Wall clock time and date at job start Mon Mar 8 2021 02:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35453 * 125.56178 * 2 1 4 4 C 1.50705 * 126.06863 * 0.05117 * 3 2 1 5 5 O 1.42892 * 109.47190 * 155.76338 * 4 3 2 6 6 Si 1.86301 * 109.46762 * 35.76122 * 4 3 2 7 7 C 1.39839 * 107.86534 * 180.02562 * 3 2 1 8 8 C 1.50697 * 126.45472 * 179.97438 * 7 3 2 9 9 C 1.37866 * 107.08465 * 359.97438 * 7 3 2 10 10 C 1.46677 * 126.23463 * 179.97438 * 9 7 3 11 11 O 1.21695 * 119.99862 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00068 * 180.02562 * 10 9 7 13 13 C 1.46504 * 119.99944 * 180.02562 * 12 10 9 14 14 H 1.09007 * 112.90403 * 336.25080 * 13 12 10 15 15 C 1.53779 * 113.61850 * 107.50298 * 13 12 10 16 16 C 1.53955 * 87.11220 * 89.18496 * 15 13 12 17 17 H 1.09004 * 113.61708 * 270.84649 * 16 15 13 18 18 C 1.50698 * 113.66524 * 139.89151 * 16 15 13 19 19 C 1.38211 * 119.99735 * 142.55653 * 18 16 15 20 20 C 1.38263 * 119.99719 * 180.02562 * 19 18 16 21 21 C 1.50697 * 119.99905 * 179.97438 * 20 19 18 22 22 F 1.39898 * 109.47259 * 89.99883 * 21 20 19 23 23 F 1.39901 * 109.47124 * 210.00333 * 21 20 19 24 24 F 1.39898 * 109.46990 * 330.00237 * 21 20 19 25 25 C 1.38213 * 119.99991 * 359.97438 * 20 19 18 26 26 C 1.38259 * 120.00190 * 359.97438 * 25 20 19 27 27 C 1.38209 * 119.99808 * 359.81133 * 26 25 20 28 28 C 1.53779 * 113.61173 * 205.00290 * 13 12 10 29 29 N 1.35529 * 125.56704 * 180.30586 * 2 1 3 30 30 H 1.09003 * 109.46928 * 83.99206 * 1 2 3 31 31 H 1.09001 * 109.47101 * 203.98875 * 1 2 3 32 32 H 1.08998 * 109.47275 * 323.98982 * 1 2 3 33 33 H 1.09004 * 109.47071 * 275.76561 * 4 3 2 34 34 H 0.96705 * 114.00139 * 300.00150 * 5 4 3 35 35 H 1.48501 * 109.99904 * 58.68518 * 6 4 3 36 36 H 1.48508 * 109.99774 * 179.97438 * 6 4 3 37 37 H 1.08995 * 109.47000 * 270.01454 * 8 7 3 38 38 H 1.08999 * 109.47212 * 30.02002 * 8 7 3 39 39 H 1.09006 * 109.46824 * 150.01447 * 8 7 3 40 40 H 0.97001 * 120.00164 * 0.02562 * 12 10 9 41 41 H 1.08988 * 113.61724 * 203.66768 * 15 13 12 42 42 H 1.09006 * 113.60913 * 334.56836 * 15 13 12 43 43 H 1.08000 * 120.00481 * 359.97438 * 19 18 16 44 44 H 1.07999 * 120.00046 * 179.97438 * 25 20 19 45 45 H 1.07993 * 119.99968 * 179.97438 * 26 25 20 46 46 H 1.08003 * 120.00110 * 180.23163 * 27 26 25 47 47 H 1.08998 * 113.61796 * 25.43080 * 28 13 12 48 48 H 1.09006 * 113.61053 * 156.25156 * 28 13 12 49 49 H 0.97007 * 125.67674 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 1.8198 2.5321 0.0011 5 8 2.8360 3.3711 0.5538 6 14 0.2722 2.6717 1.0288 7 6 3.6270 0.6768 -0.0006 8 6 4.8485 1.5594 -0.0014 9 6 3.6123 -0.7018 -0.0004 10 6 4.7860 -1.5813 -0.0013 11 8 5.9050 -1.1028 -0.0020 12 7 4.6254 -2.9195 -0.0015 13 6 5.7978 -3.7980 -0.0019 14 1 6.6884 -3.3168 -0.4064 15 6 6.0371 -4.5068 1.3417 16 6 5.1280 -5.6344 0.8199 17 1 4.0722 -5.4838 1.0453 18 6 5.6127 -7.0160 1.1766 19 6 4.7037 -8.0033 1.5073 20 6 5.1485 -9.2707 1.8351 21 6 4.1574 -10.3470 2.1961 22 9 3.7741 -11.0349 1.0398 23 9 4.7470 -11.2407 3.0966 24 9 3.0311 -9.7646 2.7871 25 6 6.5020 -9.5506 1.8316 26 6 7.4112 -8.5633 1.4998 27 6 6.9664 -7.2975 1.1678 28 6 5.5248 -5.1892 -0.5976 29 7 2.2953 -1.1024 -0.0059 30 1 -0.3633 0.1076 -1.0221 31 1 -0.3633 -0.9389 0.4178 32 1 -0.3634 0.8313 0.6042 33 1 1.6066 2.8450 -1.0211 34 1 3.0769 3.1497 1.4638 35 1 0.5417 2.2179 2.4169 36 1 -0.2060 4.0776 1.0384 37 1 5.1423 1.7722 -1.0292 38 1 4.6222 2.4935 0.5127 39 1 5.6646 1.0507 0.5120 40 1 3.7335 -3.3009 -0.0013 41 1 7.0709 -4.8163 1.4940 42 1 5.6238 -3.9721 2.1970 43 1 3.6461 -7.7845 1.5104 44 1 6.8494 -10.5405 2.0880 45 1 8.4688 -8.7818 1.4975 46 1 7.6764 -6.5272 0.9050 47 1 4.6982 -5.2056 -1.3078 48 1 6.4186 -5.6848 -0.9767 49 1 1.9834 -2.0210 -0.0104 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_12297754.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:17:22 Heat of formation + Delta-G solvation = -117.894580 kcal Electronic energy + Delta-G solvation = -36286.211932 eV Core-core repulsion = 30959.365712 eV Total energy + Delta-G solvation = -5326.846220 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.150 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -51.24513 -48.76950 -48.71916 -42.70417 -41.53254 -40.25555 -38.85339 -37.95814 -34.91662 -33.65031 -33.15042 -32.77425 -31.99845 -29.35112 -27.75418 -27.15824 -26.67983 -26.57294 -25.77230 -23.46084 -23.01615 -22.37544 -20.84363 -20.65782 -20.21969 -19.57857 -19.47133 -19.34897 -18.96579 -17.65540 -17.38383 -17.10277 -16.73523 -16.58925 -16.41367 -16.09798 -15.89076 -15.80413 -15.59293 -15.49099 -15.18634 -15.13166 -14.98626 -14.90498 -14.88113 -14.72741 -14.52587 -14.34281 -14.23047 -14.13064 -13.93852 -13.76989 -13.70702 -13.46157 -13.30462 -13.26183 -13.06677 -12.93599 -12.53722 -12.42046 -12.36825 -11.91189 -11.86127 -11.80619 -11.30514 -11.20243 -10.53297 -10.26951 -10.19357 -9.82211 -9.52786 -8.99136 -4.74024 -0.10902 0.20624 0.34455 1.21020 1.59644 1.63880 1.68610 1.90816 2.06179 2.12303 2.24455 2.40741 2.66136 2.94107 3.33624 3.39142 3.40135 3.60999 3.65298 3.79732 3.82339 3.83230 3.91382 3.97122 4.05163 4.06842 4.18246 4.21449 4.36782 4.44845 4.59409 4.62349 4.63773 4.66414 4.74163 4.79694 4.80667 4.84596 4.87311 4.89945 4.91874 4.98953 5.07774 5.12090 5.14886 5.23955 5.29778 5.32216 5.40245 5.56999 5.69060 5.75826 5.82564 6.37145 6.49855 6.58141 7.08506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.083 3.917 3 C -0.231 4.231 4 C -0.045 4.045 5 O -0.548 6.548 6 Si 0.739 3.261 7 C -0.072 4.072 8 C -0.094 4.094 9 C -0.079 4.079 10 C 0.591 3.409 11 O -0.565 6.565 12 N -0.700 5.700 13 C 0.115 3.885 14 H 0.089 0.911 15 C -0.142 4.142 16 C -0.066 4.066 17 H 0.113 0.887 18 C -0.073 4.073 19 C -0.076 4.076 20 C -0.194 4.194 21 C 0.507 3.493 22 F -0.183 7.183 23 F -0.183 7.183 24 F -0.181 7.181 25 C -0.086 4.086 26 C -0.118 4.118 27 C -0.086 4.086 28 C -0.123 4.123 29 N -0.516 5.516 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.381 0.619 35 H -0.297 1.297 36 H -0.303 1.303 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.410 0.590 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.155 0.845 46 H 0.151 0.849 47 H 0.089 0.911 48 H 0.106 0.894 49 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.088 -3.850 -2.004 6.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.037 4.037 3 C -0.237 4.237 4 C -0.154 4.154 5 O -0.356 6.356 6 Si 0.645 3.355 7 C -0.081 4.081 8 C -0.151 4.151 9 C -0.191 4.191 10 C 0.380 3.620 11 O -0.444 6.444 12 N -0.351 5.351 13 C 0.010 3.990 14 H 0.107 0.893 15 C -0.180 4.180 16 C -0.084 4.084 17 H 0.131 0.869 18 C -0.073 4.073 19 C -0.094 4.094 20 C -0.196 4.196 21 C 0.453 3.547 22 F -0.165 7.165 23 F -0.164 7.164 24 F -0.163 7.163 25 C -0.104 4.104 26 C -0.136 4.136 27 C -0.104 4.104 28 C -0.161 4.161 29 N -0.115 5.115 30 H 0.140 0.860 31 H 0.129 0.871 32 H 0.107 0.893 33 H 0.135 0.865 34 H 0.230 0.770 35 H -0.224 1.224 36 H -0.231 1.231 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.246 0.754 41 H 0.121 0.879 42 H 0.085 0.915 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.173 0.827 46 H 0.169 0.831 47 H 0.107 0.893 48 H 0.124 0.876 49 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -4.718 -3.152 -1.909 5.987 hybrid contribution 0.750 -0.599 0.935 1.340 sum -3.968 -3.751 -0.974 5.546 Atomic orbital electron populations 1.20789 0.84342 1.03264 1.05718 1.20668 0.95100 0.84898 1.03013 1.19660 0.92626 0.95746 1.15666 1.24525 0.99358 0.86292 1.05220 1.86524 1.57465 1.58171 1.33453 0.94347 0.81972 0.80526 0.78655 1.19929 0.95322 0.91549 1.01315 1.20462 0.94070 0.98859 1.01733 1.19907 0.83820 0.93643 1.21767 1.17168 0.87163 0.82085 0.75569 1.90824 1.25841 1.75789 1.51988 1.45377 1.10114 1.04505 1.75082 1.21875 0.89086 0.90270 0.97799 0.89297 1.23611 1.01284 0.95953 0.97173 1.21643 1.00679 0.89194 0.96858 0.86893 1.19791 0.93226 0.95266 0.99059 1.20996 1.01266 0.90815 0.96291 1.20008 0.94178 0.94537 1.10855 1.18502 0.80314 0.81594 0.74338 1.93221 1.92029 1.81417 1.49792 1.93186 1.83802 1.70606 1.68809 1.93182 1.54522 1.84057 1.84492 1.21187 0.91132 1.01235 0.96846 1.21458 1.00999 0.92569 0.98546 1.21580 0.95618 0.97270 0.95905 1.23397 1.03832 0.93024 0.95826 1.41674 1.03928 1.09245 1.56673 0.85956 0.87125 0.89321 0.86490 0.77011 1.22417 1.23139 0.92790 0.89674 0.92437 0.75364 0.87927 0.91518 0.83919 0.84191 0.82701 0.83114 0.89283 0.87579 0.72461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 1.21 9.41 71.24 0.67 1.88 16 2 C 0.08 -0.44 6.81 41.34 0.28 -0.16 16 3 C -0.23 -0.32 5.32 -20.12 -0.11 -0.43 16 4 C -0.04 -0.05 3.06 71.24 0.22 0.17 16 5 O -0.55 -2.86 10.24 -148.98 -1.53 -4.38 16 6 Si 0.74 -1.24 27.72 68.60 1.90 0.66 16 7 C -0.07 -0.46 6.15 -19.57 -0.12 -0.58 16 8 C -0.09 -0.84 9.43 71.24 0.67 -0.17 16 9 C -0.08 -0.21 7.06 40.35 0.28 0.07 16 10 C 0.59 2.75 7.79 86.45 0.67 3.42 16 11 O -0.57 -7.54 14.40 -4.33 -0.06 -7.61 16 12 N -0.70 2.71 5.26 -443.99 -2.34 0.38 16 13 C 0.12 -0.46 4.32 45.52 0.20 -0.27 16 14 H 0.09 0.07 7.46 -2.38 -0.02 0.06 16 15 C -0.14 0.78 7.26 31.18 0.23 1.01 16 16 C -0.07 0.54 3.87 -10.95 -0.04 0.50 16 17 H 0.11 -1.23 8.10 -2.38 -0.02 -1.25 16 18 C -0.07 0.37 5.29 -19.87 -0.11 0.27 16 19 C -0.08 0.19 9.06 22.27 0.20 0.40 16 20 C -0.19 -0.04 5.45 -19.87 -0.11 -0.15 16 21 C 0.51 1.43 3.36 71.24 0.24 1.67 16 22 F -0.18 -0.84 17.30 44.97 0.78 -0.06 16 23 F -0.18 -0.80 16.46 44.97 0.74 -0.06 16 24 F -0.18 -0.64 16.46 44.97 0.74 0.10 16 25 C -0.09 0.14 9.40 22.27 0.21 0.35 16 26 C -0.12 0.56 10.05 22.27 0.22 0.78 16 27 C -0.09 0.49 8.60 22.27 0.19 0.69 16 28 C -0.12 1.06 7.29 31.12 0.23 1.29 16 29 N -0.52 3.12 5.99 -171.93 -1.03 2.09 16 30 H 0.12 -2.18 8.14 -2.39 -0.02 -2.20 16 31 H 0.11 -2.06 8.14 -2.39 -0.02 -2.08 16 32 H 0.09 -1.19 2.71 -2.39 -0.01 -1.20 16 33 H 0.12 -0.04 7.96 -2.39 -0.02 -0.06 16 34 H 0.38 0.41 8.08 -74.05 -0.60 -0.18 16 35 H -0.30 -1.23 7.11 99.48 0.71 -0.52 16 36 H -0.30 -1.98 7.11 99.48 0.71 -1.27 16 37 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.08 0.60 5.12 -2.39 -0.01 0.59 16 39 H 0.06 0.70 6.48 -2.38 -0.02 0.68 16 40 H 0.41 -4.41 7.83 -92.71 -0.73 -5.13 16 41 H 0.10 -0.67 6.32 -2.39 -0.02 -0.69 16 42 H 0.07 -0.19 8.14 -2.38 -0.02 -0.21 16 43 H 0.14 -0.73 7.60 -2.91 -0.02 -0.75 16 44 H 0.14 -0.46 7.60 -2.91 -0.02 -0.49 16 45 H 0.16 -1.38 8.06 -2.91 -0.02 -1.41 16 46 H 0.15 -1.43 6.68 -2.91 -0.02 -1.45 16 47 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 48 H 0.11 -0.96 7.71 -2.38 -0.02 -0.98 16 49 H 0.43 -6.09 8.19 -92.70 -0.76 -6.85 16 Total: 0.00 -26.17 403.66 2.26 -23.91 By element: Atomic # 1 Polarization: -24.79 SS G_CDS: -0.98 Total: -25.77 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 4.03 Total: 10.74 kcal Atomic # 7 Polarization: 5.84 SS G_CDS: -3.37 Total: 2.47 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -1.59 Total: -11.99 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 2.26 Total: -0.02 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: 1.90 Total: 0.66 kcal Total: -26.17 2.26 -23.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_12297754.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.989 kcal (2) G-P(sol) polarization free energy of solvation -26.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds