Wall clock time and date at job start Mon Mar 8 2021 02:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86299 * 109.47098 * 2 1 4 4 C 1.50697 * 109.47170 * 120.00107 * 2 1 3 5 5 C 1.37813 * 119.94359 * 15.01941 * 4 2 1 6 6 C 1.39664 * 119.88359 * 179.97438 * 5 4 2 7 7 C 1.47724 * 120.12189 * 179.97438 * 6 5 4 8 8 O 1.21566 * 119.99706 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00098 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99908 * 180.02562 * 9 7 6 11 11 H 1.08995 * 112.84869 * 25.33421 * 10 9 7 12 12 C 1.53783 * 113.61058 * 156.52893 * 10 9 7 13 13 C 1.53781 * 87.07792 * 89.12034 * 12 10 9 14 14 H 1.09001 * 113.61108 * 270.87546 * 13 12 10 15 15 C 1.50699 * 113.61654 * 140.06254 * 13 12 10 16 16 C 1.38204 * 119.97679 * 299.72681 * 15 13 12 17 17 C 1.38471 * 120.02948 * 179.72463 * 16 15 13 18 18 F 1.35105 * 120.01836 * 180.29323 * 17 16 15 19 19 C 1.38427 * 119.97267 * 0.54634 * 17 16 15 20 20 C 1.38420 * 119.94530 * 359.72489 * 19 17 16 21 21 F 1.35100 * 120.00796 * 179.97438 * 20 19 17 22 22 C 1.38210 * 119.97688 * 119.99473 * 15 13 12 23 23 C 1.53785 * 113.61542 * 254.13813 * 10 9 7 24 24 C 1.39634 * 119.76284 * 0.02562 * 6 5 4 25 25 C 1.37861 * 119.87633 * 0.02562 * 24 6 5 26 26 C 1.38628 * 120.11975 * 359.97438 * 25 24 6 27 27 F 1.35100 * 119.87710 * 180.27862 * 26 25 24 28 28 H 0.96699 * 114.00032 * 299.99772 * 1 2 3 29 29 H 1.09000 * 109.47193 * 240.00461 * 2 1 3 30 30 H 1.48501 * 110.00062 * 300.00301 * 3 2 1 31 31 H 1.48499 * 110.00303 * 61.31826 * 3 2 1 32 32 H 1.08000 * 120.05640 * 0.02562 * 5 4 2 33 33 H 0.97003 * 119.99966 * 0.02562 * 9 7 6 34 34 H 1.09004 * 113.60734 * 203.66126 * 12 10 9 35 35 H 1.08988 * 113.61973 * 334.48469 * 12 10 9 36 36 H 1.08001 * 119.98303 * 359.97438 * 16 15 13 37 37 H 1.07995 * 120.02449 * 179.70542 * 19 17 16 38 38 H 1.08004 * 119.98778 * 0.02562 * 22 15 13 39 39 H 1.08999 * 113.61193 * 25.42870 * 23 10 9 40 40 H 1.08995 * 113.60937 * 156.33452 * 23 10 9 41 41 H 1.08003 * 120.06111 * 179.97438 * 24 6 5 42 42 H 1.08000 * 119.93433 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.0732 -1.4949 1.9703 6 6 1.5402 -2.1532 3.1101 7 6 0.6248 -2.9950 3.9074 8 8 -0.5372 -3.1162 3.5715 9 7 1.0779 -3.6287 5.0071 10 6 0.1702 -4.4640 5.7975 11 1 -0.6642 -4.8522 5.2134 12 6 0.8898 -5.5367 6.6320 13 6 0.9860 -4.4879 7.7526 14 1 1.8844 -3.8730 7.6992 15 6 0.7436 -5.0513 9.1292 16 6 -0.4657 -5.6505 9.4270 17 6 -0.6875 -6.1736 10.6897 18 9 -1.8675 -6.7646 10.9788 19 6 0.2984 -6.0861 11.6575 20 6 1.5071 -5.4807 11.3598 21 9 2.4700 -5.3942 12.3035 22 6 1.7287 -4.9634 10.0946 23 6 -0.2554 -3.8224 7.1287 24 6 2.8753 -2.0119 3.4940 25 6 3.7249 -1.2238 2.7473 26 6 3.2560 -0.5727 1.6168 27 9 4.0942 0.1939 0.8854 28 1 -0.3933 0.4417 0.7651 29 1 1.7923 -0.5138 -0.8900 30 1 1.5614 2.4679 -1.2085 31 1 1.5879 2.4586 1.2242 32 1 0.0416 -1.6012 1.6687 33 1 2.0051 -3.5318 5.2754 34 1 0.2591 -6.3890 6.8847 35 1 1.8565 -5.8316 6.2241 36 1 -1.2365 -5.7144 8.6732 37 1 0.1246 -6.4896 12.6440 38 1 2.6716 -4.4907 9.8623 39 1 -0.2117 -2.7333 7.1221 40 1 -1.1985 -4.2070 7.5168 41 1 3.2414 -2.5185 4.3748 42 1 4.7578 -1.1142 3.0431 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705374_12496548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:25:19 Heat of formation + Delta-G solvation = -111.854693 kcal Electronic energy + Delta-G solvation = -30911.882325 eV Core-core repulsion = 25989.110642 eV Total energy + Delta-G solvation = -4922.771684 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.107 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -50.25896 -50.07972 -50.05307 -41.79994 -40.84316 -39.72179 -38.58425 -37.79913 -34.79898 -32.81387 -32.15670 -31.58511 -31.28018 -27.29382 -26.70613 -26.60387 -24.98317 -23.91833 -23.24429 -22.95688 -21.68958 -20.45340 -19.36981 -18.96665 -18.53819 -18.13768 -17.94830 -17.75796 -17.41864 -17.05640 -17.04880 -16.91356 -16.69127 -16.37507 -16.19657 -16.14926 -15.82383 -15.62367 -15.44341 -15.34830 -15.12668 -14.67050 -14.31909 -14.21772 -14.07047 -13.91119 -13.70579 -13.51017 -13.34645 -13.07658 -12.93460 -12.84756 -12.76205 -12.46766 -12.08682 -11.96335 -11.70404 -11.31256 -11.24488 -11.00599 -10.23304 -10.01422 -9.90369 -9.81214 -9.72113 -4.84674 -0.48275 -0.10205 -0.08233 0.03773 1.16924 1.50156 1.61350 1.86068 1.98365 2.25619 2.59668 2.77961 2.97313 3.16690 3.26440 3.33493 3.38817 3.56352 3.58949 3.68123 3.70089 3.77821 3.90968 3.92433 4.00754 4.07586 4.12621 4.14106 4.42262 4.56643 4.62619 4.72969 4.76136 4.78488 4.79141 4.82186 4.85748 4.92093 4.97705 4.97903 5.03890 5.05139 5.09954 5.15162 5.32085 5.57407 5.64846 5.72031 6.32799 6.44042 7.11711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.080 4.080 3 Si 0.745 3.255 4 C -0.164 4.164 5 C -0.040 4.040 6 C -0.153 4.153 7 C 0.561 3.439 8 O -0.578 6.578 9 N -0.691 5.691 10 C 0.113 3.887 11 H 0.085 0.915 12 C -0.123 4.123 13 C -0.065 4.065 14 H 0.130 0.870 15 C -0.009 4.009 16 C -0.160 4.160 17 C 0.116 3.884 18 F -0.142 7.142 19 C -0.206 4.206 20 C 0.117 3.883 21 F -0.140 7.140 22 C -0.153 4.153 23 C -0.145 4.145 24 C -0.045 4.045 25 C -0.142 4.142 26 C 0.118 3.882 27 F -0.101 7.101 28 H 0.387 0.613 29 H 0.133 0.867 30 H -0.291 1.291 31 H -0.284 1.284 32 H 0.133 0.867 33 H 0.418 0.582 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.166 0.834 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.178 0.822 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.089 -0.246 1.689 8.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.188 4.188 3 Si 0.648 3.352 4 C -0.165 4.165 5 C -0.059 4.059 6 C -0.157 4.157 7 C 0.350 3.650 8 O -0.458 6.458 9 N -0.343 5.343 10 C 0.008 3.992 11 H 0.104 0.896 12 C -0.161 4.161 13 C -0.083 4.083 14 H 0.148 0.852 15 C -0.009 4.009 16 C -0.179 4.179 17 C 0.097 3.903 18 F -0.120 7.120 19 C -0.226 4.226 20 C 0.098 3.902 21 F -0.118 7.118 22 C -0.171 4.171 23 C -0.183 4.183 24 C -0.063 4.063 25 C -0.160 4.160 26 C 0.098 3.902 27 F -0.080 7.080 28 H 0.236 0.764 29 H 0.151 0.849 30 H -0.219 1.219 31 H -0.210 1.210 32 H 0.151 0.849 33 H 0.257 0.743 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.173 0.827 37 H 0.167 0.833 38 H 0.184 0.816 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.195 0.805 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 7.173 0.171 0.952 7.238 hybrid contribution -1.237 -0.155 0.869 1.520 sum 5.936 0.017 1.821 6.209 Atomic orbital electron populations 1.86573 1.17986 1.80446 1.50323 1.25057 0.83940 1.11462 0.98354 0.94133 0.91557 0.71982 0.77487 1.20296 0.93662 1.02533 1.00037 1.20876 1.00373 0.92373 0.92307 1.19945 0.95398 1.02389 0.97933 1.18384 0.86833 0.79199 0.80600 1.90808 1.19879 1.64192 1.70953 1.45407 1.14726 1.48319 1.25833 1.21876 0.93740 0.92183 0.91440 0.89634 1.23396 1.02777 0.96327 0.93610 1.21788 1.00437 0.97931 0.88175 0.85178 1.19471 0.91259 0.94499 0.95703 1.21281 0.99934 1.01160 0.95514 1.17453 0.81585 0.96826 0.94438 1.91531 1.44808 1.81609 1.94089 1.21187 0.93514 1.05931 1.01963 1.17470 0.85717 0.99838 0.87187 1.91533 1.61938 1.94277 1.64099 1.21381 1.02405 1.02577 0.90751 1.23640 0.98440 1.01224 0.95010 1.21553 0.90200 0.95223 0.99333 1.21475 1.03262 0.97702 0.93565 1.17829 0.86770 0.93430 0.92125 1.91200 1.69392 1.71429 1.75935 0.76367 0.84942 1.21909 1.21029 0.84906 0.74262 0.87964 0.88323 0.82656 0.83299 0.81636 0.90796 0.88503 0.80520 0.80176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.22 11.64 -148.98 -1.73 -3.95 16 2 C -0.08 -0.06 2.96 71.24 0.21 0.15 16 3 Si 0.74 0.44 29.58 68.60 2.03 2.47 16 4 C -0.16 0.07 5.13 -19.86 -0.10 -0.03 16 5 C -0.04 -0.07 8.78 22.51 0.20 0.13 16 6 C -0.15 0.29 5.87 -20.09 -0.12 0.17 16 7 C 0.56 0.70 7.77 86.75 0.67 1.38 16 8 O -0.58 -6.45 15.96 -3.93 -0.06 -6.51 16 9 N -0.69 4.70 5.21 -443.02 -2.31 2.39 16 10 C 0.11 -0.66 4.30 45.52 0.20 -0.47 16 11 H 0.09 -0.03 7.50 -2.39 -0.02 -0.05 16 12 C -0.12 1.30 7.29 31.12 0.23 1.52 16 13 C -0.07 0.69 3.86 -10.92 -0.04 0.65 16 14 H 0.13 -1.96 8.09 -2.39 -0.02 -1.98 16 15 C -0.01 0.06 5.29 -19.88 -0.11 -0.05 16 16 C -0.16 0.54 8.61 22.32 0.19 0.73 16 17 C 0.12 0.11 7.30 22.37 0.16 0.27 16 18 F -0.14 -0.60 17.27 44.97 0.78 0.18 16 19 C -0.21 -0.18 10.01 22.36 0.22 0.05 16 20 C 0.12 -0.01 7.30 22.37 0.16 0.15 16 21 F -0.14 -0.38 17.27 44.97 0.78 0.39 16 22 C -0.15 0.75 9.69 22.32 0.22 0.97 16 23 C -0.14 1.01 7.27 31.21 0.23 1.24 16 24 C -0.04 0.43 9.54 22.52 0.21 0.64 16 25 C -0.14 1.28 10.01 22.27 0.22 1.50 16 26 C 0.12 -0.48 6.66 22.47 0.15 -0.33 16 27 F -0.10 0.48 13.71 44.97 0.62 1.10 16 28 H 0.39 -0.44 8.43 -74.06 -0.62 -1.07 16 29 H 0.13 -0.12 7.96 -2.39 -0.02 -0.14 16 30 H -0.29 -2.18 7.11 99.48 0.71 -1.47 16 31 H -0.28 -1.44 7.11 99.48 0.71 -0.74 16 32 H 0.13 0.71 6.66 -2.91 -0.02 0.69 16 33 H 0.42 -6.01 6.73 -92.71 -0.62 -6.64 16 34 H 0.10 -1.00 7.73 -2.38 -0.02 -1.02 16 35 H 0.10 -1.29 8.14 -2.39 -0.02 -1.31 16 36 H 0.16 -0.95 6.65 -2.91 -0.02 -0.97 16 37 H 0.15 -0.05 8.06 -2.91 -0.02 -0.07 16 38 H 0.17 -1.63 8.05 -2.91 -0.02 -1.66 16 39 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.10 -0.63 6.31 -2.39 -0.02 -0.65 16 41 H 0.18 -3.18 6.40 -2.91 -0.02 -3.20 16 42 H 0.18 -2.70 8.06 -2.91 -0.02 -2.73 16 Total: 0.00 -21.57 365.40 2.91 -18.66 By element: Atomic # 1 Polarization: -23.32 SS G_CDS: -0.09 Total: -23.41 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 2.91 Total: 8.68 kcal Atomic # 7 Polarization: 4.70 SS G_CDS: -2.31 Total: 2.39 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -1.80 Total: -10.46 kcal Atomic # 9 Polarization: -0.50 SS G_CDS: 2.17 Total: 1.67 kcal Atomic # 14 Polarization: 0.44 SS G_CDS: 2.03 Total: 2.47 kcal Total: -21.57 2.91 -18.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705374_12496548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.197 kcal (2) G-P(sol) polarization free energy of solvation -21.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds