Wall clock time and date at job start Mon Mar 8 2021 02:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86293 * 109.47275 * 2 1 4 4 C 1.50703 * 109.46511 * 120.00035 * 2 1 3 5 5 C 1.38235 * 120.00292 * 65.00011 * 4 2 1 6 6 C 1.38230 * 119.99899 * 179.97438 * 5 4 2 7 7 C 1.38235 * 120.00326 * 359.95697 * 6 5 4 8 8 C 1.50702 * 120.00236 * 179.72466 * 7 6 5 9 9 C 1.50690 * 109.47286 * 89.99933 * 8 7 6 10 10 O 1.21284 * 120.00243 * 0.02562 * 9 8 7 11 11 N 1.34785 * 119.99981 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99813 * 179.97438 * 11 9 8 13 13 H 1.09001 * 112.85370 * 25.33716 * 12 11 9 14 14 C 1.53781 * 113.61100 * 156.52883 * 12 11 9 15 15 C 1.53781 * 87.07833 * 89.11938 * 14 12 11 16 16 H 1.09002 * 113.61556 * 270.79544 * 15 14 12 17 17 C 1.50701 * 113.61776 * 139.98249 * 15 14 12 18 18 C 1.38214 * 119.97099 * 299.72687 * 17 15 14 19 19 C 1.38482 * 120.02207 * 179.72326 * 18 17 15 20 20 F 1.35098 * 120.00872 * 180.25273 * 19 18 17 21 21 C 1.38416 * 119.97159 * 0.54522 * 19 18 17 22 22 C 1.38420 * 119.95421 * 359.73085 * 21 19 18 23 23 F 1.35100 * 120.01137 * 180.02562 * 22 21 19 24 24 C 1.38209 * 119.97702 * 119.99667 * 17 15 14 25 25 C 1.53777 * 113.61783 * 254.13986 * 12 11 9 26 26 C 1.38234 * 119.99814 * 359.97438 * 7 6 5 27 27 C 1.38234 * 119.99503 * 244.97304 * 4 2 1 28 28 H 0.96695 * 114.00385 * 300.00218 * 1 2 3 29 29 H 1.09002 * 109.46995 * 239.99679 * 2 1 3 30 30 H 1.48505 * 109.99942 * 299.99577 * 3 2 1 31 31 H 1.48503 * 110.00286 * 61.31376 * 3 2 1 32 32 H 1.08001 * 119.99730 * 359.97438 * 5 4 2 33 33 H 1.08000 * 120.00376 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.46871 * 209.99878 * 8 7 6 35 35 H 1.09001 * 109.47017 * 329.99216 * 8 7 6 36 36 H 0.97001 * 119.99796 * 0.02562 * 11 9 8 37 37 H 1.08997 * 113.61639 * 203.66208 * 14 12 11 38 38 H 1.09003 * 113.61658 * 334.57144 * 14 12 11 39 39 H 1.07995 * 119.99021 * 359.97438 * 18 17 15 40 40 H 1.08000 * 120.01962 * 179.70262 * 21 19 18 41 41 H 1.08000 * 119.98926 * 0.02562 * 24 17 15 42 42 H 1.09002 * 113.61443 * 25.42824 * 25 12 11 43 43 H 1.09000 * 113.61698 * 156.34159 * 25 12 11 44 44 H 1.08001 * 120.00279 * 180.02562 * 26 7 6 45 45 H 1.07997 * 120.00470 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7105 1.2305 5 6 1.6845 -2.0602 1.3985 6 6 2.1457 -2.7119 2.5269 7 6 2.8542 -2.0141 3.4871 8 6 3.3516 -2.7233 4.7203 9 6 4.7312 -3.2717 4.4624 10 8 5.2590 -3.1030 3.3835 11 7 5.3792 -3.9489 5.4310 12 6 6.7202 -4.4826 5.1800 13 1 7.2562 -3.9337 4.4058 14 6 7.5439 -4.7053 6.4594 15 6 6.9343 -6.1162 6.5120 16 1 5.9958 -6.1661 7.0641 17 6 7.9149 -7.1824 6.9275 18 6 9.0496 -7.4094 6.1716 19 6 9.9542 -8.3850 6.5556 20 9 11.0658 -8.6032 5.8193 21 6 9.7161 -9.1406 7.6906 22 6 8.5766 -8.9163 8.4437 23 9 8.3433 -9.6528 9.5520 24 6 7.6762 -7.9364 8.0610 25 6 6.7500 -6.0078 4.9864 26 6 3.1021 -0.6647 3.3185 27 6 2.6390 -0.0124 2.1910 28 1 -0.3934 0.4417 0.7650 29 1 1.7923 -0.5139 -0.8900 30 1 1.5616 2.4678 -1.2086 31 1 1.5879 2.4586 1.2242 32 1 1.1315 -2.6055 0.6479 33 1 1.9526 -3.7663 2.6584 34 1 3.3897 -2.0207 5.5529 35 1 2.6752 -3.5418 4.9664 36 1 4.9572 -4.0835 6.2940 37 1 8.6208 -4.7011 6.2917 38 1 7.2413 -4.0677 7.2901 39 1 9.2327 -6.8230 5.2834 40 1 10.4187 -9.9050 7.9881 41 1 6.7868 -7.7614 8.6482 42 1 5.8069 -6.4211 4.6287 43 1 7.6104 -6.3589 4.4167 44 1 3.6561 -0.1195 4.0684 45 1 2.8325 1.0419 2.0595 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705374_12335836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:24:21 Heat of formation + Delta-G solvation = -74.993313 kcal Electronic energy + Delta-G solvation = -29977.345626 eV Core-core repulsion = 25370.088728 eV Total energy + Delta-G solvation = -4607.256898 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.132 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -50.08303 -50.05878 -41.61535 -40.80397 -39.95989 -38.61052 -37.72478 -34.54989 -33.94417 -31.97833 -31.90501 -31.34546 -29.68057 -26.68072 -26.66435 -25.58837 -23.96259 -23.80462 -23.09139 -22.32126 -21.34053 -20.33396 -18.98642 -18.55879 -18.12253 -18.01490 -17.43592 -17.29449 -17.05272 -16.88356 -16.76962 -16.52214 -16.37900 -16.19016 -16.17176 -15.79206 -15.47540 -15.33474 -15.21517 -14.78216 -14.58070 -14.45322 -14.04967 -13.96779 -13.69101 -13.48558 -13.25432 -13.09719 -13.09282 -12.94319 -12.79086 -12.70898 -12.26394 -12.07661 -11.97408 -11.66533 -11.59126 -11.27203 -10.93904 -10.60202 -10.03352 -9.89189 -9.85508 -9.81254 -9.61090 -4.93007 -0.10401 -0.08695 0.25728 0.47479 1.29669 1.56601 1.68194 1.91718 2.17703 2.25525 2.77382 2.80258 3.27068 3.39886 3.41527 3.59530 3.63805 3.69607 3.77259 3.81301 3.90897 3.91572 3.95350 4.06280 4.07541 4.09172 4.15001 4.38293 4.49218 4.56173 4.63014 4.65328 4.73737 4.74631 4.77098 4.79660 4.81280 4.90888 4.97486 4.98921 5.05557 5.06557 5.10803 5.18056 5.36705 5.40053 5.55354 5.61212 5.66954 5.71902 6.03927 6.47354 6.61527 7.33716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.084 4.084 3 Si 0.764 3.236 4 C -0.125 4.125 5 C -0.108 4.108 6 C -0.116 4.116 7 C -0.071 4.071 8 C -0.098 4.098 9 C 0.516 3.484 10 O -0.576 6.576 11 N -0.702 5.702 12 C 0.116 3.884 13 H 0.082 0.918 14 C -0.124 4.124 15 C -0.066 4.066 16 H 0.128 0.872 17 C -0.009 4.009 18 C -0.160 4.160 19 C 0.117 3.883 20 F -0.141 7.141 21 C -0.206 4.206 22 C 0.117 3.883 23 F -0.140 7.140 24 C -0.154 4.154 25 C -0.145 4.145 26 C -0.110 4.110 27 C -0.125 4.125 28 H 0.386 0.614 29 H 0.118 0.882 30 H -0.302 1.302 31 H -0.277 1.277 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.419 0.581 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.156 0.844 40 H 0.150 0.850 41 H 0.164 0.836 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.142 0.858 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 1.289 6.054 6.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.193 4.193 3 Si 0.669 3.331 4 C -0.126 4.126 5 C -0.126 4.126 6 C -0.134 4.134 7 C -0.071 4.071 8 C -0.138 4.138 9 C 0.304 3.696 10 O -0.455 6.455 11 N -0.354 5.354 12 C 0.011 3.989 13 H 0.101 0.899 14 C -0.162 4.162 15 C -0.084 4.084 16 H 0.146 0.854 17 C -0.010 4.010 18 C -0.179 4.179 19 C 0.098 3.902 20 F -0.120 7.120 21 C -0.226 4.226 22 C 0.098 3.902 23 F -0.119 7.119 24 C -0.173 4.173 25 C -0.184 4.184 26 C -0.128 4.128 27 C -0.143 4.143 28 H 0.235 0.765 29 H 0.136 0.864 30 H -0.231 1.231 31 H -0.204 1.204 32 H 0.140 0.860 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.256 0.744 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.182 0.818 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.160 0.840 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.512 1.884 4.770 5.154 hybrid contribution -0.823 -0.854 0.645 1.351 sum -1.336 1.029 5.416 5.672 Atomic orbital electron populations 1.86563 1.18518 1.80446 1.50150 1.25226 0.83439 1.11996 0.98664 0.93934 0.90595 0.72063 0.76504 1.20312 1.00292 0.95030 0.96935 1.21100 0.99371 0.94184 0.97978 1.21242 0.98048 1.00264 0.93837 1.19601 0.97364 0.93971 0.96170 1.20765 0.92882 1.02777 0.97340 1.20977 0.87962 0.77096 0.83614 1.90755 1.69221 1.59244 1.26277 1.45576 1.17065 1.55788 1.16989 1.21770 0.83909 0.94278 0.98992 0.89941 1.23380 1.00587 0.94868 0.97366 1.21776 0.97790 0.91955 0.96836 0.85444 1.19500 0.93984 0.95227 0.92250 1.21282 0.94565 0.99100 1.02929 1.17444 0.84567 0.97376 0.90843 1.91530 1.50503 1.94064 1.75878 1.21180 1.00069 1.04389 0.96928 1.17470 0.95323 0.92839 0.84579 1.91532 1.94377 1.75676 1.50273 1.21375 1.00985 0.95866 0.99034 1.23628 1.03336 0.96027 0.95366 1.21234 0.99099 0.94352 0.98118 1.21197 0.98537 1.00258 0.94297 0.76515 0.86422 1.23073 1.20363 0.85982 0.85012 0.84887 0.85285 0.74359 0.88247 0.88591 0.82665 0.83231 0.81823 0.90923 0.88794 0.84037 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.47 12.83 -148.98 -1.91 -4.39 16 2 C -0.08 -0.17 2.80 71.24 0.20 0.03 16 3 Si 0.76 0.00 29.88 68.60 2.05 2.05 16 4 C -0.13 -0.35 5.35 -19.87 -0.11 -0.46 16 5 C -0.11 -0.41 9.69 22.27 0.22 -0.19 16 6 C -0.12 -0.21 9.70 22.27 0.22 0.00 16 7 C -0.07 0.02 4.37 -19.87 -0.09 -0.07 16 8 C -0.10 0.72 5.83 29.10 0.17 0.88 16 9 C 0.52 -0.93 7.82 87.65 0.69 -0.25 16 10 O -0.58 -5.12 15.65 -3.04 -0.05 -5.17 16 11 N -0.70 5.58 5.26 -440.04 -2.32 3.26 16 12 C 0.12 -0.69 4.29 45.52 0.20 -0.49 16 13 H 0.08 -0.03 7.50 -2.39 -0.02 -0.05 16 14 C -0.12 1.23 7.29 31.12 0.23 1.45 16 15 C -0.07 0.64 3.87 -10.92 -0.04 0.60 16 16 H 0.13 -1.75 8.09 -2.39 -0.02 -1.77 16 17 C -0.01 0.05 5.29 -19.88 -0.11 -0.05 16 18 C -0.16 0.45 8.60 22.32 0.19 0.64 16 19 C 0.12 0.15 7.30 22.37 0.16 0.31 16 20 F -0.14 -0.62 17.27 44.97 0.78 0.15 16 21 C -0.21 -0.26 10.01 22.36 0.22 -0.03 16 22 C 0.12 0.06 7.30 22.37 0.16 0.23 16 23 F -0.14 -0.46 17.27 44.97 0.78 0.31 16 24 C -0.15 0.63 9.69 22.32 0.22 0.85 16 25 C -0.14 0.95 7.27 31.21 0.23 1.18 16 26 C -0.11 -0.01 9.70 22.27 0.22 0.21 16 27 C -0.13 -0.13 8.67 22.27 0.19 0.06 16 28 H 0.39 -0.57 8.70 -74.06 -0.64 -1.21 16 29 H 0.12 0.16 7.96 -2.39 -0.02 0.14 16 30 H -0.30 -2.26 7.11 99.48 0.71 -1.55 16 31 H -0.28 -0.74 7.01 99.48 0.70 -0.04 16 32 H 0.12 0.40 8.06 -2.91 -0.02 0.38 16 33 H 0.13 -0.17 8.06 -2.91 -0.02 -0.20 16 34 H 0.13 -1.69 8.08 -2.39 -0.02 -1.71 16 35 H 0.13 -1.55 8.09 -2.39 -0.02 -1.57 16 36 H 0.42 -6.20 8.70 -92.71 -0.81 -7.00 16 37 H 0.10 -0.90 7.73 -2.39 -0.02 -0.92 16 38 H 0.10 -1.17 8.14 -2.39 -0.02 -1.19 16 39 H 0.16 -0.86 6.64 -2.91 -0.02 -0.88 16 40 H 0.15 -0.01 8.06 -2.91 -0.02 -0.03 16 41 H 0.16 -1.42 8.05 -2.91 -0.02 -1.45 16 42 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 43 H 0.09 -0.55 6.30 -2.39 -0.02 -0.57 16 44 H 0.14 -0.60 8.06 -2.91 -0.02 -0.63 16 45 H 0.14 -0.33 4.85 -2.91 -0.01 -0.34 16 Total: 0.00 -21.96 386.33 2.13 -19.83 By element: Atomic # 1 Polarization: -20.58 SS G_CDS: -0.36 Total: -20.95 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 3.16 Total: 4.89 kcal Atomic # 7 Polarization: 5.58 SS G_CDS: -2.32 Total: 3.26 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -1.96 Total: -9.55 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 1.55 Total: 0.47 kcal Atomic # 14 Polarization: 0.00 SS G_CDS: 2.05 Total: 2.05 kcal Total: -21.96 2.13 -19.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705374_12335836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.159 kcal (2) G-P(sol) polarization free energy of solvation -21.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds