Wall clock time and date at job start Mon Mar 8 2021 02:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36765 * 125.80053 * 2 1 4 4 C 1.47269 * 126.94296 * 359.97438 * 3 2 1 5 5 O 1.21624 * 119.99858 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99682 * 180.02562 * 4 3 2 7 7 C 1.46502 * 119.99638 * 180.02562 * 6 4 3 8 8 H 1.09002 * 112.85073 * 25.32375 * 7 6 4 9 9 C 1.53779 * 113.61786 * 156.52990 * 7 6 4 10 10 C 1.53781 * 87.08309 * 89.11068 * 9 7 6 11 11 H 1.09006 * 113.61389 * 270.88470 * 10 9 7 12 12 C 1.50698 * 113.60996 * 140.06904 * 10 9 7 13 13 C 1.38212 * 120.00135 * 120.00362 * 12 10 9 14 14 C 1.38251 * 120.00495 * 179.97438 * 13 12 10 15 15 C 1.50695 * 120.00653 * 179.97438 * 14 13 12 16 16 F 1.39904 * 109.47328 * 89.99607 * 15 14 13 17 17 F 1.39891 * 109.47824 * 209.99929 * 15 14 13 18 18 F 1.39903 * 109.46912 * 330.00219 * 15 14 13 19 19 C 1.38214 * 119.99723 * 359.97270 * 14 13 12 20 20 C 1.38259 * 120.00213 * 359.95868 * 19 14 13 21 21 C 1.38214 * 119.99673 * 359.85774 * 20 19 14 22 22 C 1.53787 * 113.61139 * 254.13520 * 7 6 4 23 23 C 1.46692 * 106.11397 * 179.74725 * 3 2 1 24 24 C 1.34481 * 106.33252 * 0.38929 * 23 3 2 25 25 C 1.50699 * 125.57112 * 179.86800 * 24 23 3 26 26 O 1.42895 * 109.47044 * 64.72441 * 25 24 23 27 27 Si 1.86300 * 109.46944 * 184.72369 * 25 24 23 28 28 N 1.34657 * 125.80230 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47177 * 269.99642 * 1 2 3 30 30 H 1.08997 * 109.47659 * 29.99359 * 1 2 3 31 31 H 1.09000 * 109.47216 * 150.00032 * 1 2 3 32 32 H 0.96995 * 120.00493 * 359.97438 * 6 4 3 33 33 H 1.08993 * 113.61623 * 203.66326 * 9 7 6 34 34 H 1.09001 * 113.61074 * 334.56100 * 9 7 6 35 35 H 1.08002 * 119.99799 * 359.97438 * 13 12 10 36 36 H 1.07998 * 120.00525 * 179.97438 * 19 14 13 37 37 H 1.07997 * 120.00070 * 180.02562 * 20 19 14 38 38 H 1.07999 * 120.00203 * 180.20772 * 21 20 19 39 39 H 1.08995 * 113.61283 * 25.42845 * 22 7 6 40 40 H 1.08997 * 113.61238 * 156.33502 * 22 7 6 41 41 H 1.08002 * 126.82916 * 180.28169 * 23 3 2 42 42 H 1.09001 * 109.47358 * 304.71727 * 25 24 23 43 43 H 0.96695 * 114.00385 * 60.00268 * 26 25 24 44 44 H 1.48506 * 110.00048 * 180.02562 * 27 25 24 45 45 H 1.48502 * 109.99996 * 301.31619 * 27 25 24 46 46 H 0.97005 * 124.85065 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8701 2.5156 -0.0005 5 8 0.6839 2.7839 -0.0006 6 7 2.7850 3.5054 -0.0010 7 6 2.3503 4.9045 -0.0009 8 1 1.3579 5.0394 0.4291 9 6 3.4020 5.8763 0.5597 10 6 3.9469 5.9899 -0.8738 11 1 4.7067 5.2456 -1.1124 12 6 4.3582 7.3889 -1.2541 13 6 5.6647 7.6491 -1.6221 14 6 6.0420 8.9324 -1.9715 15 6 7.4667 9.2163 -2.3723 16 9 7.6042 9.0508 -3.7546 17 9 7.7958 10.5309 -2.0251 18 9 8.3230 8.3307 -1.7092 19 6 5.1125 9.9551 -1.9533 20 6 3.8051 9.6946 -1.5865 21 6 3.4271 8.4109 -1.2409 22 6 2.5349 5.6068 -1.3565 23 6 3.6882 0.6151 0.0062 24 6 3.6096 -0.7274 0.0006 25 6 4.7820 -1.6742 0.0011 26 8 5.5096 -1.5308 1.2225 27 14 4.1657 -3.4256 -0.1527 28 7 2.2947 -1.0921 0.0005 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 3.7310 3.2915 -0.0006 33 1 2.9787 6.8055 0.9408 34 1 4.0993 5.4107 1.2562 35 1 6.3910 6.8499 -1.6368 36 1 5.4072 10.9577 -2.2258 37 1 3.0787 10.4936 -1.5727 38 1 2.4052 8.2066 -0.9576 39 1 2.5327 4.9239 -2.2060 40 1 1.8749 6.4626 -1.4983 41 1 4.5890 1.2109 0.0122 42 1 5.4354 -1.4439 -0.8404 43 1 4.9892 -1.7208 2.0150 44 1 5.3124 -4.3694 -0.1528 45 1 3.2485 -3.7419 0.9716 46 1 1.9734 -2.0074 0.0005 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_9865296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:23:42 Heat of formation + Delta-G solvation = -118.246732 kcal Electronic energy + Delta-G solvation = -33948.161398 eV Core-core repulsion = 28776.837526 eV Total energy + Delta-G solvation = -5171.323872 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.134 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -51.23126 -48.75381 -48.70632 -42.49511 -41.46518 -40.15350 -38.74446 -37.87755 -34.65164 -32.88976 -32.80453 -32.41693 -31.58426 -28.93285 -27.14999 -26.62438 -26.59091 -25.38453 -23.64419 -23.41750 -22.39937 -21.55307 -20.75957 -20.23108 -19.56431 -19.41501 -18.98144 -18.73598 -17.82754 -17.34495 -16.98752 -16.91440 -16.59366 -16.37734 -16.07142 -15.77313 -15.59319 -15.54939 -15.41178 -15.16875 -15.07744 -14.95141 -14.86782 -14.81804 -14.65446 -14.52725 -14.37127 -14.14148 -13.94998 -13.81982 -13.73735 -13.39129 -13.36478 -13.17596 -12.88860 -12.75808 -12.60727 -12.38895 -12.14536 -11.85390 -11.72415 -11.22347 -11.00239 -10.61807 -10.20853 -10.10306 -9.82340 -9.76082 -9.16139 -5.05234 -0.07987 0.23765 0.70365 1.12879 1.27515 1.44637 1.61367 1.81615 2.04086 2.40381 2.43679 2.52684 2.67927 2.96039 3.33854 3.35269 3.47687 3.65463 3.66884 3.74974 3.85219 3.88113 3.96508 4.08467 4.10972 4.12278 4.23977 4.25382 4.40498 4.51568 4.54929 4.66055 4.69073 4.72465 4.77701 4.79878 4.89176 4.91266 4.98601 5.04892 5.06344 5.15401 5.19504 5.28991 5.33010 5.49069 5.68094 5.71526 5.79102 5.86505 6.39743 6.44794 6.66227 7.36153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.119 3.881 3 C -0.265 4.265 4 C 0.590 3.410 5 O -0.584 6.584 6 N -0.701 5.701 7 C 0.117 3.883 8 H 0.088 0.912 9 C -0.125 4.125 10 C -0.067 4.067 11 H 0.107 0.893 12 C -0.072 4.072 13 C -0.078 4.078 14 C -0.194 4.194 15 C 0.506 3.494 16 F -0.184 7.184 17 F -0.182 7.182 18 F -0.182 7.182 19 C -0.086 4.086 20 C -0.117 4.117 21 C -0.085 4.085 22 C -0.140 4.140 23 C -0.136 4.136 24 C -0.021 4.021 25 C -0.047 4.047 26 O -0.541 6.541 27 Si 0.754 3.246 28 N -0.535 5.535 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.410 0.590 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.157 0.843 42 H 0.140 0.860 43 H 0.387 0.613 44 H -0.295 1.295 45 H -0.274 1.274 46 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.829 -3.286 -0.232 4.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.001 4.001 3 C -0.275 4.275 4 C 0.381 3.619 5 O -0.466 6.466 6 N -0.351 5.351 7 C 0.012 3.988 8 H 0.106 0.894 9 C -0.163 4.163 10 C -0.086 4.086 11 H 0.125 0.875 12 C -0.072 4.072 13 C -0.096 4.096 14 C -0.196 4.196 15 C 0.452 3.548 16 F -0.165 7.165 17 F -0.163 7.163 18 F -0.163 7.163 19 C -0.104 4.104 20 C -0.135 4.135 21 C -0.103 4.103 22 C -0.178 4.178 23 C -0.160 4.160 24 C -0.130 4.130 25 C -0.157 4.157 26 O -0.348 6.348 27 Si 0.658 3.342 28 N -0.136 5.136 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.247 0.753 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.175 0.825 38 H 0.170 0.830 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.175 0.825 42 H 0.157 0.843 43 H 0.236 0.764 44 H -0.222 1.222 45 H -0.200 1.200 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -3.162 -3.862 -0.276 4.999 hybrid contribution 1.123 0.082 0.979 1.492 sum -2.039 -3.780 0.703 4.352 Atomic orbital electron populations 1.20621 0.86082 1.04820 1.03916 1.20566 0.94294 0.85597 0.99628 1.20185 0.94125 0.91731 1.21426 1.17579 0.84988 0.84882 0.74483 1.90727 1.18051 1.84926 1.52896 1.45369 1.09962 1.04799 1.74973 1.21822 0.99237 0.80250 0.97538 0.89351 1.23388 0.97460 0.99758 0.95658 1.21645 0.97455 0.92542 0.96919 0.87453 1.19807 0.92388 0.96211 0.98841 1.20987 0.97256 0.94946 0.96413 1.19996 0.91497 0.97623 1.10456 1.18509 0.87825 0.73869 0.74562 1.93219 1.96623 1.95189 1.31515 1.93181 1.93890 1.37319 1.91908 1.93183 1.73492 1.68885 1.80739 1.21188 0.93464 0.98749 0.97006 1.21469 0.95504 0.98063 0.98416 1.21584 1.00653 0.92076 0.95961 1.23611 0.96031 1.00847 0.97322 1.21969 0.95412 0.93181 1.05478 1.20599 0.84643 0.95557 1.12182 1.24624 0.93209 1.07552 0.90322 1.86631 1.41056 1.91034 1.16096 0.94554 0.80371 0.71971 0.87300 1.41714 1.05268 1.08797 1.57786 0.90054 0.89822 0.88927 0.75299 0.87500 0.89821 0.84273 0.84096 0.82511 0.82951 0.91556 0.87805 0.82516 0.84268 0.76394 1.22169 1.20033 0.73324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.08 9.88 71.24 0.70 0.79 16 2 C 0.12 0.11 7.17 41.78 0.30 0.40 16 3 C -0.26 -0.89 6.29 -19.04 -0.12 -1.01 16 4 C 0.59 3.65 7.81 86.62 0.68 4.32 16 5 O -0.58 -7.40 14.43 -4.11 -0.06 -7.46 16 6 N -0.70 -0.01 5.26 -443.44 -2.33 -2.35 16 7 C 0.12 -0.16 4.30 45.52 0.20 0.03 16 8 H 0.09 0.22 7.50 -2.39 -0.02 0.20 16 9 C -0.12 0.68 7.29 31.12 0.23 0.91 16 10 C -0.07 0.34 3.87 -10.92 -0.04 0.30 16 11 H 0.11 -0.67 8.09 -2.38 -0.02 -0.69 16 12 C -0.07 0.20 5.29 -19.87 -0.11 0.09 16 13 C -0.08 0.00 9.06 22.27 0.20 0.21 16 14 C -0.19 -0.40 5.45 -19.87 -0.11 -0.50 16 15 C 0.51 2.31 3.36 71.23 0.24 2.55 16 16 F -0.18 -1.20 17.30 44.97 0.78 -0.42 16 17 F -0.18 -1.02 16.46 44.97 0.74 -0.28 16 18 F -0.18 -1.00 16.46 44.97 0.74 -0.26 16 19 C -0.09 0.03 9.40 22.27 0.21 0.24 16 20 C -0.12 0.43 10.05 22.27 0.22 0.65 16 21 C -0.09 0.36 8.63 22.27 0.19 0.55 16 22 C -0.14 0.45 7.27 31.22 0.23 0.68 16 23 C -0.14 0.05 10.45 23.62 0.25 0.30 16 24 C -0.02 0.06 6.09 40.98 0.25 0.31 16 25 C -0.05 0.22 2.98 71.24 0.21 0.44 16 26 O -0.54 0.67 12.88 -148.98 -1.92 -1.25 16 27 Si 0.75 -4.82 30.96 68.60 2.12 -2.70 16 28 N -0.54 2.05 5.41 -171.08 -0.93 1.13 16 29 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.08 0.34 6.46 -2.39 -0.02 0.33 16 31 H 0.09 -0.59 8.14 -2.39 -0.02 -0.60 16 32 H 0.41 -1.76 7.83 -92.71 -0.73 -2.48 16 33 H 0.11 -0.72 7.73 -2.39 -0.02 -0.74 16 34 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H 0.14 -0.26 7.60 -2.91 -0.02 -0.28 16 36 H 0.14 -0.33 7.60 -2.91 -0.02 -0.35 16 37 H 0.16 -1.30 8.06 -2.91 -0.02 -1.32 16 38 H 0.15 -1.27 6.65 -2.91 -0.02 -1.29 16 39 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.10 -0.53 6.31 -2.39 -0.02 -0.54 16 41 H 0.16 -0.55 7.70 -2.91 -0.02 -0.57 16 42 H 0.14 -0.93 7.96 -2.39 -0.02 -0.95 16 43 H 0.39 -2.44 8.70 -74.06 -0.64 -3.08 16 44 H -0.29 -0.60 7.11 99.48 0.71 0.11 16 45 H -0.27 0.93 7.11 99.48 0.71 1.64 16 46 H 0.43 -3.82 6.72 -92.70 -0.62 -4.44 16 Total: 0.00 -20.08 395.51 2.00 -18.08 By element: Atomic # 1 Polarization: -14.88 SS G_CDS: -0.87 Total: -15.75 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 3.73 Total: 11.26 kcal Atomic # 7 Polarization: 2.04 SS G_CDS: -3.26 Total: -1.22 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -1.98 Total: -8.71 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 2.26 Total: -0.96 kcal Atomic # 14 Polarization: -4.82 SS G_CDS: 2.12 Total: -2.70 kcal Total: -20.08 2.00 -18.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_9865296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.171 kcal (2) G-P(sol) polarization free energy of solvation -20.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds