3 33 33 H 1.08995 * 109.47366 * 59.99634 * 1 2 3 34 34 H 0.97003 * 119.99757 * 0.02562 * 9 7 6 35 35 H 1.08994 * 113.61714 * 334.56774 * 12 10 9 36 36 H 1.08999 * 113.61192 * 203.66066 * 12 10 9 37 37 H 1.08000 * 120.01275 * 359.97066 * 16 15 13 38 38 H 1.08004 * 120.01613 * 180.25245 * 19 17 16 39 39 H 1.08002 * 119.99072 * 179.75102 * 20 19 17 40 40 H 1.07999 * 119.97012 * 180.27779 * 21 20 19 41 41 H 1.08992 * 113.61669 * 89.11792 * 22 13 12 42 42 H 1.09000 * 113.61222 * 219.94235 * 22 13 12 43 43 H 1.08000 * 126.95742 * 180.24595 * 23 6 5 44 44 H 1.08997 * 109.47252 * 44.99478 * 26 25 24 45 45 H 0.96702 * 114.00463 * 300.00407 * 27 26 25 46 46 H 1.48492 * 109.99842 * 58.67678 * 28 26 25 47 47 H 1.48496 * 109.99730 * 179.97438 * 28 26 25 48 48 H 1.08001 * 119.74828 * 180.02562 * 29 25 24 49 49 H 1.07996 * 119.66197 * 359.95271 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4386 1.2874 0.0005 5 8 4.4141 0.3573 -0.0057 6 6 5.6316 0.9386 0.0004 7 6 6.9131 0.2184 0.0001 8 8 7.9595 0.8388 0.0003 9 7 6.9286 -1.1293 -0.0004 10 6 8.2057 -1.8470 -0.0012 11 1 9.0248 -1.2531 -0.4068 12 6 8.5356 -2.5187 1.3421 13 6 7.7808 -3.7529 0.8208 14 1 6.7142 -3.7413 1.0456 15 6 8.4401 -5.0599 1.1790 16 6 9.8181 -5.1618 1.1761 17 6 10.4237 -6.3627 1.5059 18 9 11.7710 -6.4636 1.5029 19 6 9.6477 -7.4583 1.8433 20 6 8.2693 -7.3555 1.8404 21 6 7.6660 -6.1561 1.5116 22 6 8.1168 -3.2619 -0.5973 23 6 5.4944 2.2898 0.0009 24 6 4.0554 2.5510 0.0011 25 6 3.2765 3.7117 0.0016 26 6 3.9381 5.0657 0.0028 27 8 4.4599 5.3396 1.3046 28 14 2.6865 6.3688 -0.4514 29 6 1.9136 3.6151 0.0011 30 6 1.2956 2.3726 0.0006 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 6.0942 -1.6239 -0.0010 35 1 8.0563 -2.0430 2.1976 36 1 9.6012 -2.6907 1.4942 37 1 10.4226 -4.3052 0.9167 38 1 10.1190 -8.3943 2.1046 39 1 7.6636 -8.2112 2.0997 40 1 6.5890 -6.0755 1.5140 41 1 9.0677 -3.6369 -0.9754 42 1 7.2997 -3.3872 -1.3077 43 1 6.2874 3.0230 0.0015 44 1 4.7508 5.0736 -0.7235 45 1 3.7909 5.3483 2.0028 46 1 1.5576 6.3468 0.5130 47 1 3.3265 7.7088 -0.4532 48 1 1.3127 4.5126 0.0011 49 1 0.2173 2.3119 0.0002 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705262_6672420.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:16:22 Heat of formation + Delta-G solvation = -49.364929 kcal Electronic energy + Delta-G solvation = -35879.308904 eV Core-core repulsion = 30848.800647 eV Total energy + Delta-G solvation = -5030.508257 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.141 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -49.93663 -43.78027 -41.67481 -40.74180 -40.21598 -39.13402 -38.75230 -37.12227 -34.84100 -33.67652 -32.13692 -31.80328 -31.49518 -30.90500 -28.57755 -26.78242 -26.75520 -26.24098 -25.03285 -24.02328 -23.70020 -22.73486 -22.13834 -21.79761 -20.35427 -19.90303 -19.09957 -18.64473 -18.44061 -17.88586 -17.77628 -17.29006 -17.23278 -17.05220 -16.99068 -16.65186 -16.59967 -16.22061 -16.04353 -15.91495 -15.84468 -15.48633 -15.11299 -14.78965 -14.66528 -14.58930 -14.53664 -14.22811 -14.20596 -13.94332 -13.54225 -13.50297 -13.43221 -13.26692 -13.02400 -12.96567 -12.49393 -12.47524 -12.26565 -12.12984 -12.06254 -11.77599 -11.66674 -11.64284 -11.27252 -11.03964 -10.61409 -10.36246 -9.91221 -9.84450 -9.63340 -9.02246 -4.89220 -0.69829 0.08462 0.15388 0.21687 0.58799 1.13868 1.30034 1.59202 1.82699 1.84313 1.98113 2.12985 2.37983 2.55781 3.13936 3.20187 3.37974 3.41252 3.53745 3.58669 3.62131 3.64826 3.78640 3.80390 3.85738 3.89621 3.96625 4.05041 4.15873 4.20833 4.24916 4.33007 4.40201 4.42704 4.43514 4.48318 4.55065 4.71176 4.74986 4.77543 4.79880 4.82124 4.85622 4.90473 4.96228 5.03210 5.03787 5.09331 5.15659 5.20399 5.28255 5.34964 5.42318 5.55916 5.58192 5.92417 6.16101 6.27394 6.49648 6.78170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.332 6.332 3 C 0.138 3.862 4 C 0.023 3.977 5 O -0.179 6.179 6 C -0.032 4.032 7 C 0.605 3.395 8 O -0.544 6.544 9 N -0.685 5.685 10 C 0.112 3.888 11 H 0.097 0.903 12 C -0.143 4.143 13 C -0.067 4.067 14 H 0.118 0.882 15 C -0.045 4.045 16 C -0.159 4.159 17 C 0.073 3.927 18 F -0.155 7.155 19 C -0.168 4.168 20 C -0.090 4.090 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.112 4.112 24 C -0.096 4.096 25 C -0.100 4.100 26 C -0.090 4.090 27 O -0.548 6.548 28 Si 0.782 3.218 29 C -0.089 4.089 30 C -0.165 4.165 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.418 0.582 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.171 0.829 44 H 0.115 0.885 45 H 0.386 0.614 46 H -0.262 1.262 47 H -0.305 1.305 48 H 0.165 0.835 49 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.018 -2.008 -2.074 11.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.246 6.246 3 C 0.092 3.908 4 C -0.025 4.025 5 O -0.081 6.081 6 C -0.083 4.083 7 C 0.391 3.609 8 O -0.423 6.423 9 N -0.335 5.335 10 C 0.007 3.993 11 H 0.115 0.885 12 C -0.182 4.182 13 C -0.085 4.085 14 H 0.136 0.864 15 C -0.046 4.046 16 C -0.177 4.177 17 C 0.054 3.946 18 F -0.134 7.134 19 C -0.187 4.187 20 C -0.108 4.108 21 C -0.145 4.145 22 C -0.161 4.161 23 C -0.133 4.133 24 C -0.097 4.097 25 C -0.101 4.101 26 C -0.197 4.197 27 O -0.356 6.356 28 Si 0.685 3.315 29 C -0.106 4.106 30 C -0.184 4.184 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.256 0.744 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.173 0.827 40 H 0.169 0.831 41 H 0.123 0.877 42 H 0.110 0.890 43 H 0.188 0.812 44 H 0.133 0.867 45 H 0.236 0.764 46 H -0.188 1.188 47 H -0.234 1.234 48 H 0.182 0.818 49 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -10.040 -1.379 -2.158 10.362 hybrid contribution 0.555 -0.403 1.364 1.526 sum -9.485 -1.782 -0.795 9.684 Atomic orbital electron populations 1.23485 0.75324 1.06044 1.03140 1.86143 1.24285 1.25751 1.88413 1.17967 0.86075 0.86855 0.99871 1.19191 0.88223 0.87065 1.08068 1.84007 1.12625 1.34981 1.76500 1.21875 0.83981 0.92664 1.09748 1.16649 0.85009 0.82718 0.76484 1.90900 1.31444 1.68242 1.51708 1.45494 1.10578 1.04735 1.72717 1.22008 0.85811 0.93293 0.98168 0.88489 1.23576 1.01944 0.95513 0.97153 1.21660 1.00450 0.89707 0.96701 0.86432 1.19655 0.91930 0.95853 0.97121 1.21129 0.95911 0.96817 1.03878 1.18035 0.76638 0.96268 1.03657 1.91478 1.30529 1.96901 1.94443 1.21427 0.95268 0.98524 1.03464 1.21354 0.93322 0.98994 0.97086 1.21484 1.01494 0.92174 0.99324 1.23387 1.04434 0.92213 0.96072 1.22857 0.95424 0.94451 1.00558 1.19571 0.92291 0.92844 1.05035 1.19548 0.93480 0.93857 1.03198 1.25385 1.07729 0.98694 0.87918 1.86609 1.38964 1.92809 1.17244 0.93896 0.75414 0.73451 0.88727 1.20886 0.92906 0.98856 0.97968 1.21374 1.01815 0.89588 1.05606 0.86586 0.90882 0.90483 0.74407 0.91101 0.88216 0.84142 0.84028 0.82673 0.83116 0.87711 0.88992 0.81162 0.86731 0.76441 1.18786 1.23378 0.81783 0.80302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.11 9.81 113.37 1.11 1.00 16 2 O -0.33 -0.40 10.50 -93.21 -0.98 -1.38 16 3 C 0.14 0.27 6.70 22.57 0.15 0.43 16 4 C 0.02 0.14 7.35 23.14 0.17 0.31 16 5 O -0.18 -1.27 10.28 -13.44 -0.14 -1.40 16 6 C -0.03 -0.24 7.07 24.00 0.17 -0.07 16 7 C 0.61 4.58 7.80 86.54 0.67 5.26 16 8 O -0.54 -7.64 16.42 -4.19 -0.07 -7.71 16 9 N -0.69 -0.64 5.26 -443.71 -2.33 -2.97 16 10 C 0.11 -0.06 4.32 45.52 0.20 0.13 16 11 H 0.10 0.27 7.46 -2.39 -0.02 0.25 16 12 C -0.14 0.23 7.25 31.12 0.23 0.46 16 13 C -0.07 0.29 3.86 -11.01 -0.04 0.25 16 14 H 0.12 -0.83 8.09 -2.38 -0.02 -0.85 16 15 C -0.05 0.06 5.29 -19.87 -0.11 -0.04 16 16 C -0.16 -0.26 8.59 22.31 0.19 -0.07 16 17 C 0.07 0.35 7.30 22.37 0.16 0.51 16 18 F -0.15 -1.30 17.27 44.97 0.78 -0.52 16 19 C -0.17 -0.27 10.03 22.31 0.22 -0.04 16 20 C -0.09 0.18 10.04 22.26 0.22 0.40 16 21 C -0.13 0.35 9.71 22.27 0.22 0.57 16 22 C -0.12 0.57 7.29 31.12 0.23 0.80 16 23 C -0.11 -0.86 10.68 23.79 0.25 -0.60 16 24 C -0.10 -0.54 6.16 -20.24 -0.12 -0.66 16 25 C -0.10 -0.07 5.26 -19.87 -0.10 -0.18 16 26 C -0.09 0.01 2.71 71.24 0.19 0.20 16 27 O -0.55 -1.88 12.88 -148.98 -1.92 -3.80 16 28 Si 0.78 -3.18 30.25 68.60 2.08 -1.10 16 29 C -0.09 0.34 8.62 22.02 0.19 0.53 16 30 C -0.17 0.65 9.03 22.40 0.20 0.85 16 31 H 0.12 -1.21 8.14 -2.39 -0.02 -1.23 16 32 H 0.07 -0.78 7.66 -2.39 -0.02 -0.79 16 33 H 0.08 -0.86 7.66 -2.39 -0.02 -0.87 16 34 H 0.42 -1.25 8.42 -92.71 -0.78 -2.03 16 35 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.10 -0.17 6.31 -2.39 -0.02 -0.18 16 37 H 0.14 -0.03 6.66 -2.91 -0.02 -0.05 16 38 H 0.14 -0.11 8.06 -2.91 -0.02 -0.13 16 39 H 0.16 -1.07 8.06 -2.91 -0.02 -1.09 16 40 H 0.15 -1.11 8.05 -2.91 -0.02 -1.14 16 41 H 0.10 -0.49 7.72 -2.39 -0.02 -0.51 16 42 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 43 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 44 H 0.11 0.01 7.96 -2.39 -0.02 -0.01 16 45 H 0.39 -1.17 8.70 -74.06 -0.64 -1.82 16 46 H -0.26 0.87 6.69 99.48 0.67 1.53 16 47 H -0.31 -1.38 7.11 99.48 0.71 -0.67 16 48 H 0.17 -1.46 4.81 -2.91 -0.01 -1.48 16 49 H 0.18 -1.94 6.26 -2.91 -0.02 -1.96 16 Total: 0.00 -22.73 415.89 1.44 -21.29 By element: Atomic # 1 Polarization: -12.03 SS G_CDS: -0.38 Total: -12.41 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 4.41 Total: 10.02 kcal Atomic # 7 Polarization: -0.64 SS G_CDS: -2.33 Total: -2.97 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -3.10 Total: -14.30 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.78 Total: -0.52 kcal Atomic # 14 Polarization: -3.18 SS G_CDS: 2.08 Total: -1.10 kcal Total: -22.73 1.44 -21.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705262_6672420.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.075 kcal (2) G-P(sol) polarization free energy of solvation -22.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds