Wall clock time and date at job start Mon Mar 8 2021 02:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86305 * 109.46879 * 2 1 4 4 C 1.50697 * 109.47160 * 120.00032 * 2 1 3 5 5 C 1.38555 * 120.32289 * 245.01907 * 4 2 1 6 6 N 1.31526 * 120.90150 * 179.97438 * 5 4 2 7 7 C 1.32714 * 121.64369 * 0.02562 * 6 5 4 8 8 C 1.48165 * 119.72088 * 180.02562 * 7 6 5 9 9 O 1.21517 * 119.99818 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00241 * 0.02562 * 8 7 6 11 11 C 1.46506 * 120.00160 * 179.97438 * 10 8 7 12 12 H 1.09005 * 112.84747 * 23.79768 * 11 10 8 13 13 C 1.53777 * 113.61624 * 155.00197 * 11 10 8 14 14 C 1.53775 * 87.08479 * 89.11406 * 13 11 10 15 15 H 1.09000 * 113.61566 * 270.88726 * 14 13 11 16 16 C 1.50694 * 113.61430 * 139.97953 * 14 13 11 17 17 C 1.38212 * 120.00240 * 299.99961 * 16 14 13 18 18 C 1.38261 * 119.99871 * 179.97438 * 17 16 14 19 19 C 1.38214 * 120.00139 * 359.97438 * 18 17 16 20 20 C 1.38247 * 120.00014 * 359.94962 * 19 18 17 21 21 C 1.50707 * 120.00086 * 180.02562 * 20 19 18 22 22 F 1.39892 * 109.46855 * 0.02562 * 21 20 19 23 23 F 1.39905 * 109.46948 * 120.00062 * 21 20 19 24 24 F 1.39892 * 109.47079 * 240.00140 * 21 20 19 25 25 C 1.38216 * 120.00144 * 359.86098 * 20 19 18 26 26 C 1.53787 * 113.61274 * 252.50054 * 11 10 8 27 27 C 1.39305 * 120.55155 * 0.02562 * 7 6 5 28 28 C 1.38584 * 119.06202 * 359.97438 * 27 7 6 29 29 H 0.96699 * 113.99424 * 299.99645 * 1 2 3 30 30 H 1.08996 * 109.46747 * 240.00408 * 2 1 3 31 31 H 1.48502 * 109.99609 * 178.68388 * 3 2 1 32 32 H 1.48498 * 109.99972 * 300.00156 * 3 2 1 33 33 H 1.07997 * 119.54899 * 0.02562 * 5 4 2 34 34 H 0.96995 * 120.00169 * 359.97438 * 10 8 7 35 35 H 1.09001 * 113.60904 * 203.66826 * 13 11 10 36 36 H 1.08999 * 113.60972 * 334.47833 * 13 11 10 37 37 H 1.07999 * 120.00290 * 359.97438 * 17 16 14 38 38 H 1.08003 * 119.99624 * 179.97438 * 18 17 16 39 39 H 1.08002 * 119.99802 * 179.97438 * 19 18 17 40 40 H 1.07999 * 120.00215 * 180.20800 * 25 20 19 41 41 H 1.09002 * 113.61606 * 25.42500 * 26 11 10 42 42 H 1.08992 * 113.61291 * 156.33522 * 26 11 10 43 43 H 1.07999 * 120.46394 * 179.97438 * 27 7 6 44 44 H 1.07997 * 120.75581 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6408 -0.0171 2.1978 6 7 3.0840 -0.6256 3.2763 7 6 2.8729 -1.9196 3.4821 8 6 3.3910 -2.5618 4.7127 9 8 3.2002 -3.7462 4.9065 10 7 4.0732 -1.8323 5.6177 11 6 4.5851 -2.4672 6.8347 12 1 4.7279 -3.5421 6.7234 13 6 5.7982 -1.7442 7.4432 14 6 4.7937 -0.8983 8.2432 15 1 4.4699 0.0031 7.7227 16 6 5.2234 -0.6334 9.6631 17 6 5.4387 -1.6895 10.5283 18 6 5.8334 -1.4464 11.8309 19 6 6.0132 -0.1475 12.2676 20 6 5.7994 0.9087 11.4017 21 6 5.9960 2.3251 11.8777 22 9 6.3923 2.3153 13.2193 23 9 6.9841 2.9440 11.1045 24 9 4.7947 3.0306 11.7510 25 6 5.4086 0.6657 10.0984 26 6 3.8130 -2.0749 8.1056 27 6 2.1681 -2.6790 2.5509 28 6 1.6892 -2.0641 1.4050 29 1 -0.3932 0.4417 0.7651 30 1 1.7923 -0.5138 -0.8900 31 1 3.5346 1.7703 0.0321 32 1 1.5614 2.4679 -1.2085 33 1 2.8316 1.0375 2.0649 34 1 4.2252 -0.8868 5.4632 35 1 6.4219 -2.3860 8.0656 36 1 6.3738 -1.1703 6.7170 37 1 5.2986 -2.7045 10.1870 38 1 6.0012 -2.2717 12.5072 39 1 6.3211 0.0423 13.2853 40 1 5.2448 1.4907 9.4210 41 1 2.7852 -1.7666 7.9144 42 1 3.8940 -2.8069 8.9090 43 1 1.9974 -3.7320 2.7196 44 1 1.1390 -2.6266 0.6651 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_13287726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:19:41 Heat of formation + Delta-G solvation = -118.359373 kcal Electronic energy + Delta-G solvation = -32988.404600 eV Core-core repulsion = 27844.387322 eV Total energy + Delta-G solvation = -5144.017278 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.118 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -51.22497 -48.75396 -48.69435 -42.02553 -41.34727 -40.24004 -38.90883 -37.85260 -34.90996 -33.70997 -33.01204 -32.78285 -31.97620 -28.03419 -27.14095 -26.64881 -26.19440 -25.03205 -23.98064 -23.44589 -22.56684 -22.00374 -20.41283 -19.55056 -19.47158 -19.29155 -18.98167 -18.56518 -17.70728 -17.34525 -16.97912 -16.69066 -16.50696 -16.33074 -16.19456 -16.02529 -15.77761 -15.61911 -15.50265 -15.24562 -15.13972 -14.98323 -14.86078 -14.80291 -14.58534 -14.50558 -14.35340 -14.25137 -14.14847 -13.77128 -13.56803 -13.43164 -13.23932 -12.90261 -12.54753 -12.39127 -12.19268 -11.89511 -11.77899 -11.49302 -11.26179 -11.06647 -10.70137 -10.57115 -10.36036 -10.20023 -10.07290 -9.78947 -5.00821 -0.61322 -0.07626 0.06801 0.23969 1.24752 1.51006 1.62014 1.64179 1.90638 1.98123 2.43995 2.64934 2.68522 2.92594 2.96654 3.36092 3.42959 3.43507 3.51831 3.62625 3.64927 3.71597 3.78605 3.85112 3.93930 3.93995 4.08842 4.10923 4.12110 4.25268 4.40052 4.40738 4.57052 4.61298 4.66053 4.77378 4.80670 4.90023 4.91169 4.95230 4.98807 5.03074 5.13014 5.18458 5.33068 5.36617 5.42815 5.59652 5.79328 6.25858 6.59625 6.71546 7.02800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.069 4.069 3 Si 0.773 3.227 4 C -0.143 4.143 5 C 0.103 3.897 6 N -0.458 5.458 7 C 0.064 3.936 8 C 0.572 3.428 9 O -0.565 6.565 10 N -0.683 5.683 11 C 0.110 3.890 12 H 0.095 0.905 13 C -0.124 4.124 14 C -0.068 4.068 15 H 0.108 0.892 16 C -0.072 4.072 17 C -0.085 4.085 18 C -0.117 4.117 19 C -0.088 4.088 20 C -0.194 4.194 21 C 0.506 3.494 22 F -0.181 7.181 23 F -0.183 7.183 24 F -0.183 7.183 25 C -0.076 4.076 26 C -0.139 4.139 27 C -0.116 4.116 28 C -0.054 4.054 29 H 0.397 0.603 30 H 0.119 0.881 31 H -0.279 1.279 32 H -0.297 1.297 33 H 0.189 0.811 34 H 0.420 0.580 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.149 0.851 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.576 0.518 -0.408 0.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.179 4.179 3 Si 0.678 3.322 4 C -0.145 4.145 5 C -0.057 4.057 6 N -0.169 5.169 7 C -0.074 4.074 8 C 0.358 3.642 9 O -0.443 6.443 10 N -0.333 5.333 11 C 0.005 3.995 12 H 0.113 0.887 13 C -0.162 4.162 14 C -0.086 4.086 15 H 0.127 0.873 16 C -0.072 4.072 17 C -0.103 4.103 18 C -0.135 4.135 19 C -0.106 4.106 20 C -0.196 4.196 21 C 0.452 3.548 22 F -0.163 7.163 23 F -0.164 7.164 24 F -0.164 7.164 25 C -0.094 4.094 26 C -0.177 4.177 27 C -0.137 4.137 28 C -0.080 4.080 29 H 0.248 0.752 30 H 0.136 0.864 31 H -0.206 1.206 32 H -0.225 1.225 33 H 0.205 0.795 34 H 0.258 0.742 35 H 0.128 0.872 36 H 0.103 0.897 37 H 0.171 0.829 38 H 0.175 0.825 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.086 0.914 42 H 0.126 0.874 43 H 0.167 0.833 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.351 0.447 -0.530 0.777 hybrid contribution -0.284 -0.234 -0.768 0.851 sum 0.067 0.213 -1.298 1.317 Atomic orbital electron populations 1.86516 1.16660 1.82115 1.50585 1.25158 0.85618 1.10918 0.96253 0.93818 0.78136 0.74580 0.85619 1.21764 0.98798 0.95607 0.98348 1.23007 0.93586 1.00766 0.88317 1.67500 1.18433 1.08980 1.22030 1.21074 0.99617 0.90899 0.95773 1.18059 0.77928 0.85583 0.82650 1.90793 1.59226 1.16345 1.77940 1.45473 1.54168 1.13991 1.19698 1.21996 0.95709 0.98377 0.83463 0.88719 1.23404 0.95537 0.98362 0.98894 1.21611 0.97115 0.98801 0.91111 0.87345 1.19776 0.99134 0.92051 0.96261 1.21586 0.95348 1.00299 0.93033 1.21477 0.98747 0.96494 0.96762 1.21246 0.97006 0.92394 0.99961 1.19997 1.11069 0.90749 0.97740 1.18508 0.73703 0.87705 0.74862 1.93158 1.90937 1.96874 1.35308 1.93212 1.62911 1.85067 1.75220 1.93209 1.46316 1.81295 1.95612 1.20949 0.96500 0.98362 0.93601 1.23574 0.98670 0.97864 0.97583 1.22281 0.95658 1.02300 0.93441 1.21736 0.95575 0.94196 0.96460 0.75218 0.86400 1.20588 1.22481 0.79511 0.74222 0.87182 0.89731 0.82863 0.82549 0.83956 0.84355 0.91354 0.87420 0.83341 0.82279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.38 12.84 -148.98 -1.91 0.47 16 2 C -0.07 0.37 2.82 71.24 0.20 0.58 16 3 Si 0.77 -5.09 29.83 68.60 2.05 -3.04 16 4 C -0.14 0.56 5.36 -19.70 -0.11 0.46 16 5 C 0.10 -0.39 9.84 84.81 0.83 0.44 16 6 N -0.46 -0.01 9.54 -184.92 -1.76 -1.77 16 7 C 0.06 0.18 6.75 41.91 0.28 0.46 16 8 C 0.57 2.94 7.81 86.88 0.68 3.62 16 9 O -0.56 -6.58 15.92 -3.77 -0.06 -6.64 16 10 N -0.68 0.39 5.25 -442.58 -2.32 -1.93 16 11 C 0.11 -0.29 4.32 45.52 0.20 -0.10 16 12 H 0.09 0.06 7.46 -2.38 -0.02 0.04 16 13 C -0.12 0.82 7.29 31.12 0.23 1.05 16 14 C -0.07 0.42 3.86 -11.01 -0.04 0.37 16 15 H 0.11 -0.77 8.10 -2.39 -0.02 -0.79 16 16 C -0.07 0.27 5.29 -19.87 -0.11 0.16 16 17 C -0.09 0.45 8.61 22.27 0.19 0.64 16 18 C -0.12 0.51 10.05 22.27 0.22 0.74 16 19 C -0.09 0.09 9.43 22.27 0.21 0.30 16 20 C -0.19 -0.25 5.37 -19.87 -0.11 -0.36 16 21 C 0.51 1.97 3.32 71.24 0.24 2.21 16 22 F -0.18 -0.87 15.97 44.97 0.72 -0.15 16 23 F -0.18 -0.98 17.23 44.97 0.78 -0.20 16 24 F -0.18 -1.01 17.24 44.97 0.78 -0.23 16 25 C -0.08 0.07 9.26 22.27 0.21 0.28 16 26 C -0.14 0.65 7.25 31.13 0.23 0.87 16 27 C -0.12 -0.16 9.63 22.61 0.22 0.06 16 28 C -0.05 0.11 9.83 22.44 0.22 0.34 16 29 H 0.40 -4.85 8.70 -74.06 -0.64 -5.49 16 30 H 0.12 -0.57 7.96 -2.39 -0.02 -0.59 16 31 H -0.28 0.54 7.11 99.48 0.71 1.25 16 32 H -0.30 -0.50 7.11 99.48 0.71 0.21 16 33 H 0.19 -1.79 4.92 -2.91 -0.01 -1.80 16 34 H 0.42 -1.55 8.03 -92.71 -0.74 -2.29 16 35 H 0.11 -0.90 7.72 -2.39 -0.02 -0.91 16 36 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H 0.15 -1.46 6.66 -2.91 -0.02 -1.48 16 38 H 0.16 -1.40 8.06 -2.91 -0.02 -1.42 16 39 H 0.14 -0.39 7.16 -2.91 -0.02 -0.41 16 40 H 0.14 -0.40 8.06 -2.91 -0.02 -0.43 16 41 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.11 -0.73 6.31 -2.39 -0.02 -0.74 16 43 H 0.15 0.24 7.64 -2.91 -0.02 0.22 16 44 H 0.16 -0.78 8.06 -2.91 -0.02 -0.81 16 Total: 0.00 -19.39 385.27 1.79 -17.60 By element: Atomic # 1 Polarization: -15.97 SS G_CDS: -0.25 Total: -16.22 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 3.79 Total: 12.12 kcal Atomic # 7 Polarization: 0.39 SS G_CDS: -4.09 Total: -3.70 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -1.97 Total: -6.17 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 2.27 Total: -0.59 kcal Atomic # 14 Polarization: -5.09 SS G_CDS: 2.05 Total: -3.04 kcal Total: -19.39 1.79 -17.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_13287726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.761 kcal (2) G-P(sol) polarization free energy of solvation -19.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds