Wall clock time and date at job start Mon Mar 8 2021 02:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.46927 * 2 1 4 4 C 1.50703 * 109.47171 * 119.99815 * 2 1 3 5 5 C 1.35455 * 125.56044 * 245.02790 * 4 2 1 6 6 C 1.39842 * 107.86027 * 179.97438 * 5 4 2 7 7 C 1.37872 * 107.08616 * 0.02562 * 6 5 4 8 8 C 1.46676 * 126.23297 * 180.02562 * 7 6 5 9 9 O 1.21693 * 119.99740 * 359.97107 * 8 7 6 10 10 N 1.34773 * 120.00325 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00379 * 179.97438 * 10 8 7 12 12 H 1.09001 * 112.84495 * 23.80505 * 11 10 8 13 13 C 1.53780 * 113.61306 * 154.99910 * 11 10 8 14 14 C 1.53775 * 87.08178 * 89.11925 * 13 11 10 15 15 H 1.09004 * 113.61676 * 270.88473 * 14 13 11 16 16 C 1.50698 * 113.61739 * 140.06339 * 14 13 11 17 17 C 1.38211 * 119.97311 * 299.72218 * 16 14 13 18 18 C 1.38479 * 120.02236 * 179.76506 * 17 16 14 19 19 F 1.35096 * 120.01185 * 180.24805 * 18 17 16 20 20 C 1.38422 * 119.97254 * 0.53288 * 18 17 16 21 21 C 1.38416 * 119.95224 * 359.72289 * 20 18 17 22 22 F 1.35103 * 120.01315 * 180.02562 * 21 20 18 23 23 C 1.38212 * 119.97259 * 119.99772 * 16 14 13 24 24 C 1.53776 * 87.08378 * 25.42931 * 14 13 11 25 25 N 1.35536 * 125.56446 * 64.72018 * 4 2 1 26 26 H 0.96701 * 113.99881 * 60.00555 * 1 2 3 27 27 H 1.09002 * 109.47259 * 239.99966 * 2 1 3 28 28 H 1.48493 * 110.00286 * 59.99740 * 3 2 1 29 29 H 1.48505 * 109.99793 * 181.32137 * 3 2 1 30 30 H 1.08000 * 126.07062 * 0.03280 * 5 4 2 31 31 H 1.07999 * 126.45723 * 179.97438 * 6 5 4 32 32 H 0.97001 * 119.99813 * 359.97438 * 10 8 7 33 33 H 1.09010 * 113.61033 * 203.66623 * 13 11 10 34 34 H 1.08992 * 113.61585 * 334.56942 * 13 11 10 35 35 H 1.07990 * 119.98931 * 0.02562 * 17 16 14 36 36 H 1.07998 * 120.02062 * 179.74120 * 20 18 17 37 37 H 1.07993 * 119.99366 * 359.97438 * 23 16 14 38 38 H 1.09000 * 113.61713 * 220.01848 * 24 14 13 39 39 H 1.09000 * 113.61402 * 89.11937 * 24 14 13 40 40 H 0.97000 * 125.67210 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6325 -0.1391 2.2388 6 6 2.9069 -1.1306 3.1860 7 6 2.3534 -2.3031 2.7170 8 6 2.3937 -3.6086 3.3844 9 8 2.9567 -3.7265 4.4568 10 7 1.8075 -4.6775 2.8100 11 6 1.8482 -5.9816 3.4763 12 1 1.9899 -5.9019 4.5541 13 6 0.6944 -6.9152 3.0740 14 6 1.5977 -7.4107 1.9324 15 1 1.4990 -6.8312 1.0145 16 6 1.5138 -8.8970 1.6979 17 6 1.8544 -9.7758 2.7088 18 6 1.7730 -11.1417 2.4961 19 9 2.1011 -12.0005 3.4860 20 6 1.3611 -11.6268 1.2668 21 6 1.0254 -10.7457 0.2534 22 9 0.6226 -11.2178 -0.9467 23 6 1.1019 -9.3802 0.4703 24 6 2.7942 -6.9888 2.8014 25 7 1.7502 -2.0238 1.5116 26 1 -0.3933 0.4416 -0.7651 27 1 1.7923 -0.5138 -0.8900 28 1 1.5614 2.4680 1.2084 29 1 3.5346 1.7703 -0.0322 30 1 2.9266 0.8983 2.3008 31 1 3.4506 -1.0024 4.1103 32 1 1.3585 -4.5834 1.9553 33 1 0.4719 -7.6801 3.8181 34 1 -0.1946 -6.3872 2.7294 35 1 2.1799 -9.3971 3.6663 36 1 1.3014 -12.6919 1.0987 37 1 0.8400 -8.6926 -0.3202 38 1 3.6003 -6.5203 2.2368 39 1 3.1458 -7.7738 3.4710 40 1 1.2761 -2.6613 0.9550 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705374_6580494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:29:07 Heat of formation + Delta-G solvation = -54.584708 kcal Electronic energy + Delta-G solvation = -27302.784373 eV Core-core repulsion = 22914.750307 eV Total energy + Delta-G solvation = -4388.034066 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.112 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.10583 -50.08233 -42.66880 -41.51298 -40.12012 -38.64955 -37.61557 -34.84337 -32.49202 -32.02361 -31.48379 -31.26414 -27.38369 -26.77315 -26.20340 -24.08448 -23.63342 -22.86089 -21.76364 -21.32621 -20.44631 -19.74787 -18.92687 -18.44934 -18.15267 -17.46544 -17.24489 -17.07731 -16.88168 -16.74664 -16.47004 -16.40097 -15.87889 -15.72316 -15.46712 -15.39035 -15.21253 -14.93579 -14.68565 -14.38620 -14.06723 -13.87876 -13.74777 -13.54756 -13.53896 -13.12374 -12.96664 -12.83082 -12.69447 -12.16174 -12.03807 -11.77261 -11.44095 -11.37011 -10.44778 -10.32395 -10.24144 -9.94506 -9.84453 -9.40088 -4.92592 -0.13762 -0.11772 0.16938 1.20246 1.35822 1.75665 1.82066 2.02136 2.11158 2.14143 2.22179 2.74465 3.21747 3.32297 3.33741 3.50621 3.57989 3.68993 3.74414 3.83621 3.85327 3.88337 4.02367 4.03759 4.07265 4.15849 4.40681 4.53118 4.67313 4.69240 4.71988 4.74173 4.76594 4.79750 4.88867 4.92905 4.93806 4.98935 5.05430 5.24209 5.42602 5.49771 5.59831 5.68374 6.18723 6.37592 6.86352 6.95746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.060 4.060 3 Si 0.808 3.192 4 C 0.070 3.930 5 C -0.231 4.231 6 C -0.120 4.120 7 C -0.058 4.058 8 C 0.595 3.405 9 O -0.566 6.566 10 N -0.696 5.696 11 C 0.112 3.888 12 H 0.091 0.909 13 C -0.124 4.124 14 C -0.066 4.066 15 H 0.125 0.875 16 C -0.010 4.010 17 C -0.160 4.160 18 C 0.118 3.882 19 F -0.141 7.141 20 C -0.205 4.205 21 C 0.118 3.882 22 F -0.139 7.139 23 C -0.154 4.154 24 C -0.143 4.143 25 N -0.504 5.504 26 H 0.410 0.590 27 H 0.109 0.891 28 H -0.301 1.301 29 H -0.291 1.291 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.411 0.589 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.164 0.836 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.609 3.109 -8.389 9.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.170 4.170 3 Si 0.713 3.287 4 C -0.050 4.050 5 C -0.255 4.255 6 C -0.146 4.146 7 C -0.172 4.172 8 C 0.383 3.617 9 O -0.445 6.445 10 N -0.347 5.347 11 C 0.007 3.993 12 H 0.109 0.891 13 C -0.161 4.161 14 C -0.084 4.084 15 H 0.143 0.857 16 C -0.010 4.010 17 C -0.178 4.178 18 C 0.099 3.901 19 F -0.119 7.119 20 C -0.224 4.224 21 C 0.099 3.901 22 F -0.118 7.118 23 C -0.172 4.172 24 C -0.181 4.181 25 N -0.102 5.102 26 H 0.263 0.737 27 H 0.126 0.874 28 H -0.229 1.229 29 H -0.219 1.219 30 H 0.159 0.841 31 H 0.164 0.836 32 H 0.248 0.752 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.175 0.825 36 H 0.169 0.831 37 H 0.181 0.819 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -2.758 3.056 -6.758 7.913 hybrid contribution -0.080 -1.299 -0.064 1.303 sum -2.838 1.756 -6.822 7.595 Atomic orbital electron populations 1.86429 1.16592 1.82555 1.51964 1.24589 0.86330 1.11214 0.94824 0.94249 0.77032 0.73295 0.84143 1.20449 1.02190 0.84083 0.98265 1.20740 1.08662 0.99883 0.96237 1.21423 1.01775 0.91058 1.00365 1.20279 1.10336 0.95419 0.91146 1.17067 0.78008 0.82638 0.83974 1.90855 1.45802 1.85049 1.22808 1.45373 1.56693 1.07856 1.24782 1.21931 0.98225 0.81288 0.97840 0.89104 1.23416 0.96810 0.98209 0.97709 1.21709 0.97300 0.89726 0.99637 0.85677 1.19429 0.94399 0.95880 0.91278 1.21279 1.03812 0.90364 1.02362 1.17432 0.99801 0.87841 0.85062 1.91532 1.90091 1.70117 1.60174 1.21192 1.06331 1.02231 0.92695 1.17454 0.99247 0.92623 0.80815 1.91535 1.88031 1.89274 1.42960 1.21359 1.03176 0.93209 0.99501 1.23595 0.96793 0.98730 0.98988 1.41833 1.41945 1.09443 1.16988 0.73735 0.87364 1.22896 1.21868 0.84090 0.83642 0.75185 0.87546 0.88812 0.82535 0.83141 0.81881 0.90848 0.88014 0.72634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 3.54 12.86 -148.98 -1.92 1.63 16 2 C -0.06 0.36 3.07 71.24 0.22 0.58 16 3 Si 0.81 -4.42 30.56 68.60 2.10 -2.32 16 4 C 0.07 0.09 6.50 41.34 0.27 0.36 16 5 C -0.23 -1.35 9.32 22.01 0.21 -1.15 16 6 C -0.12 -0.95 10.65 22.57 0.24 -0.71 16 7 C -0.06 -0.27 7.06 40.35 0.28 0.01 16 8 C 0.59 3.32 7.79 86.45 0.67 3.99 16 9 O -0.57 -8.15 16.48 -4.33 -0.07 -8.22 16 10 N -0.70 2.27 5.26 -444.01 -2.33 -0.06 16 11 C 0.11 -0.42 4.33 45.52 0.20 -0.22 16 12 H 0.09 0.11 7.46 -2.39 -0.02 0.09 16 13 C -0.12 1.06 7.29 31.12 0.23 1.28 16 14 C -0.07 0.58 3.85 -11.02 -0.04 0.54 16 15 H 0.13 -1.59 8.09 -2.38 -0.02 -1.61 16 16 C -0.01 0.05 5.29 -19.88 -0.11 -0.06 16 17 C -0.16 0.43 8.60 22.32 0.19 0.63 16 18 C 0.12 0.16 7.30 22.37 0.16 0.32 16 19 F -0.14 -0.62 17.27 44.97 0.78 0.15 16 20 C -0.20 -0.25 10.01 22.36 0.22 -0.03 16 21 C 0.12 0.07 7.30 22.37 0.16 0.23 16 22 F -0.14 -0.46 17.27 44.97 0.78 0.32 16 23 C -0.15 0.60 9.69 22.32 0.22 0.82 16 24 C -0.14 0.79 7.25 31.12 0.23 1.02 16 25 N -0.50 0.66 5.99 -171.93 -1.03 -0.37 16 26 H 0.41 -6.88 8.74 -74.06 -0.65 -7.52 16 27 H 0.11 -1.27 7.96 -2.39 -0.02 -1.29 16 28 H -0.30 -1.03 7.11 99.48 0.71 -0.32 16 29 H -0.29 -0.30 7.11 99.48 0.71 0.41 16 30 H 0.14 0.71 6.19 -2.91 -0.02 0.70 16 31 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 32 H 0.41 -4.12 7.83 -92.71 -0.73 -4.84 16 33 H 0.11 -0.91 7.73 -2.38 -0.02 -0.92 16 34 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 35 H 0.16 -0.88 6.65 -2.92 -0.02 -0.90 16 36 H 0.15 -0.02 8.06 -2.91 -0.02 -0.04 16 37 H 0.16 -1.38 8.05 -2.91 -0.02 -1.41 16 38 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.10 -0.59 6.30 -2.39 -0.02 -0.60 16 40 H 0.43 -3.73 8.19 -92.71 -0.76 -4.49 16 Total: 0.00 -24.81 350.79 0.69 -24.12 By element: Atomic # 1 Polarization: -21.89 SS G_CDS: -0.95 Total: -22.85 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 3.35 Total: 7.60 kcal Atomic # 7 Polarization: 2.94 SS G_CDS: -3.36 Total: -0.43 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -1.99 Total: -6.59 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 1.55 Total: 0.47 kcal Atomic # 14 Polarization: -4.42 SS G_CDS: 2.10 Total: -2.32 kcal Total: -24.81 0.69 -24.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705374_6580494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.465 kcal (2) G-P(sol) polarization free energy of solvation -24.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds