Wall clock time and date at job start Mon Mar 8 2021 02:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35534 * 125.68428 * 2 1 4 4 C 1.35445 * 108.87360 * 180.30362 * 3 2 1 5 5 C 1.50705 * 126.06527 * 179.76603 * 4 3 2 6 6 O 1.42900 * 109.47247 * 244.95730 * 5 4 3 7 7 Si 1.86296 * 109.47104 * 4.96237 * 5 4 3 8 8 C 1.39834 * 107.86695 * 359.73354 * 4 3 2 9 9 C 1.37651 * 125.67535 * 179.84641 * 2 1 3 10 10 C 1.46678 * 126.23381 * 359.96367 * 9 2 1 11 11 O 1.21692 * 120.00238 * 3.97441 * 10 9 2 12 12 N 1.34777 * 119.99973 * 183.97632 * 10 9 2 13 13 C 1.46509 * 120.00107 * 174.28763 * 12 10 9 14 14 H 1.08997 * 112.84322 * 23.80295 * 13 12 10 15 15 C 1.53774 * 113.61521 * 154.99925 * 13 12 10 16 16 C 1.53787 * 87.08019 * 89.11514 * 15 13 12 17 17 H 1.09001 * 113.61494 * 270.88173 * 16 15 13 18 18 C 1.50698 * 113.61070 * 140.06332 * 16 15 13 19 19 C 1.38213 * 119.99833 * 121.53012 * 18 16 15 20 20 C 1.38265 * 120.00061 * 179.97438 * 19 18 16 21 21 C 1.50699 * 119.99902 * 179.97438 * 20 19 18 22 22 F 1.39898 * 109.46974 * 90.00385 * 21 20 19 23 23 F 1.39900 * 109.47070 * 209.99961 * 21 20 19 24 24 F 1.39904 * 109.47334 * 330.00553 * 21 20 19 25 25 C 1.38212 * 119.99723 * 0.02570 * 20 19 18 26 26 C 1.38255 * 120.00338 * 359.97438 * 25 20 19 27 27 C 1.38221 * 119.99646 * 359.74623 * 26 25 20 28 28 C 1.53778 * 87.17243 * 25.47542 * 16 15 13 29 29 H 1.09004 * 109.47359 * 264.45743 * 1 2 3 30 30 H 1.08998 * 109.47181 * 24.45565 * 1 2 3 31 31 H 1.09000 * 109.47530 * 144.45540 * 1 2 3 32 32 H 1.08007 * 125.55452 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.46638 * 124.96203 * 5 4 3 34 34 H 0.96702 * 113.99281 * 60.00365 * 6 5 4 35 35 H 1.48503 * 110.00375 * 58.67773 * 7 5 4 36 36 H 1.48500 * 110.00144 * 179.97438 * 7 5 4 37 37 H 1.07995 * 126.45643 * 179.97438 * 8 4 3 38 38 H 0.96998 * 120.00397 * 354.28399 * 12 10 9 39 39 H 1.09003 * 113.61420 * 334.57194 * 15 13 12 40 40 H 1.08994 * 113.69368 * 203.67489 * 15 13 12 41 41 H 1.08002 * 120.00130 * 0.02562 * 19 18 16 42 42 H 1.08003 * 119.99426 * 179.97438 * 25 20 19 43 43 H 1.07994 * 120.00297 * 179.97438 * 26 25 20 44 44 H 1.08000 * 119.99457 * 180.27926 * 27 26 25 45 45 H 1.09002 * 113.61606 * 89.07179 * 28 16 15 46 46 H 1.08995 * 113.61621 * 219.98066 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2556 1.1009 0.0000 4 6 3.5521 0.7092 -0.0068 5 6 4.7537 1.6187 -0.0141 6 8 5.4710 1.4505 -1.2386 7 14 4.1935 3.3888 0.1394 8 6 3.5779 -0.6889 -0.0050 9 6 2.2677 -1.1182 0.0030 10 6 1.8123 -2.5124 0.0075 11 8 0.6239 -2.7646 -0.0642 12 7 2.7099 -3.5143 0.0910 13 6 2.2514 -4.8997 0.2217 14 1 1.2425 -5.0495 -0.1627 15 6 3.2661 -5.9353 -0.2907 16 6 3.8581 -5.9412 1.1286 17 1 4.6385 -5.1953 1.2793 18 6 4.2580 -7.3120 1.6101 19 6 5.5652 -7.5586 1.9852 20 6 5.9320 -8.8162 2.4275 21 6 7.3574 -9.0852 2.8359 22 9 7.5100 -8.8172 4.2004 23 9 7.6689 -10.4261 2.5864 24 9 8.2167 -8.2621 2.1000 25 6 4.9915 -9.8269 2.4940 26 6 3.6839 -9.5802 2.1188 27 6 3.3160 -8.3215 1.6822 28 6 2.4735 -5.4933 1.6258 29 1 -0.3634 -0.0993 1.0229 30 1 -0.3633 0.9354 -0.4254 31 1 -0.3634 -0.8362 -0.5974 32 1 1.9082 2.1236 0.0004 33 1 5.4034 1.3691 0.8248 34 1 4.9531 1.6556 -2.0290 35 1 3.4190 3.5696 1.3935 36 1 5.3693 4.2960 0.1341 37 1 4.4582 -1.3145 -0.0095 38 1 3.6595 -3.3183 0.0646 39 1 3.9469 -5.5428 -1.0461 40 1 2.8151 -6.8846 -0.5796 41 1 6.3000 -6.7688 1.9336 42 1 5.2782 -10.8093 2.8391 43 1 2.9492 -10.3700 2.1704 44 1 2.2936 -8.1276 1.3934 45 1 1.8049 -6.3215 1.8604 46 1 2.5148 -4.7442 2.4165 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_10803934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:17:06 Heat of formation + Delta-G solvation = -107.099695 kcal Electronic energy + Delta-G solvation = -34010.490849 eV Core-core repulsion = 28839.650349 eV Total energy + Delta-G solvation = -5170.840500 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.134 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -51.24795 -48.76970 -48.72554 -42.57237 -41.49987 -40.20847 -38.81539 -37.64025 -34.98224 -33.77351 -32.86682 -32.22555 -30.67713 -28.32452 -27.15893 -26.67504 -26.44982 -25.63155 -24.00730 -23.44494 -22.48952 -21.28407 -20.71572 -20.19513 -19.58199 -19.43683 -19.01448 -18.81165 -17.76162 -17.34800 -17.08507 -16.76816 -16.64922 -16.39955 -16.07991 -15.78539 -15.64533 -15.59694 -15.46004 -15.36995 -15.18276 -15.04491 -15.00037 -14.88557 -14.75306 -14.49136 -14.39285 -14.24094 -14.07585 -13.76266 -13.48562 -13.44689 -13.27546 -13.23730 -13.12418 -12.93216 -12.41836 -12.26692 -11.93065 -11.89343 -11.78706 -11.29445 -11.17998 -10.30114 -10.24096 -10.16013 -9.81183 -9.70485 -9.26272 -4.94577 -0.10037 0.21593 0.38872 1.42491 1.52448 1.56881 1.59669 1.74069 2.05337 2.25453 2.30114 2.41868 2.66194 2.94203 3.33339 3.42021 3.60775 3.62390 3.69179 3.74915 3.83303 3.84563 3.93013 4.04482 4.06272 4.08853 4.22825 4.25478 4.36540 4.37900 4.40494 4.61619 4.63694 4.66889 4.72832 4.75921 4.77275 4.83821 4.88791 4.94245 5.01120 5.11440 5.16182 5.19657 5.30472 5.41383 5.57426 5.68141 5.77103 5.88346 6.16863 6.43259 6.91285 7.09175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.412 5.412 3 C 0.036 3.964 4 C -0.221 4.221 5 C -0.036 4.036 6 O -0.560 6.560 7 Si 0.779 3.221 8 C -0.112 4.112 9 C -0.080 4.080 10 C 0.590 3.410 11 O -0.581 6.581 12 N -0.692 5.692 13 C 0.117 3.883 14 H 0.094 0.906 15 C -0.124 4.124 16 C -0.069 4.069 17 H 0.108 0.892 18 C -0.073 4.073 19 C -0.078 4.078 20 C -0.194 4.194 21 C 0.506 3.494 22 F -0.184 7.184 23 F -0.182 7.182 24 F -0.182 7.182 25 C -0.086 4.086 26 C -0.117 4.117 27 C -0.085 4.085 28 C -0.140 4.140 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.203 0.797 33 H 0.101 0.899 34 H 0.393 0.607 35 H -0.284 1.284 36 H -0.306 1.306 37 H 0.155 0.845 38 H 0.414 0.586 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.157 0.843 44 H 0.154 0.846 45 H 0.106 0.894 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.507 1.882 -2.863 5.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.084 5.084 3 C -0.101 4.101 4 C -0.227 4.227 5 C -0.147 4.147 6 O -0.368 6.368 7 Si 0.686 3.314 8 C -0.139 4.139 9 C -0.192 4.192 10 C 0.380 3.620 11 O -0.462 6.462 12 N -0.343 5.343 13 C 0.012 3.988 14 H 0.112 0.888 15 C -0.162 4.162 16 C -0.087 4.087 17 H 0.126 0.874 18 C -0.073 4.073 19 C -0.096 4.096 20 C -0.196 4.196 21 C 0.452 3.548 22 F -0.166 7.166 23 F -0.163 7.163 24 F -0.163 7.163 25 C -0.104 4.104 26 C -0.134 4.134 27 C -0.102 4.102 28 C -0.178 4.178 29 H 0.095 0.905 30 H 0.137 0.863 31 H 0.103 0.897 32 H 0.219 0.781 33 H 0.118 0.882 34 H 0.243 0.757 35 H -0.211 1.211 36 H -0.234 1.234 37 H 0.173 0.827 38 H 0.251 0.749 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.175 0.825 44 H 0.172 0.828 45 H 0.124 0.876 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.218 2.191 -2.016 6.007 hybrid contribution 1.243 -0.628 0.691 1.555 sum -3.974 1.563 -1.326 4.472 Atomic orbital electron populations 1.22405 0.74783 1.06112 1.04353 1.44035 1.07661 1.04800 1.51909 1.22350 0.89718 0.92539 1.05472 1.19895 0.94242 0.94777 1.13798 1.24453 0.92574 1.08297 0.89389 1.86448 1.42199 1.92182 1.15951 0.94012 0.80298 0.72487 0.84633 1.21413 0.94293 0.95251 1.02929 1.20055 0.90912 0.87614 1.20653 1.17151 0.85335 0.84217 0.75303 1.90782 1.17585 1.85335 1.52544 1.45233 1.09994 1.05332 1.73703 1.21939 0.99568 0.79903 0.97396 0.88809 1.23405 0.97451 0.99435 0.95893 1.21622 0.97591 0.92905 0.96595 0.87415 1.19798 0.92322 0.96327 0.98840 1.20997 0.97390 0.95074 0.96178 1.20002 0.91396 0.98191 1.09992 1.18522 0.87872 0.73825 0.74591 1.93218 1.96507 1.93633 1.33230 1.93184 1.94249 1.34886 1.93968 1.93185 1.73331 1.72597 1.77186 1.21192 0.93403 0.98599 0.97203 1.21473 0.95546 0.98196 0.98230 1.21582 1.00647 0.92119 0.95869 1.23630 0.96358 1.01155 0.96680 0.90495 0.86341 0.89722 0.78089 0.88190 0.75723 1.21109 1.23388 0.82707 0.74866 0.89592 0.87232 0.84315 0.84121 0.82489 0.82834 0.87560 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.16 10.47 127.77 1.34 1.18 16 2 N -0.41 -0.31 3.16 -534.32 -1.69 -2.00 16 3 C 0.04 -0.10 9.92 83.48 0.83 0.73 16 4 C -0.22 0.16 5.43 -20.12 -0.11 0.05 16 5 C -0.04 0.05 3.02 71.24 0.22 0.27 16 6 O -0.56 0.21 12.88 -148.98 -1.92 -1.71 16 7 Si 0.78 -2.92 30.60 68.60 2.10 -0.82 16 8 C -0.11 -0.07 10.29 22.57 0.23 0.17 16 9 C -0.08 -0.24 6.89 40.35 0.28 0.04 16 10 C 0.59 2.71 7.77 86.45 0.67 3.38 16 11 O -0.58 -6.24 14.36 -4.32 -0.06 -6.30 16 12 N -0.69 1.16 5.25 -443.55 -2.33 -1.16 16 13 C 0.12 -0.37 4.37 45.61 0.20 -0.17 16 14 H 0.09 0.04 7.41 -2.39 -0.02 0.02 16 15 C -0.12 0.87 7.29 31.12 0.23 1.09 16 16 C -0.07 0.43 3.85 -11.01 -0.04 0.38 16 17 H 0.11 -0.79 8.09 -2.39 -0.02 -0.81 16 18 C -0.07 0.26 5.29 -19.87 -0.11 0.15 16 19 C -0.08 0.04 9.06 22.27 0.20 0.24 16 20 C -0.19 -0.34 5.45 -19.86 -0.11 -0.44 16 21 C 0.51 2.25 3.36 71.24 0.24 2.49 16 22 F -0.18 -1.20 17.30 44.97 0.78 -0.42 16 23 F -0.18 -1.00 16.46 44.97 0.74 -0.26 16 24 F -0.18 -0.99 16.46 44.97 0.74 -0.25 16 25 C -0.09 0.07 9.40 22.27 0.21 0.28 16 26 C -0.12 0.49 10.05 22.27 0.22 0.72 16 27 C -0.08 0.43 8.55 22.27 0.19 0.62 16 28 C -0.14 0.66 7.28 31.21 0.23 0.89 16 29 H 0.08 -0.18 8.14 -2.38 -0.02 -0.20 16 30 H 0.12 -1.08 8.12 -2.39 -0.02 -1.10 16 31 H 0.08 0.14 6.57 -2.39 -0.02 0.13 16 32 H 0.20 -1.93 6.21 -2.91 -0.02 -1.95 16 33 H 0.10 0.03 7.96 -2.39 -0.02 0.01 16 34 H 0.39 -3.22 8.70 -74.06 -0.64 -3.87 16 35 H -0.28 -0.22 7.11 99.48 0.71 0.48 16 36 H -0.31 -1.43 7.11 99.48 0.71 -0.72 16 37 H 0.16 -0.43 7.45 -2.91 -0.02 -0.45 16 38 H 0.41 -2.47 7.60 -92.71 -0.70 -3.17 16 39 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H 0.11 -0.92 7.66 -2.39 -0.02 -0.93 16 41 H 0.14 -0.30 7.60 -2.91 -0.02 -0.32 16 42 H 0.14 -0.37 7.60 -2.91 -0.02 -0.39 16 43 H 0.16 -1.39 8.06 -2.91 -0.02 -1.41 16 44 H 0.15 -1.46 6.72 -2.91 -0.02 -1.48 16 45 H 0.11 -0.70 6.38 -2.39 -0.02 -0.72 16 46 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: 0.00 -21.56 394.98 3.03 -18.53 By element: Atomic # 1 Polarization: -17.45 SS G_CDS: -0.24 Total: -17.69 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 4.92 Total: 12.08 kcal Atomic # 7 Polarization: 0.85 SS G_CDS: -4.02 Total: -3.16 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -1.98 Total: -8.01 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 2.26 Total: -0.92 kcal Atomic # 14 Polarization: -2.92 SS G_CDS: 2.10 Total: -0.82 kcal Total: -21.56 3.03 -18.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_10803934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.567 kcal (2) G-P(sol) polarization free energy of solvation -21.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds