Wall clock time and date at job start Mon Mar 8 2021 02:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86302 * 109.47071 * 2 1 4 4 C 1.50702 * 109.46760 * 240.00516 * 2 1 3 5 5 C 1.36446 * 120.29365 * 240.02564 * 4 2 1 6 6 C 1.40099 * 119.25374 * 179.72771 * 5 4 2 7 7 C 1.40855 * 132.86468 * 179.63725 * 6 5 4 8 8 C 1.46568 * 126.58056 * 0.69390 * 7 6 5 9 9 O 1.21727 * 119.99574 * 359.71577 * 8 7 6 10 10 N 1.34769 * 120.00107 * 179.70975 * 8 7 6 11 11 C 1.46501 * 120.00014 * 179.97438 * 10 8 7 12 12 H 1.09004 * 112.85074 * 336.20143 * 11 10 8 13 13 C 1.53782 * 113.61142 * 107.50467 * 11 10 8 14 14 C 1.53962 * 87.11063 * 89.18830 * 13 11 10 15 15 H 1.08993 * 113.61598 * 270.84305 * 14 13 11 16 16 C 1.50700 * 113.66521 * 139.88647 * 14 13 11 17 17 C 1.38205 * 119.97722 * 322.27892 * 16 14 13 18 18 C 1.38475 * 120.02365 * 179.76583 * 17 16 14 19 19 F 1.35107 * 120.01405 * 180.24866 * 18 17 16 20 20 C 1.38420 * 119.97686 * 0.52757 * 18 17 16 21 21 C 1.38421 * 119.94754 * 359.72907 * 20 18 17 22 22 F 1.35091 * 120.01217 * 180.02562 * 21 20 18 23 23 C 1.38214 * 119.97293 * 142.55256 * 16 14 13 24 24 C 1.53781 * 113.61619 * 205.00312 * 11 10 8 25 25 C 1.40555 * 106.83840 * 180.43670 * 7 6 5 26 26 N 1.30736 * 108.74661 * 0.22685 * 25 7 6 27 27 N 1.36576 * 120.22535 * 0.52407 * 6 5 4 28 28 C 1.36237 * 120.08477 * 359.47057 * 27 6 5 29 29 C 1.35189 * 120.70542 * 0.25277 * 28 27 6 30 30 H 0.96700 * 114.00694 * 59.99058 * 1 2 3 31 31 H 1.08997 * 109.47485 * 120.00886 * 2 1 3 32 32 H 1.48503 * 109.99680 * 60.00722 * 3 2 1 33 33 H 1.48506 * 109.99321 * 181.32042 * 3 2 1 34 34 H 1.07996 * 120.37688 * 359.97395 * 5 4 2 35 35 H 0.97001 * 120.00013 * 0.02562 * 10 8 7 36 36 H 1.08997 * 113.61668 * 203.66381 * 13 11 10 37 37 H 1.08998 * 113.61674 * 334.48890 * 13 11 10 38 38 H 1.08000 * 119.98682 * 359.97438 * 17 16 14 39 39 H 1.07996 * 120.02437 * 179.69889 * 20 18 17 40 40 H 1.07999 * 119.98318 * 359.97438 * 23 16 14 41 41 H 1.09002 * 113.61445 * 25.43587 * 24 11 10 42 42 H 1.09002 * 113.61408 * 156.25317 * 24 11 10 43 43 H 1.08000 * 125.62445 * 180.20644 * 25 7 6 44 44 H 1.08003 * 119.64918 * 180.23605 * 28 27 6 45 45 H 1.08000 * 119.84222 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.7156 -1.8206 -1.1125 6 6 3.1657 -2.4672 -2.2710 7 6 3.9733 -3.6016 -2.4827 8 6 4.5730 -4.4520 -1.4505 9 8 4.3936 -4.1986 -0.2735 10 7 5.3228 -5.5144 -1.8045 11 6 5.9226 -6.3640 -0.7727 12 1 6.0539 -5.8469 0.1779 13 6 5.2491 -7.7400 -0.6397 14 6 6.2424 -8.2424 -1.7033 15 1 5.8838 -8.1247 -2.7258 16 6 6.7797 -9.6226 -1.4252 17 6 7.0609 -10.0057 -0.1274 18 6 7.5500 -11.2754 0.1297 19 9 7.8201 -11.6514 1.3990 20 6 7.7676 -12.1573 -0.9147 21 6 7.4906 -11.7708 -2.2147 22 9 7.7020 -12.6306 -3.2349 23 6 6.9962 -10.5026 -2.4689 24 6 7.1800 -7.1127 -1.2454 25 6 4.0889 -3.7651 -3.8740 26 7 3.4167 -2.8130 -4.4662 27 7 2.8303 -1.9828 -3.5031 28 6 2.0466 -0.8736 -3.6107 29 6 1.5963 -0.2368 -2.5065 30 1 -0.3934 0.4418 -0.7649 31 1 1.7924 -0.5139 0.8899 32 1 1.5616 2.4678 1.2086 33 1 3.5346 1.7701 -0.0322 34 1 2.9832 -2.1990 -0.1370 35 1 5.4660 -5.7160 -2.7424 36 1 5.3879 -8.2015 0.3380 37 1 4.2102 -7.7514 -0.9694 38 1 6.8959 -9.3156 0.6868 39 1 8.1537 -13.1461 -0.7155 40 1 6.7798 -10.2007 -3.4830 41 1 7.7004 -6.6178 -2.0654 42 1 7.8474 -7.4013 -0.4334 43 1 4.6421 -4.5479 -4.3715 44 1 1.7825 -0.4989 -4.5886 45 1 0.9756 0.6412 -2.6080 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9705374_11618758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:24:05 Heat of formation + Delta-G solvation = 5.550934 kcal Electronic energy + Delta-G solvation = -33570.319197 eV Core-core repulsion = 28579.250857 eV Total energy + Delta-G solvation = -4991.068340 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.123 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -50.01501 -49.99275 -43.34753 -41.58217 -40.09130 -39.39333 -38.51855 -37.30442 -34.54281 -34.19721 -32.16838 -32.03580 -31.39244 -30.28072 -27.49073 -26.86816 -26.55209 -25.08810 -24.13653 -23.80196 -23.20008 -22.81829 -21.38862 -20.43406 -19.28010 -18.84268 -18.58197 -18.12472 -17.94383 -17.57737 -17.47028 -17.05686 -17.00326 -16.95903 -16.68799 -16.54948 -16.29878 -16.04132 -15.86156 -15.55641 -15.41099 -15.39507 -15.27975 -14.73127 -14.56528 -14.27305 -14.09944 -14.05939 -13.74156 -13.64340 -13.58560 -13.22983 -13.13783 -12.94967 -12.80653 -12.46632 -12.23186 -12.18580 -11.99781 -11.80125 -11.56258 -11.42492 -10.85784 -10.83348 -10.37193 -10.09968 -9.94259 -9.82802 -8.82277 -5.21307 -0.60916 -0.19663 -0.13814 -0.11258 0.94924 1.01608 1.08996 1.54654 1.84526 2.01380 2.13827 2.21071 2.53056 2.76196 3.00647 3.12826 3.18463 3.28854 3.30393 3.40469 3.46770 3.53508 3.60101 3.69385 3.77703 3.79814 3.84365 3.91887 3.94284 4.01337 4.07267 4.19007 4.27562 4.45476 4.48086 4.57161 4.63058 4.65220 4.68823 4.74047 4.78400 4.87779 4.91120 4.94192 5.00775 5.02802 5.10198 5.20795 5.25241 5.56619 5.59232 5.67994 6.25700 6.34526 6.53895 7.33313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.069 4.069 3 Si 0.699 3.301 4 C -0.067 4.067 5 C -0.097 4.097 6 C 0.171 3.829 7 C -0.318 4.318 8 C 0.605 3.395 9 O -0.547 6.547 10 N -0.712 5.712 11 C 0.125 3.875 12 H 0.108 0.892 13 C -0.144 4.144 14 C -0.077 4.077 15 H 0.106 0.894 16 C -0.012 4.012 17 C -0.163 4.163 18 C 0.136 3.864 19 F -0.129 7.129 20 C -0.198 4.198 21 C 0.135 3.865 22 F -0.130 7.130 23 C -0.161 4.161 24 C -0.135 4.135 25 C 0.121 3.879 26 N -0.312 5.312 27 N -0.267 5.267 28 C 0.122 3.878 29 C -0.157 4.157 30 H 0.378 0.622 31 H 0.123 0.877 32 H -0.246 1.246 33 H -0.254 1.254 34 H 0.161 0.839 35 H 0.399 0.601 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.198 0.802 44 H 0.180 0.820 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.452 4.641 -4.373 6.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.178 4.178 3 Si 0.598 3.402 4 C -0.073 4.073 5 C -0.117 4.117 6 C 0.050 3.950 7 C -0.333 4.333 8 C 0.394 3.606 9 O -0.425 6.425 10 N -0.363 5.363 11 C 0.019 3.981 12 H 0.126 0.874 13 C -0.183 4.183 14 C -0.095 4.095 15 H 0.124 0.876 16 C -0.012 4.012 17 C -0.182 4.182 18 C 0.117 3.883 19 F -0.108 7.108 20 C -0.217 4.217 21 C 0.116 3.884 22 F -0.108 7.108 23 C -0.180 4.180 24 C -0.173 4.173 25 C -0.061 4.061 26 N -0.132 5.132 27 N -0.031 5.031 28 C -0.004 4.004 29 C -0.178 4.178 30 H 0.226 0.774 31 H 0.140 0.860 32 H -0.170 1.170 33 H -0.179 1.179 34 H 0.179 0.821 35 H 0.233 0.767 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.161 0.839 41 H 0.099 0.901 42 H 0.119 0.881 43 H 0.215 0.785 44 H 0.197 0.803 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.274 5.472 -3.771 6.767 hybrid contribution 0.576 -1.631 0.290 1.754 sum -0.698 3.841 -3.482 5.231 Atomic orbital electron populations 1.86611 1.16294 1.81644 1.49103 1.25168 0.85604 1.10342 0.96716 0.95014 0.81482 0.75951 0.87792 1.20516 0.95850 0.94974 0.95941 1.20708 0.98362 0.94473 0.98114 1.19264 0.95520 0.94047 0.86203 1.19580 1.16194 1.03956 0.93533 1.16818 0.77251 0.79195 0.87320 1.90794 1.61141 1.72010 1.18581 1.45349 1.52841 1.28636 1.09499 1.21777 0.93004 0.90341 0.92971 0.87354 1.23634 0.99435 0.95872 0.99357 1.21723 0.97479 0.89619 1.00697 0.87633 1.19323 0.95236 0.95205 0.91428 1.21073 1.03391 0.95479 0.98260 1.17256 0.98867 0.93279 0.78937 1.91566 1.91257 1.91632 1.36297 1.21087 1.07247 1.02354 0.91061 1.17279 0.99151 0.88095 0.83920 1.91558 1.92336 1.69124 1.57780 1.21121 1.03495 0.92373 1.01034 1.23451 0.96269 0.95211 1.02399 1.24055 0.94322 0.95761 0.91917 1.77643 1.18522 1.06339 1.10704 1.46097 1.32215 1.18986 1.05758 1.21607 0.91757 0.85069 1.01953 1.20729 1.04179 1.02672 0.90222 0.77400 0.85970 1.17047 1.17855 0.82127 0.76668 0.88505 0.90241 0.83750 0.83349 0.83933 0.90051 0.88123 0.78508 0.80309 0.81541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.75 12.87 -35.23 -0.45 0.29 16 2 C -0.07 0.11 2.84 36.01 0.10 0.22 16 3 Si 0.70 -1.79 31.96 -169.99 -5.43 -7.23 16 4 C -0.07 0.08 4.53 -104.55 -0.47 -0.40 16 5 C -0.10 -0.15 9.35 -39.53 -0.37 -0.52 16 6 C 0.17 0.41 6.76 -84.07 -0.57 -0.16 16 7 C -0.32 -0.61 6.17 -104.68 -0.65 -1.25 16 8 C 0.60 1.44 7.78 -12.91 -0.10 1.34 16 9 O -0.55 -3.17 15.30 5.16 0.08 -3.09 16 10 N -0.71 0.83 5.25 -54.35 -0.29 0.55 16 11 C 0.12 -0.18 4.32 -67.12 -0.29 -0.47 16 12 H 0.11 0.04 7.46 -51.93 -0.39 -0.35 16 13 C -0.14 0.29 7.26 -25.82 -0.19 0.10 16 14 C -0.08 0.24 3.87 -90.86 -0.35 -0.11 16 15 H 0.11 -0.46 8.09 -51.93 -0.42 -0.88 16 16 C -0.01 0.02 5.29 -104.64 -0.55 -0.54 16 17 C -0.16 0.12 8.57 -39.51 -0.34 -0.21 16 18 C 0.14 0.10 7.30 -39.43 -0.29 -0.18 16 19 F -0.13 -0.26 17.27 2.25 0.04 -0.22 16 20 C -0.20 -0.13 10.01 -39.45 -0.39 -0.52 16 21 C 0.14 0.10 7.30 -39.43 -0.29 -0.19 16 22 F -0.13 -0.25 17.27 2.25 0.04 -0.21 16 23 C -0.16 0.14 9.69 -39.50 -0.38 -0.25 16 24 C -0.14 0.43 7.28 -25.92 -0.19 0.24 16 25 C 0.12 0.00 11.44 -17.14 -0.20 -0.20 16 26 N -0.31 -0.58 12.57 30.75 0.39 -0.20 16 27 N -0.27 -0.34 3.86 -10.54 -0.04 -0.38 16 28 C 0.12 -0.27 11.17 -16.68 -0.19 -0.45 16 29 C -0.16 0.59 8.38 -39.95 -0.33 0.25 16 30 H 0.38 -2.32 8.08 45.56 0.37 -1.96 16 31 H 0.12 -0.10 7.71 -51.93 -0.40 -0.51 16 32 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 33 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 34 H 0.16 0.37 7.01 -52.49 -0.37 0.00 16 35 H 0.40 -1.59 7.62 -40.82 -0.31 -1.90 16 36 H 0.10 -0.22 6.32 -51.93 -0.33 -0.55 16 37 H 0.08 -0.08 8.14 -51.93 -0.42 -0.51 16 38 H 0.14 -0.31 6.67 -52.49 -0.35 -0.66 16 39 H 0.15 -0.05 8.06 -52.49 -0.42 -0.48 16 40 H 0.14 -0.37 8.05 -52.49 -0.42 -0.79 16 41 H 0.08 -0.30 8.14 -51.93 -0.42 -0.73 16 42 H 0.10 -0.33 7.71 -51.93 -0.40 -0.73 16 43 H 0.20 -0.86 7.46 -52.49 -0.39 -1.25 16 44 H 0.18 -0.93 8.06 -52.48 -0.42 -1.36 16 45 H 0.17 -1.39 7.31 -52.49 -0.38 -1.77 16 LS Contribution 391.80 15.07 5.90 5.90 Total: 0.00 -11.36 391.80 -10.48 -21.84 By element: Atomic # 1 Polarization: -9.27 SS G_CDS: -4.68 Total: -13.95 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -6.04 Total: -3.30 kcal Atomic # 7 Polarization: -0.09 SS G_CDS: 0.06 Total: -0.03 kcal Atomic # 8 Polarization: -2.42 SS G_CDS: -0.37 Total: -2.80 kcal Atomic # 9 Polarization: -0.51 SS G_CDS: 0.08 Total: -0.44 kcal Atomic # 14 Polarization: -1.79 SS G_CDS: -5.43 Total: -7.23 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -11.36 -10.48 -21.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705374_11618758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.394 kcal (2) G-P(sol) polarization free energy of solvation -11.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds