Wall clock time and date at job start Mon Mar 8 2021 02:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50699 * 109.47152 * 119.99802 * 2 1 3 5 5 C 1.38898 * 119.67263 * 244.72876 * 4 2 1 6 6 C 1.36475 * 120.61558 * 179.77717 * 5 4 2 7 7 C 1.40072 * 119.82840 * 0.47925 * 6 5 4 8 8 C 1.41588 * 133.38598 * 179.75215 * 7 6 5 9 9 C 1.35856 * 107.73023 * 180.02562 * 8 7 6 10 10 C 1.47061 * 125.42687 * 179.97438 * 9 8 7 11 11 O 1.21644 * 120.00236 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00058 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00102 * 180.02562 * 12 10 9 14 14 H 1.08997 * 112.84432 * 23.80566 * 13 12 10 15 15 C 1.53782 * 113.61351 * 155.00129 * 13 12 10 16 16 C 1.53780 * 87.08046 * 89.11582 * 15 13 12 17 17 H 1.08999 * 113.61613 * 270.79715 * 16 15 13 18 18 C 1.50697 * 113.61321 * 139.97987 * 16 15 13 19 19 C 1.38216 * 120.00021 * 300.00297 * 18 16 15 20 20 C 1.38256 * 119.99877 * 180.02562 * 19 18 16 21 21 C 1.38220 * 120.00174 * 359.97438 * 20 19 18 22 22 C 1.38256 * 119.99862 * 359.97438 * 21 20 19 23 23 C 1.50703 * 119.99973 * 179.97438 * 22 21 20 24 24 F 1.39899 * 109.46909 * 0.02562 * 23 22 21 25 25 F 1.39896 * 109.46931 * 120.00075 * 23 22 21 26 26 F 1.39898 * 109.46875 * 240.00094 * 23 22 21 27 27 C 1.38219 * 120.00127 * 359.81256 * 22 21 20 28 28 C 1.53774 * 113.61380 * 252.49888 * 13 12 10 29 29 N 1.38146 * 109.14949 * 0.02562 * 9 8 7 30 30 C 1.37488 * 108.78833 * 359.97438 * 29 9 8 31 31 C 1.37704 * 119.67581 * 65.00565 * 4 2 1 32 32 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 33 33 H 1.08997 * 109.47332 * 240.00042 * 2 1 3 34 34 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 35 35 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 36 36 H 1.08001 * 119.69406 * 0.02562 * 5 4 2 37 37 H 1.07998 * 120.09253 * 180.24986 * 6 5 4 38 38 H 1.08003 * 126.13290 * 0.04410 * 8 7 6 39 39 H 0.97008 * 119.99784 * 0.02562 * 12 10 9 40 40 H 1.08996 * 113.61427 * 203.66674 * 15 13 12 41 41 H 1.08999 * 113.61314 * 334.48136 * 15 13 12 42 42 H 1.07996 * 119.99629 * 359.97438 * 19 18 16 43 43 H 1.07998 * 119.99910 * 179.97438 * 20 19 18 44 44 H 1.07996 * 119.99864 * 179.97438 * 21 20 19 45 45 H 1.07994 * 119.99825 * 180.22897 * 27 22 21 46 46 H 1.08998 * 113.61608 * 25.43011 * 28 13 12 47 47 H 1.09003 * 113.61394 * 156.33912 * 28 13 12 48 48 H 0.97001 * 125.61279 * 180.02562 * 29 9 8 49 49 H 1.07995 * 120.09994 * 359.94928 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.6463 -0.0035 2.1888 6 6 3.1063 -0.6265 3.3125 7 6 2.8654 -1.9937 3.4993 8 6 3.2032 -2.9095 4.5249 9 6 2.7044 -4.1240 4.1758 10 6 2.8327 -5.3575 4.9662 11 8 3.4263 -5.3406 6.0279 12 7 2.2927 -6.5067 4.5143 13 6 2.4200 -7.7354 5.3020 14 1 2.5818 -7.5432 6.3626 15 6 1.3101 -8.7629 5.0243 16 6 2.2127 -9.3199 3.9109 17 1 2.0603 -8.8400 2.9441 18 6 2.2065 -10.8244 3.8247 19 6 2.6134 -11.5803 4.9079 20 6 2.6082 -12.9606 4.8286 21 6 2.1955 -13.5846 3.6664 22 6 1.7874 -12.8284 2.5832 23 6 1.3379 -13.5087 1.3158 24 9 1.4208 -14.8959 1.4766 25 9 0.0145 -13.1500 1.0382 26 9 2.1608 -13.1115 0.2564 27 6 1.7884 -11.4486 2.6640 28 6 3.4039 -8.7530 4.7012 29 7 2.0585 -4.0160 2.9594 30 6 2.1455 -2.7142 2.5259 31 6 1.6820 -2.0551 1.3909 32 1 -0.3934 0.4416 -0.7651 33 1 1.7924 -0.5138 -0.8899 34 1 1.5877 2.4585 -1.2243 35 1 1.5613 2.4680 1.2084 36 1 2.8365 1.0499 2.0453 37 1 3.6578 -0.0678 4.0542 38 1 3.7577 -2.6831 5.4236 39 1 1.8197 -6.5203 3.6675 40 1 1.1469 -9.4618 5.8447 41 1 0.3853 -8.3181 4.6570 42 1 2.9363 -11.0927 5.8158 43 1 2.9266 -13.5513 5.6748 44 1 2.1918 -14.6627 3.6044 45 1 1.4662 -10.8580 1.8192 46 1 4.1700 -8.3005 4.0715 47 1 3.8132 -9.4493 5.4332 48 1 1.6156 -4.7394 2.4889 49 1 1.1284 -2.5968 0.6384 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_13158378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:19:18 Heat of formation + Delta-G solvation = -93.672710 kcal Electronic energy + Delta-G solvation = -37733.700897 eV Core-core repulsion = 32178.764213 eV Total energy + Delta-G solvation = -5554.936684 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 417.134 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -51.25442 -48.78266 -48.72611 -42.73189 -41.59870 -40.43932 -39.13793 -38.70216 -37.08866 -34.89436 -33.34221 -32.87635 -32.20872 -31.06981 -30.44058 -27.37205 -27.15163 -26.68168 -26.07776 -24.40024 -23.48601 -23.24915 -22.51334 -21.94032 -21.28444 -20.49126 -19.60798 -19.58071 -19.41766 -19.03956 -18.53741 -18.00890 -17.37568 -17.23996 -17.02443 -16.52317 -16.49130 -16.33008 -16.02106 -15.71545 -15.65066 -15.48395 -15.24727 -15.16982 -15.08739 -15.03570 -14.97319 -14.89048 -14.72760 -14.71441 -14.48222 -14.28069 -14.25418 -13.89001 -13.80506 -13.52611 -13.47592 -13.28986 -12.93317 -12.72651 -12.42217 -12.32324 -12.14238 -11.93440 -11.82254 -11.68011 -11.43206 -11.30240 -10.96665 -10.45981 -10.30145 -10.20220 -9.82172 -9.34029 -8.83225 -4.87630 -0.38280 -0.10438 0.21039 0.51599 0.92683 1.32854 1.59131 1.63709 1.72015 1.92278 1.99921 2.14928 2.41172 2.65685 2.72246 2.93587 3.33048 3.38530 3.41294 3.53412 3.60448 3.64477 3.68037 3.81723 3.86870 3.90454 4.03787 4.05835 4.07251 4.20988 4.22010 4.30151 4.36902 4.42730 4.45539 4.58719 4.61952 4.63921 4.75032 4.80619 4.87303 4.88480 4.90550 4.97800 4.99910 5.07228 5.15264 5.27025 5.31233 5.38668 5.39732 5.53662 5.55577 5.57716 5.76549 5.96806 6.22941 6.41735 6.60949 6.92684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.083 4.083 3 Si 0.764 3.236 4 C -0.052 4.052 5 C -0.151 4.151 6 C -0.058 4.058 7 C -0.136 4.136 8 C -0.116 4.116 9 C 0.011 3.989 10 C 0.590 3.410 11 O -0.556 6.556 12 N -0.696 5.696 13 C 0.113 3.887 14 H 0.095 0.905 15 C -0.124 4.124 16 C -0.068 4.068 17 H 0.111 0.889 18 C -0.073 4.073 19 C -0.085 4.085 20 C -0.117 4.117 21 C -0.088 4.088 22 C -0.194 4.194 23 C 0.506 3.494 24 F -0.182 7.182 25 F -0.183 7.183 26 F -0.183 7.183 27 C -0.076 4.076 28 C -0.140 4.140 29 N -0.563 5.563 30 C 0.108 3.892 31 C -0.110 4.110 32 H 0.395 0.605 33 H 0.099 0.901 34 H -0.288 1.288 35 H -0.299 1.299 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.157 0.843 39 H 0.411 0.589 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.069 0.931 47 H 0.106 0.894 48 H 0.431 0.569 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.019 -0.016 -1.660 1.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.192 4.192 3 Si 0.670 3.330 4 C -0.054 4.054 5 C -0.169 4.169 6 C -0.077 4.077 7 C -0.140 4.140 8 C -0.143 4.143 9 C -0.099 4.099 10 C 0.377 3.623 11 O -0.434 6.434 12 N -0.347 5.347 13 C 0.008 3.992 14 H 0.114 0.886 15 C -0.162 4.162 16 C -0.087 4.087 17 H 0.129 0.871 18 C -0.073 4.073 19 C -0.103 4.103 20 C -0.135 4.135 21 C -0.106 4.106 22 C -0.196 4.196 23 C 0.452 3.548 24 F -0.163 7.163 25 F -0.164 7.164 26 F -0.165 7.165 27 C -0.094 4.094 28 C -0.178 4.178 29 N -0.170 5.170 30 C -0.003 4.003 31 C -0.130 4.130 32 H 0.245 0.755 33 H 0.117 0.883 34 H -0.215 1.215 35 H -0.227 1.227 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.174 0.826 39 H 0.248 0.752 40 H 0.127 0.873 41 H 0.105 0.895 42 H 0.172 0.828 43 H 0.174 0.826 44 H 0.160 0.840 45 H 0.157 0.843 46 H 0.088 0.912 47 H 0.125 0.875 48 H 0.272 0.728 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.246 0.282 -0.423 1.346 hybrid contribution -1.747 -0.767 -1.510 2.433 sum -0.501 -0.485 -1.933 2.055 Atomic orbital electron populations 1.86552 1.18453 1.80692 1.51113 1.24977 0.84079 1.11712 0.98384 0.94014 0.90482 0.72333 0.76211 1.19197 0.97637 0.92972 0.95585 1.20677 1.01299 1.00360 0.94557 1.20609 0.97797 0.91843 0.97438 1.18443 1.04382 0.95035 0.96152 1.21099 1.02581 0.90542 1.00104 1.19968 1.05113 0.95564 0.89277 1.17224 0.78412 0.82325 0.84297 1.90861 1.43533 1.85584 1.23441 1.45439 1.56558 1.07699 1.24990 1.21954 0.98063 0.82803 0.96343 0.88650 1.23416 0.97047 0.96882 0.98861 1.21637 0.97483 0.89723 0.99825 0.87126 1.19783 0.98611 0.95921 0.92990 1.21593 0.95858 0.93830 0.98981 1.21479 0.98950 0.95198 0.97871 1.21251 0.96015 1.01129 0.92225 1.19999 1.09986 0.95815 0.93774 1.18520 0.74876 0.76539 0.84875 1.93161 1.95999 1.31562 1.95578 1.93210 1.36931 1.91595 1.94685 1.93210 1.72506 1.90559 1.60185 1.20943 0.97222 0.92140 0.99086 1.23584 0.96468 0.97859 0.99928 1.41756 1.48423 1.08960 1.17819 1.18411 1.00783 0.84486 0.96610 1.20001 1.02594 0.94164 0.96282 0.75456 0.88318 1.21497 1.22708 0.84072 0.83378 0.82555 0.75236 0.87292 0.89493 0.82847 0.82608 0.84011 0.84313 0.91240 0.87530 0.72786 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.48 12.80 -148.98 -1.91 -2.39 16 2 C -0.08 0.16 2.78 71.24 0.20 0.35 16 3 Si 0.76 -2.04 29.81 68.60 2.05 0.01 16 4 C -0.05 -0.08 5.39 -19.83 -0.11 -0.18 16 5 C -0.15 -0.15 8.59 22.02 0.19 0.03 16 6 C -0.06 -0.11 10.06 22.30 0.22 0.12 16 7 C -0.14 -0.58 6.16 -21.36 -0.13 -0.71 16 8 C -0.12 -0.55 10.53 22.54 0.24 -0.32 16 9 C 0.01 0.03 6.96 39.91 0.28 0.30 16 10 C 0.59 1.85 7.80 86.56 0.68 2.53 16 11 O -0.56 -6.23 16.44 -4.17 -0.07 -6.29 16 12 N -0.70 3.11 5.26 -443.65 -2.33 0.78 16 13 C 0.11 -0.57 4.32 45.52 0.20 -0.38 16 14 H 0.10 -0.10 7.46 -2.39 -0.02 -0.12 16 15 C -0.12 1.11 7.29 31.12 0.23 1.33 16 16 C -0.07 0.57 3.86 -11.01 -0.04 0.53 16 17 H 0.11 -1.15 8.09 -2.39 -0.02 -1.17 16 18 C -0.07 0.37 5.29 -19.86 -0.11 0.27 16 19 C -0.09 0.53 8.61 22.27 0.19 0.72 16 20 C -0.12 0.59 10.05 22.27 0.22 0.81 16 21 C -0.09 0.14 9.43 22.27 0.21 0.35 16 22 C -0.19 -0.10 5.37 -19.86 -0.11 -0.21 16 23 C 0.51 1.67 3.32 71.24 0.24 1.91 16 24 F -0.18 -0.80 15.97 44.97 0.72 -0.09 16 25 F -0.18 -0.86 17.23 44.97 0.78 -0.09 16 26 F -0.18 -0.90 17.24 44.97 0.78 -0.13 16 27 C -0.08 0.17 9.26 22.27 0.21 0.37 16 28 C -0.14 0.91 7.25 31.12 0.23 1.14 16 29 N -0.56 1.12 6.07 -177.19 -1.08 0.04 16 30 C 0.11 0.25 7.25 39.13 0.28 0.53 16 31 C -0.11 -0.14 9.69 22.37 0.22 0.07 16 32 H 0.39 -2.79 8.74 -74.06 -0.65 -3.43 16 33 H 0.10 -0.62 7.96 -2.39 -0.02 -0.64 16 34 H -0.29 -0.42 7.11 99.48 0.71 0.29 16 35 H -0.30 -1.44 7.05 99.48 0.70 -0.74 16 36 H 0.14 -0.34 4.81 -2.91 -0.01 -0.35 16 37 H 0.15 -0.36 8.06 -2.91 -0.02 -0.38 16 38 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 39 H 0.41 -4.26 7.76 -92.70 -0.72 -4.98 16 40 H 0.11 -1.06 7.72 -2.39 -0.02 -1.08 16 41 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 42 H 0.15 -1.60 6.66 -2.91 -0.02 -1.62 16 43 H 0.16 -1.46 8.06 -2.91 -0.02 -1.48 16 44 H 0.14 -0.44 7.16 -2.91 -0.02 -0.46 16 45 H 0.14 -0.62 8.06 -2.91 -0.02 -0.64 16 46 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 47 H 0.11 -0.85 6.31 -2.39 -0.02 -0.86 16 48 H 0.43 -3.90 8.12 -92.71 -0.75 -4.65 16 49 H 0.14 -0.26 8.06 -2.91 -0.02 -0.28 16 Total: 0.00 -23.18 421.61 1.44 -21.73 By element: Atomic # 1 Polarization: -22.15 SS G_CDS: -1.01 Total: -23.16 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 3.53 Total: 9.58 kcal Atomic # 7 Polarization: 4.23 SS G_CDS: -3.41 Total: 0.82 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -1.98 Total: -8.68 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 2.27 Total: -0.30 kcal Atomic # 14 Polarization: -2.04 SS G_CDS: 2.05 Total: 0.01 kcal Total: -23.18 1.44 -21.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_13158378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.939 kcal (2) G-P(sol) polarization free energy of solvation -23.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds